| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007A22 | Sequence | 292 | 007865 (4) | ref|XP_011085741.1| | 1e-41 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic | 725 | 013889 (5) | ref|XP_009592903.1| | 9e-78 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
| JMSF007M02 | Sequence | 380 | 007865 (4) | ref|XP_009774058.1| | 6e-24 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl | 685 | 013889 (5) | ref|XP_009592903.1| | 2e-43 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
| JMSF020F21 | Sequence | 621 | 007865 (4) | ref|XP_009774058.1| | 2e-57 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana syl | 780 | 013889 (5) | ref|XP_009592903.1| | 4e-61 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
| JMSF021A22 | Sequence | 620 | 007865 (4) | ref|XP_011085741.1| | 3e-71 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Sesamum indic | 725 | 013889 (5) | ref|XP_009592903.1| | 9e-78 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom |
| JMSF043D22 | Sequence | 728 | 013889 (5) | ref|XP_009592903.1| | 1e-63 | PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Nicotiana tom | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF007A22+ ATGCCGGTGTTGGTAACAAGGAGGAGGTATTCCGGATATG
rJMSF021A22+ TGCCGGTGTTGGTAACAAGGAGGAGGTATTCCGGATATG
____________________________________________________________
consensus ATGCCGGTGTTGGTAACAAGGAGGAGGTATTCCGGATATG
. : . : . : . : . : . :
rJMSF007A22+ GAATGTCTACAAGTCGAATTTCCCCTTCATTCCAAACTCGAGCTACCATTCAATAATCGC
rJMSF021A22+ GAATGTCTACAAGTCGAATTTCCCCTTCATTCCAAACTCGAGCTACCATTCAATAATCGC
rJMSF043D22+ ATCGC
rJMSF020F21+ ATCGC
____________________________________________________________
consensus GAATGTCTACAAGTCGAATTTCCCCTTCATTCCAAACTCGAGCTACCATTCAATAATCGC
. : . : . : . : . : . :
rJMSF007A22+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
rJMSF021A22+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
rJMSF043D22+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
rJMSF020F21+ GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
____________________________________________________________
consensus GTCTTTGCTGAGATTGGACGATGTTGAAGATGCGGAGAACATATTCGACGAATGGTTGTC
. : . : . : . : . : . :
rJMSF007A22+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF021A22+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF043D22+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF020F21+ AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
rJMSF007M02+ TTCTGCTGGTTTGCTATGTGAGGAA
____________________________________________________________
consensus AGCAAAGTCGAGATATGATCCCCGAGTGGCGAATCTTCTGCTGGTTTGCTATGTGAGGAA
. : . : . : . : . : . :
rJMSF007A22+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF021A22+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF043D22+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF020F21+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
rJMSF007M02+ GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
____________________________________________________________
consensus GGGGCAATTCGAGAGGGCCGAAGGGTTCTTAGCCCAAATAATAGACGCCGGGGTAAAGCC
. : . : . : . : . : . :
rJMSF007A22+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF021A22+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF043D22+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF020F21+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
rJMSF007M02+ GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
____________________________________________________________
consensus GAACCCGAAGACATGGGAGATTCTCGCCGATGGGCATATCAAAGAGCGGAGAATCTCCGA
. : . : . : . : . : . :
rJMSF007A22+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF021A22+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF043D22+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF020F21+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
rJMSF007M02+ GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
____________________________________________________________
consensus GGCTTTATCCTGCTTGAAGGAGGCCGGTTCAGCCGAGGGATCTAAAAACTGGAGACCATG
. : . : . : . : . : . :
rJMSF007A22+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF021A22+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF043D22+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF020F21+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
rJMSF007M02+ GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
____________________________________________________________
consensus GCCCGCAACTATATCGTCTTTTTTCAAGCTTTGTGAGGTAGAAGACGATACGGAAAGCAA
. : . : . : . : . : . :
rJMSF007A22+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF021A22+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF043D22+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF020F21+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
rJMSF007M02+ GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
____________________________________________________________
consensus GGAGCTACTGATCGAGGTGTTGAAGCAAGCCGGGTGTCTTCATCCCGAGGACTATGTGTC
. : . : . : . : . : . :
rJMSF007A22+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF021A22+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF043D22+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF020F21+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
rJMSF007M02+ TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
____________________________________________________________
consensus TCAAATCCCGACACCCAATGGCTCGAATACTAACAACGAACCCGACACATGGGAGGAAGA
. : . : . : . : . : . :
rJMSF007A22+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF021A22+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF043D22+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF020F21+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
rJMSF007M02+ CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
____________________________________________________________
consensus CTCATTCCTGGATAACAACGACGATAAAAGTGGTGACCTCCTTCTCAGTGAACTACACGG
. : . : . : . : . : . :
rJMSF007A22+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
rJMSF021A22+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
rJMSF043D22+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
rJMSF020F21+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATATATCGCGGGCACTATTAAGAA
rJMSF007M02+ GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
____________________________________________________________
consensus GAGCTTATGATAACTTCTTTCGCTTATCCTAACGTGATAGATCGCGGGCACTATTAAGAA
. : . : . : . : . : . :
rJMSF007A22+ ATGTAGATTCTTT
rJMSF021A22+ ATGTAGATTCTTT
rJMSF043D22+ ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
rJMSF020F21+ ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
rJMSF007M02+ ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
____________________________________________________________
consensus ATGTAGATTCTTTTACAGTCAGAAAATTTTCATTTAAGTTTATATCAATGGTTTCTGCAT
. : . : . : . : . : . :
rJMSF043D22+ CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCT
rJMSF020F21+ CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCTTGGAAGCATAATGTACCAG
rJMSF007M02+ CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCTTGGAAGCATAATGTACCAG
____________________________________________________________
consensus CTTTTTAGTTCATGGATAAGCATTAGGGGCTTCATTACCCTTGGAAGCATAATGTACCAG
. : . : . : . : . : . :
rJMSF020F21+ GGGTCCCAAAATGGAAGCTAATGGTGATATTGATTGTAAATAAATATTG
rJMSF007M02+ GGGTCCCAAAATGGAAGCTAATGGTGATATTGATTGTAAATAAATATTGGTTCCCGTGAG
____________________________________________________________
consensus GGGTCCCAAAATGGAAGCTAATGGTGATATTGATTGTAAATAAATATTGGTTCCCGTGAG