Contig 013880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003D18Sequence308007740 (3)470013880 (2)ref|XP_002266433.1|8e-23PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Vitis vinifera]
JMSF004H03Sequence356007740 (3)ref|XP_009613894.1|1e-04PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]306013880 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF003D18+ AGAATCATAT
                      ____________________________________________________________
consensus AGAATCATAT
 
. : . : . : . : . : . :
rJMSF003D18+ AAAGAAAGAAGGATTATTATTTGATGGAAATGATGTAACAAAGTGCTACATATGTNTGNC
                      ____________________________________________________________
consensus AAAGAAAGAAGGATTATTATTTGATGGAAATGATGTAACAAAGTGCTACATATGTNTGNC
 
. : . : . : . : . : . :
rJMSF003D18+ TGAGTATGAGGAAGGAGACCAGATACGAGTGCTCCCATGCCACCATGAGTTTCNCANGTC
                      ____________________________________________________________
consensus TGAGTATGAGGAAGGAGACCAGATACGAGTGCTCCCATGCCACCATGAGTTTCNCANGTC
 
. : . : . : . : . : . :
rJMSF003D18+ ANGNNNTGATAAANGGCTGAAAGAGATACACGGNGNGTGCCCACTTTGTCGTGGGGATGT
                      ____________________________________________________________
consensus ANGNNNTGATAAANGGCTGAAAGAGATACACGGNGNGTGCCCACTTTGTCGTGGGGATGT
 
. : . : . : . : . : . :
rJMSF003D18+ TCAAGAAGGTTTAACANCTACAANCGCAGATATCCCTTCCCCATCTTTGTCATAGAAGGC
                      ____________________________________________________________
consensus TCAAGAAGGTTTAACANCTACAANCGCAGATATCCCTTCCCCATCTTTGTCATAGAAGGC
 
. : . : . : . : . : . :
rJMSF003D18+ AGGCATCCGGCTTTNTCATNNTNGTCATNTCCNTGTCACTTGGTGGTGGTACAGNAGCGA
rJMSF004H03+ GTCATNTCCTTGTCACTTGGTGGTGGTACAGGAGCGA
                      ____________________________________________________________
consensus AGGCATCCGGCTTTNTCATNNTNGTCATNTCCTTGTCACTTGGTGGTGGTACAGGAGCGA
 
. : . : . : . : . : . :
rJMSF003D18+ AGGAAAACACATCTTNGANTNTTTTCTGTACACCATTCTGGTCTTCTTATNNTTTACGCT
rJMSF004H03+ AGGAAAACACATCTNTGATTCTATTCTGTACACCANTNTGGTCTTNTTATTTTTTACGCT
                      ____________________________________________________________
consensus AGGAAAACACATCTTTGATTCTTTTCTGTACACCATTCTGGTCTTCTTATTTTTTACGCT
 
. : . : . : . : . : . :
rJMSF003D18+ TCCCTTCCCCGAAGAACAACTTAGCTGCGACTCAAGAAAAACGAAGCCACAGGAATCAAC
rJMSF004H03+ TCCCTTCCCCGAAGANCAANTTAGCTGCGACTCAAGAAAAA-GAAGCCACAGGAATCAAC
                      ____________________________________________________________
consensus TCCCTTCCCCGAAGAACAACTTAGCTGCGACTCAAGAAAAACGAAGCCACAGGAATCAAC
 
. : . : . : . : . : . :
rJMSF003D18+ CTCTT
rJMSF004H03+ CTCTTAATGTTGTTTTNTTNNGAGATTGTTNTTTTGTTTGTTNNNAATGTNGCTTTGGCA
                      ____________________________________________________________
consensus CTCTTAATGTTGTTTTNTTNNGAGATTGTTNTTTTGTTTGTTNNNAATGTNGCTTTGGCA
 
. : . : . : . : . : . :
rJMSF004H03+ CACAAAGATGGTGGGTGGATTGGATGATTGTGCAAAGTTTATGCCTTTGACAACACAACC
                      ____________________________________________________________
consensus CACAAAGATGGTGGGTGGATTGGATGATTGTGCAAAGTTTATGCCTTTGACAACACAACC