Contig 013888:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN028P14Sequence622013888 (5)ref|XP_009628960.1|1e-83PREDICTED: scarecrow-like protein 22 [Nicotiana tomentosiformis]
JMSF007L04Sequence341001621 (4)767013888 (5)ref|XP_009343062.1|6e-74PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
JMSF024L21Sequence346006036 (4)649013888 (5)ref|XP_009628960.1|7e-67PREDICTED: scarecrow-like protein 22 [Nicotiana tomentosiformis]
JMSF036K16Sequence410006036 (4)111013888 (5)ref|XP_010941132.1|2e-09PREDICTED: scarecrow-like protein 27 [Elaeis guineensis]
JMSF047C02Sequence171006036 (4)638013888 (5)ref|XP_009343062.1|1e-59PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]

Alignment

This contig is upended


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JMFN028P14-                        GAGGTCGTAAACTTGGATACATTTGATCCCAGTTCTTATCAGTTGTC
                      ____________________________________________________________
consensus                          GAGGTCGTAAACTTGGATACATTTGATCCCAGTTCTTATCAGTTGTC
 
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JMFN028P14-           CTCTTTCCGACCATCCGGGAGCGAGGTAGTCGCTGTGAATTTCCCCATTTAGTCCCTTTC
rJMSF047C02+               TCCGACCATCCGGGAGCGAGGTAGTCGCTGTGAATTTCCCCATTTGGTCCCTTTC
rJMSF024L21+                                                                    TC
rJMSF007L04+                       TCCGGGAGCGAGGTAGTCGCTGTGAATTTCCCCATTTGGTCCNTTTC
                      ____________________________________________________________
consensus             CTCTTTCCGACCATCCGGGAGCGAGGTAGTCGCTGTGAATTTCCCCATTTGGTCCCTTTC
 
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JMFN028P14-           AAACCATCTCTCCGCTCTTCCTTCACTGCTTCATTACATAAAGCAGCTCTCGCCAAAAAT
rJMSF047C02+          AAACCATCTCTCCGNTCTTCCTTCACTGCTTCATTACATAAAGCAGCTCTCGCCAAAAAT
rJMSF024L21+          AAACCATCTCTCCGCTCTTCCTTCACTGCTTCATTACATAAAGCAGCTCTCGCCAAAAAT
rJMSF007L04+          AAACCATCTCTCCGCTCTTCCTTCACTGCTTCATTACATAAAGCAGCTCTCGCCAAAAAT
                      ____________________________________________________________
consensus             AAACCATCTCTCCGCTCTTCCTTCACTGCTTCATTACATAAAGCAGCTCTCGCCAAAAAT
 
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JMFN028P14-           CGTAGTTTCACTGGAACGAGGATGCGAACGAACTGAACTTCCTTTCGCTCACCACATTCT
rJMSF047C02+          CGTAGTTTCACTGGAACGAGGATGCGAACGAACTGAACTTCCTTTCGCTCACCACATTCT
rJMSF024L21+          CGTAGTTTCACTGGAACGAGGATGCGAACGAACTGAACTTCCTTTCGCTCACCACATTCT
rJMSF007L04+          CGTAGTTTCACTGGAACGAGGATGCGAACGAACTGAACTTCCTTTCGCTCACCACATTCT
                      ____________________________________________________________
consensus             CGTAGTTTCACTGGAACGAGGATGCGAACGAACTGAACTTCCTTTCGCTCACCACATTCT
 
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JMFN028P14-           CAATGCCCTAAAATACTACGAGGTCCTCTTCGAGAGTATGGGTGCTGCAAAGGTGACTCC
rJMSF047C02+          CAATGCCCTAAAATANTACGAGGTCCTCTTCGAGAGTATGGGTGCTGCAAAGGTGACTCC
rJMSF024L21+          CAATGCCCTAAAATACTACGAGGTCCTCTTCGAGAGTATGGGTGCTGCAAAGGTGACTCC
rJMSF007L04+          CAATGCCCTAAAATACTACGAGGTCCTCTTCGAGAGTATGGGTGCTGCAAAGGTGACTCC
                      ____________________________________________________________
consensus             CAATGCCCTAAAATACTACGAGGTCCTCTTCGAGAGTATGGGTGCTGCAAAGGTGACTCC
 
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JMFN028P14-           CGACATGGCAAACAAGATGGAGAGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGCA
rJMSF047C02+          CGACATGGCAAACAAGATGGAGAGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGCA
rJMSF024L21+          CGACATGGCAAACAAGATGGAGAGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGCA
rJMSF007L04+          CGACATGGCAAACAAGATGGAGAGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGCA
                      ____________________________________________________________
consensus             CGACATGGCAAACAAGATGGAGAGGTTCCTCTTCCAGCCTAGCATCGAGAGCATCGTGCA
 
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rJMSF036K16+                                                              TCAGCTGG
JMFN028P14-           AGGGCGCCTCTGTTTCCCCGATCAAATGCCCCCATGGAGAACCCTGTTTACTTCAGCTGG
rJMSF047C02+          AGGGCGCCTCTGTTTCCCCGATCAAATGCCCCCATGGAGAACCCTGTTTACTTCAGCTGG
rJMSF024L21+          AGGGCGCCTCTGTTTCCCCGATCAAATGCCCCCATGGAGAACCCTGTTTACTTCAGCTGG
rJMSF007L04+          AGGGCGCCTCTGTTTCCCCGATCAAATGCCCCCATGGAGAACCCTGTTTACTTCAGCTGG
                      ____________________________________________________________
consensus             AGGGCGCCTCTGTTTCCCCGATCAAATGCCCCCATGGAGAACCCTGTTTACTTCAGCTGG
 
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rJMSF036K16+          CTTTCTACCCGNGGCNTTCAGTAATTTCACCGANACTCNAGCCGAGTGCNTCANGAAGCG
JMFN028P14-           CTTTCTACCCGTGGCATTCAGTAATTTCACCGAAACTCAAGCCGAGTGCATCATGAAGCG
rJMSF047C02+          CTTTCTACCNGTGGCATTCNGTAATTTCACNGAAACTCAAGCCGANTGCATCATGAAGCG
rJMSF024L21+          CTTTCTACCCGTGGCATTCAGTAATTTCACCGAAACTCAAGCCGAGTGCATCATGAAGCG
rJMSF007L04+          CTTTCTACCCGTGGCATTCAGTAATTTCACCGAAACTCAAGCCGAGTGCATCATGAAGCG
                      ____________________________________________________________
consensus             CTTTCTACCCGTGGCATTCAGTAATTTCACCGAAACTCAAGCCGAGTGCATCATGAAGCG
 
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rJMSF036K16+          AAATCAAGTTCGAGGGTTTCACGTGGAGAAGAGGCAGGCATCG                 
JMFN028P14-           AAATCAAGTTCGAGGGTTTCACGTGGAGAAGAGGCAGGCATCGCTCGTGCTGTGCTGGCA
rJMSF047C02+          AAATCAAGTTCGAGGGTTTCACGTGGAGAAGAGGCAGGCNTCGCTCGNGCTNTGNNGGCA
rJMSF024L21+          AAATCAAGTTCGAGGGTTTCACGTGGAGAAGAGGCAGGCATCGCTCGTGCTGTGCTGGCA
rJMSF007L04+          AAATCAAGTTCGAGGGTTTCACGTGGAGAAGAGGCAGGCATCGCTCGTGCTGTGCTGGCA
                      ____________________________________________________________
consensus             AAATCAAGTTCGAGGGTTTCACGTGGAGAAGAGGCAGGCATCGCTCGTGCTGTGCTGGCA
 
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JMFN028P14-           ACGCCGAGAGTTGTTGACCGCCATGGCTTGGAGGTGTTGATCGATGTAGCTTCGTTTCGT
rJMSF047C02+          ACGCCGAGAGTTGTNGACCNCCATGGCTNGGAGGTGTNGATCGATGTAGCTTCGTTTNGT
rJMSF024L21+          ACGCCGAGAGTTGTTGACCGCCATGGCTTGGAGGTGTTNATCGATGTAGNTTCGTTTCGT
rJMSF007L04+          ACGCCGAGAGTTGTTGACCGCCATGGCTTGGAGGTGTTGATCGATGTAGCTTCGTTTCGT
                      ____________________________________________________________
consensus             ACGCCGAGAGTTGTTGACCGCCATGGCTTGGAGGTGTTGATCGATGTAGCTTCGTTTCGT
 
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JMFN028P14-           CAAAGCTGGAAACAGCGGTTTAACTAAATATGTTG                         
rJMSF047C02+          CAAAGCNGGAAACAGCGGTTTAACTAAATATGTTGTTTCATAGCAATTAATAAAATCTNA
rJMSF024L21+          CAAAGCTGGAAACAGCGGTTTAACTAAATATGTTGTTTCATAGCAATTAATAAAATCTTA
rJMSF007L04+          CAAAGCTGGAAACAGCGGTTTAACTAAATATGTTGTTTCATAGCAATTAATAAAATCTTA
                      ____________________________________________________________
consensus             CAAAGCTGGAAACAGCGGTTTAACTAAATATGTTGTTTCATAGCAATTAATAAAATCTTA
 
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rJMSF047C02+          AAACTCGTTGCATCTCTGAGTGCTGCTGNGATGTTTCTAGTTT                 
rJMSF024L21+          AAACTCGTTGCATCTCTGAGTGCTGCTGTGATGTNTCTAGTTTGNTACTATCTAAGTAGT
rJMSF007L04+          AAACTCGTTGCATCTCTGAGTGCTGCTGTGATGTTTCTAGTTTGCTACTATCTAAGTAGT
                      ____________________________________________________________
consensus             AAACTCGTTGCATCTCTGAGTGCTGCTGTGATGTTTCTAGTTTGCTACTATCTAAGTAGT
 
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rJMSF024L21+          ATTTTGACCGTAGACAGATANTCTTGTCGAAAACNGAATGTTTTCCT             
rJMSF007L04+          ATTTTGACCGTAGACAGATATTCTTGTCGAAAACTGAATGTTTTCCTTGTGGCATGAGCT
                      ____________________________________________________________
consensus             ATTTTGACCGTAGACAGATATTCTTGTCGAAAACTGAATGTTTTCCTTGTGGCATGAGCT
 
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rJMSF007L04+          ATTTGGACATCTTTGTTATGTACTATTATTGCCTAGTATTAGTTGTAACCAAGTTGCTGC
                      ____________________________________________________________
consensus             ATTTGGACATCTTTGTTATGTACTATTATTGCCTAGTATTAGTTGTAACCAAGTTGCTGC