Contig 013882:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF007B17-                 GGGTGAATTCTTTGCTGATTTACATACAGTTCCGAGGTAACTAGAATCGTAGAA
rJMSF047J20+                                  TTTACATACAGTTCCGAGGTAACTAGAATCGTAGAA
rJMSF007B17+                                  TTTACATACAGTTCCGAGGTAACTAGAATCGTAGAA
                      ____________________________________________________________
consensus                   GGGTGAATTCTTTGCTGATTTACATACAGTTCCGAGGTAACTAGAATCGTAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF007B17-           AGATGAGGAAGCTGAAGTTTCATGAGAAGAAGCTGGTGAAGAAGGCGAACTTTCTAGAAT
rJMSF047J20+          AGATGAGGAAGCTGAAGTTTCATGAGAAGAAGCTGGTGAAGAAGGCGAACTTTCTAGAAT
rJMSF007B17+          AGATGAGGAAGCTGAAGTTTCATGAGAAGAAGCTGGTGAAGAAGGCGAACTTTCTAGAAT
                      ____________________________________________________________
consensus             AGATGAGGAAGCTGAAGTTTCATGAGAAGAAGCTGGTGAAGAAGGCGAACTTTCTAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF007B17-           GGAAGAGAGAGCATGGCCACCGAGAAGCTCTTGTTATGCATCGCTACCACGTCACAGGAA
rJMSF047J20+          GGAAGAGAGAGCATGGCCACCGAGAAGCTCTTGTTATGCATCGCTACCACGTCACAGGAA
rJMSF007B17+          GGAAGAGAGAGCATGGCCACCGAGAAGCTCTTGTTATGCATCGCTACCACGTCACAGGAA
                      ____________________________________________________________
consensus             GGAAGAGAGAGCATGGCCACCGAGAAGCTCTTGTTATGCATCGCTACCACGTCACAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF007B17-           GAGACGACTACCAGAAGTACTCAGGATTGTGTAGAATGACACAGAAGCTGGTGAATATAC
JMSF047J20-                                  GGATTGTGTAGAATGACACAGAAGCTGGTGAATATAC
rJMSF047J20+          GAGACGACTACAAGAAGTACTCAGGATTGTGTAGAATGACACAGAAGCTGGTGAATATAC
rJMSF007B17+          GAGACGACTACAAGAAGTACTCAGGATTGTGTAGAATGACACAGAAGCTGGTGAATATAC
                      ____________________________________________________________
consensus             GAGACGACTACAAGAAGTACTCAGGATTGTGTAGAATGACACAGAAGCTGGTGAATATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF007B17-           TGAAGCNAATGGACGCA                                           
JMSF047J20-           TGAAGCAAATGGACGCAAGAGATCCGTTTCGTATTGAAATGACCGATGCCCTTCTCGAAA
rJMSF047J20+          TGAAGCAAATGGACGCAAGAGATCCGTTTCGTATTGAAATGACCGATGCCCTTCTCGAAA
rJMSF007B17+          TGAAGCAAATGGACGCAAGAGATCCGTTTCGTATTGAAATGACCGATGCCCTTCTCGAAA
                      ____________________________________________________________
consensus             TGAAGCAAATGGACGCAAGAGATCCGTTTCGTATTGAAATGACCGATGCCCTTCTCGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J20-           AGCTGTATAACATGGGTGTGATATCAGAACGGAAAAGTTTAGCATTGTGTGATAAGCTAT
rJMSF047J20+          AGCTGTATAACATGGGTGTGATATCAGAACGGAAAAGTTTAGCATTGTGTGATAAGCTAT
rJMSF007B17+          AGCTGTATAACATGGGTGTGATATCAGAACGGAAAAGTTTAGCATTGTGTGATAAGCTAT
                      ____________________________________________________________
consensus             AGCTGTATAACATGGGTGTGATATCAGAACGGAAAAGTTTAGCATTGTGTGATAAGCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J20-           CAGTTTCATCCTTCTGTAGGCGTAGACTCTCCACTGTCTTGGTCAAGCTAAAGTTTGCTG
rJMSF047J20+          CAGTTTCATCCTTCTGTAGGCGTAGACTCTCCACTGTCTTGGTCAAGCTAAAGTTTGCTG
rJMSF007B17+          CAGTTTCATCCTTCTGTAGGCGTAGACTCTCCACTGTCTTGGTCAAGCTAAAGTTTGCTG
                      ____________________________________________________________
consensus             CAGTTTCATCCTTCTGTAGGCGTAGACTCTCCACTGTCTTGGTCAAGCTAAAGTTTGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J20-           AACACTTGAAGGAAGCTGTGACATATATAGAACAGGGGCATATTCGAGTTGGACCAGATA
rJMSF047J20+          AACACTTGAAGGAAGCTGTGACATATATAGAACAGGGGCATATTCGAGTTGGACCAGATA
rJMSF007B17+          AACACTTGAAGGAAGCTGTGACATATATAGAACAGGGGCATATTCGAGTTGGACCAGATA
                      ____________________________________________________________
consensus             AACACTTGAAGGAAGCTGTGACATATATAGAACAGGGGCATATTCGAGTTGGACCAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J20-           CCATTACTGATCCAGCATTTCTGGTTACAAGAAATATGGAAGACTTTATTACATGGGTGG
rJMSF047J20+          CCATTACTGATCCAGCATTTCTGGTTACAAGAAATATGGAAGACTTTATTACATGGGTGG
rJMSF007B17+          CCATTACTGATCCAGCATTTCTGGTTACAAGAAATATGGAAGACTTTATTACATGGGTGG
                      ____________________________________________________________
consensus             CCATTACTGATCCAGCATTTCTGGTTACAAGAAATATGGAAGACTTTATTACATGGGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J20-           ATACTTCAAAGATAAGAAGAAAGGTCTTAGAGTACAATGAGAAGTTGGATGACTATGATG
rJMSF047J20+          ATACTTCAAAGATAAGAAGAAAGGTCTTAGAGTACAATGAGAAGTTGGATGACTATGATG
rJMSF007B17+          ATACTTCAAAGATAAGAAGAAAGGTCTTAGAGTACAATGAGAAGTTGGATGACTATGATG
                      ____________________________________________________________
consensus             ATACTTCAAAGATAAGAAGAAAGGTCTTAGAGTACAATGAGAAGTTGGATGACTATGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J20-           CTTTGAACTCGTGAATCCATGAGGACACTCCAAAAAACCACACTGAAATTTTAGTGGTTT
rJMSF047J20+          CTTTGAACTCGTGAATCCATGAGGACACTCCAAAAAACCACACTGAAATTTTAGTGGTTT
rJMSF007B17+          CTTTGAACTCGTGAATCCATGAGGACACTCCAAAAAACCACACTGAAATTTTAGTGGTTT
                      ____________________________________________________________
consensus             CTTTGAACTCGTGAATCCATGAGGACACTCCAAAAAACCACACTGAAATTTTAGTGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047J20-           TTCTTATTCCTTTTCATCATGTAATCTTACTC                            
rJMSF047J20+          TTCTTATTCCTTTTCATCATGTAATCTTACTCAGAAGTGCTTTCTTCTTGGCGGCTCTCA
rJMSF007B17+          TTCTTATTCCTTTTCATCATGTAATCTTACTCAGAAGTGCTTTCTTCTTGGCGGCTCTCA
                      ____________________________________________________________
consensus             TTCTTATTCCTTTTCATCATGTAATCTTACTCAGAAGTGCTTTCTTCTTGGCGGCTCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF047J20+          TTGAGGGCTTAGTTAACAAGCCAATGTCCTTATATTTATTACATAAAAAC          
rJMSF007B17+          TTGAGGGCTTAGTTAACAAGCCAATGTCCTTATATTTATTACATAAAAACATGTTTGAAT
                      ____________________________________________________________
consensus             TTGAGGGCTTAGTTAACAAGCCAATGTCCTTATATTTATTACATAAAAACATGTTTGAAT