Contig 013880:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003D18Sequence308007740 (3)470013880 (2)ref|XP_002266433.1|8e-23PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Vitis vinifera]
JMSF004H03Sequence356007740 (3)ref|XP_009613894.1|1e-04PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Nicotiana tomentosiformis]306013880 (2)

Alignment

This contig is upended


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rJMSF003D18+                                                            AGAATCATAT
                      ____________________________________________________________
consensus                                                               AGAATCATAT
 
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rJMSF003D18+          AAAGAAAGAAGGATTATTATTTGATGGAAATGATGTAACAAAGTGCTACATATGTNTGNC
                      ____________________________________________________________
consensus             AAAGAAAGAAGGATTATTATTTGATGGAAATGATGTAACAAAGTGCTACATATGTNTGNC
 
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rJMSF003D18+          TGAGTATGAGGAAGGAGACCAGATACGAGTGCTCCCATGCCACCATGAGTTTCNCANGTC
                      ____________________________________________________________
consensus             TGAGTATGAGGAAGGAGACCAGATACGAGTGCTCCCATGCCACCATGAGTTTCNCANGTC
 
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rJMSF003D18+          ANGNNNTGATAAANGGCTGAAAGAGATACACGGNGNGTGCCCACTTTGTCGTGGGGATGT
                      ____________________________________________________________
consensus             ANGNNNTGATAAANGGCTGAAAGAGATACACGGNGNGTGCCCACTTTGTCGTGGGGATGT
 
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rJMSF003D18+          TCAAGAAGGTTTAACANCTACAANCGCAGATATCCCTTCCCCATCTTTGTCATAGAAGGC
                      ____________________________________________________________
consensus             TCAAGAAGGTTTAACANCTACAANCGCAGATATCCCTTCCCCATCTTTGTCATAGAAGGC
 
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rJMSF003D18+          AGGCATCCGGCTTTNTCATNNTNGTCATNTCCNTGTCACTTGGTGGTGGTACAGNAGCGA
rJMSF004H03+                                 GTCATNTCCTTGTCACTTGGTGGTGGTACAGGAGCGA
                      ____________________________________________________________
consensus             AGGCATCCGGCTTTNTCATNNTNGTCATNTCCTTGTCACTTGGTGGTGGTACAGGAGCGA
 
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rJMSF003D18+          AGGAAAACACATCTTNGANTNTTTTCTGTACACCATTCTGGTCTTCTTATNNTTTACGCT
rJMSF004H03+          AGGAAAACACATCTNTGATTCTATTCTGTACACCANTNTGGTCTTNTTATTTTTTACGCT
                      ____________________________________________________________
consensus             AGGAAAACACATCTTTGATTCTTTTCTGTACACCATTCTGGTCTTCTTATTTTTTACGCT
 
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rJMSF003D18+          TCCCTTCCCCGAAGAACAACTTAGCTGCGACTCAAGAAAAACGAAGCCACAGGAATCAAC
rJMSF004H03+          TCCCTTCCCCGAAGANCAANTTAGCTGCGACTCAAGAAAAA-GAAGCCACAGGAATCAAC
                      ____________________________________________________________
consensus             TCCCTTCCCCGAAGAACAACTTAGCTGCGACTCAAGAAAAACGAAGCCACAGGAATCAAC
 
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rJMSF003D18+          CTCTT                                                       
rJMSF004H03+          CTCTTAATGTTGTTTTNTTNNGAGATTGTTNTTTTGTTTGTTNNNAATGTNGCTTTGGCA
                      ____________________________________________________________
consensus             CTCTTAATGTTGTTTTNTTNNGAGATTGTTNTTTTGTTTGTTNNNAATGTNGCTTTGGCA
 
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rJMSF004H03+          CACAAAGATGGTGGGTGGATTGGATGATTGTGCAAAGTTTATGCCTTTGACAACACAACC
                      ____________________________________________________________
consensus             CACAAAGATGGTGGGTGGATTGGATGATTGTGCAAAGTTTATGCCTTTGACAACACAACC