Contig 013878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032F02Sequence571010254 (2)ref|XP_009630349.1|3e-63PREDICTED: protein YIPF5 homolog [Nicotiana tomentosiformis] ref|XP_009791147.1|106013878 (2)
JMSF003E24Sequence368010254 (2)ref|XP_009630349.1|5e-20PREDICTED: protein YIPF5 homolog [Nicotiana tomentosiformis] ref|XP_009791147.1|749013878 (2)ref|XP_009630349.1|2e-63PREDICTED: protein YIPF5 homolog [Nicotiana tomentosiformis] ref|XP_009791147.1|

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+                                         TTCCAANTGCTCGCTGGGAAGATCCATTT
                      ____________________________________________________________
consensus                                            TTCCAANTGCTCGCTGGGAAGATCCATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          GGAATCATACTGGGATGGGTGATCATGGCTTCNGTCTTTCNGTATGTGGTGTTCAACATG
                      ____________________________________________________________
consensus             GGAATCATACTGGGATGGGTGATCATGGCTTCNGTCTTTCNGTATGTGGTGTTCAACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          CTCGCTGGCCGAAATGGGAACTTGGATTTGTATAGATGTGTTAGCTTGATCGGCTATTGT
                      ____________________________________________________________
consensus             CTCGCTGGCCGAAATGGGAACTTGGATTTGTATAGATGTGTTAGCTTGATCGGCTATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          ATGCTACCAGTTGTGATCTTGTCGGCAATATCATTGTTCTTGCCTGGTGGGATGGCAATT
                      ____________________________________________________________
consensus             ATGCTACCAGTTGTGATCTTGTCGGCAATATCATTGTTCTTGCCTGGTGGGATGGCAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          AAGGTGGTAGCCGGGGTTTTTGTTATATGGTCTACACGAGTTTGCACGAGGCTTGTGGTC
                      ____________________________________________________________
consensus             AAGGTGGTAGCCGGGGTTTTTGTTATATGGTCTACACGAGTTTGCACGAGGCTTGTGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          GAGTTGGCATCATGTGGGGATGAGCACCGCGGGTTGATTGCATATGCTTGTTTCTTGATT
                      ____________________________________________________________
consensus             GAGTTGGCATCATGTGGGGATGAGCACCGCGGGTTGATTGCATATGCTTGTTTCTTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          TACACGCTCTTCTCTTTGCTTGTGATATTCTGATCCCAGCTGAAACTAGGATGTGTATTT
                      ____________________________________________________________
consensus             TACACGCTCTTCTCTTTGCTTGTGATATTCTGATCCCAGCTGAAACTAGGATGTGTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032F02+               TCATGAATTGGATACTTTATGTTCAANGNGATACTTANGCAAGGCNNNAAATGAT
rJMSF003E24+          GGATCTCATGAATTGGATACTTTATGTACAATGTGATACTTCTGCAAGGCTTTAAATGAT
                      ____________________________________________________________
consensus             GGATCTCATGAATTGGATACTTTATGTTCAATGTGATACTTCTGCAAGGCTTTAAATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032F02+          GCAAAATCGATTTTGTTGATAGGTGTTGTCGGCAGAGATAGANTTATAG           
rJMSF003E24+          GCAAAATCGATTTTGTTGATAGGTGTTGTCGGCAGAGATAGACTTATAGTGTTGAATTTT
                      ____________________________________________________________
consensus             GCAAAATCGATTTTGTTGATAGGTGTTGTCGGCAGAGATAGACTTATAGTGTTGAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          AGGCAATTTGGGTTTCATCATCTACTGCTGAGGATCTAATTTTAAGTTCAAAAGATTTGC
                      ____________________________________________________________
consensus             AGGCAATTTGGGTTTCATCATCTACTGCTGAGGATCTAATTTTAAGTTCAAAAGATTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          CAGAAAGTCTCATTCTTGTCTGCTACATATGTGTTCTTTATTAATGTGGCATATTTTCAT
                      ____________________________________________________________
consensus             CAGAAAGTCTCATTCTTGTCTGCTACATATGTGTTCTTTATTAATGTGGCATATTTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          GTCTTGTAATGTTTTGTCACAGTGTTATATATGGGTCAATTTCATCTTGTTTCCAGGGCT
                      ____________________________________________________________
consensus             GTCTTGTAATGTTTTGTCACAGTGTTATATATGGGTCAATTTCATCTTGTTTCCAGGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003E24+          TTTCTTAATTATGAGGTGCCATATGTTTACCAATGACTCAGGACTTCAGATCCATCTTCT
                      ____________________________________________________________
consensus             TTTCTTAATTATGAGGTGCCATATGTTTACCAATGACTCAGGACTTCAGATCCATCTTCT