Contig 013877:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+                               TCAGACGTGCTAACCAAGGTACAACACAGCCTAAACCTG
                      ____________________________________________________________
consensus                                  TCAGACGTGCTAACCAAGGTACAACACAGCCTAAACCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          AGCAAGATAGTATCTTGTTACATGCACAGCAACAGATAGCTATGCAGAGGTTAATGCTAC
                      ____________________________________________________________
consensus             AGCAAGATAGTATCTTGTTACATGCACAGCAACAGATAGCTATGCAGAGGTTAATGCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          AACAACCTGGGCCACCATCTACGAAGATTGTGTGCCTAACGCAGATGGTAGATGAAGAAG
rJMSF003D01+                                GAAGATTGTGTGCCTAACGCAGATGGTAGATGAAGAAG
                      ____________________________________________________________
consensus             AACAACCTGGGCCACCATCTACGAAGATTGTGTGCCTAACGCAGATGGTAGATGAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          AGCTCAAAGATGATGAGAACTATGCAGATTTATTGGAAGACATTAAAATGGAATGTGGGA
rJMSF003D01+          AGCTCAAAGATGATGAGAACTATGCAGATTTATTGGAAGACATTAAAATGGAATGTGGGA
                      ____________________________________________________________
consensus             AGCTCAAAGATGATGAGAACTATGCAGATTTATTGGAAGACATTAAAATGGAATGTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          AGTTTGGTGATTTGGTGAATGTTGTTATTCCCCGCCCAAACCCAAATGGCAGCCCTTCAC
rJMSF003D01+          AGTTTGGTGATTTGGTGAATGTTGTTATTCCCCGCCCAAACCCAAATGGCAGCCCTTCAC
                      ____________________________________________________________
consensus             AGTTTGGTGATTTGGTGAATGTTGTTATTCCCCGCCCAAACCCAAATGGCAGCCCTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          CAGGAGTTGGAAAGGTGTTTTTGGAGTATGCAGATGTTGAAAGTGGTAAAAAAGCTTTGT
rJMSF003D01+          CAGGAGTTGGAAAGGTGTTTTTGGAGTATGCAGATGTTGAAAGTGGTAAAAAAGCTTTGT
                      ____________________________________________________________
consensus             CAGGAGTTGGAAAGGTGTTTTTGGAGTATGCAGATGTTGAAAGTGGTAAAAAAGCTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          CAGGACTGAACGGCAGAAAATTCGGTGGCAATGTTGTTGTTGCCATCTTCTATCCAGAGA
rJMSF004N22+                                                               CCAGAGA
rJMSF003D01+          CAGGACTGAACGGCAGAAAATTCGGTGGCAATGTTGTTGTTGCCATCTTCTATCCAGAGA
                      ____________________________________________________________
consensus             CAGGACTGAACGGCAGAAAATTCGGTGGCAATGTTGTTGTTGCCATCTTCTATCCAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          ACAAGTTCTCTCAGGGAGAGTACGATGGCTAG-TTTTACATTAGCTCCCTAGCTAGGTAG
rJMSF004N22+          ACAAGTTCTCTCAGGGAGAGTACGATGGCTAGTTTTTACATTAGCTCCCTAGCTAGGTAG
rJMSF003D01+          ACAAGTTCTCTCAGGGAGAGTACGATGGCTAG-TTTTACATTAGCTCCCTAGCTAGGTAG
                      ____________________________________________________________
consensus             ACAAGTTCTCTCAGGGAGAGTACGATGGCTAG-TTTTACATTAGCTCCCTAGCTAGGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          TCAGATACTCTTATGTGGTAGAGAAACTCGATCTAATGTCTCTCTCGCGATCAAGTGGGT
rJMSF004N22+          TCAGATACTCTTATGTGGTAGAGAAACTCGATCTAATGTCTCTCTCGCGATCAAGTGGGT
rJMSF003D01+          TCAGATACTCTTATGTGGTAGAGAAACTCGATCTAATGTCTCTCTCGCGATCAAGTGGGT
                      ____________________________________________________________
consensus             TCAGATACTCTTATGTGGTAGAGAAACTCGATCTAATGTCTCTCTCGCGATCAAGTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          TTGTAATCTTTGACAACTGAACTGAACGCCAAGGAGTTGAACTTGAGACTGTATGCCTAA
rJMSF004N22+          TTGTAATCTTTGACAACTGAACTGAACGCCAAGGAGTTGAACTTGAGACTGTATGCCTAA
rJMSF003D01+          TTGTAATCTTTGACAACTGAACTGAACGCCAAGGAGTTGAACTTGAGACTGTATGCCTAA
                      ____________________________________________________________
consensus             TTGTAATCTTTGACAACTGAACTGAACGCCAAGGAGTTGAACTTGAGACTGTATGCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          CCACATGTCTTGGCCTTGCCCTTCAATTGCTGGACTATGCCATATTGCCATGCCAGGCTT
rJMSF004N22+          CCACATGTCTTGGCCTTGCCCTTCAATTGCTGGACTATGCCATATTGCCATGCCAGGCTT
rJMSF003D01+          CCACATGTCTTGGCCTTGCCCTTCAATTGCTGGACTATGCCATATTGCCATGCCAGGCTT
                      ____________________________________________________________
consensus             CCACATGTCTTGGCCTTGCCCTTCAATTGCTGGACTATGCCATATTGCCATGCCAGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          TAAATTTTTTACTTTACAATCTTCTTCCTGGTTCTCATATCCAGTTATTTAAGTAGATTG
rJMSF004N22+          TAAATTTTTTACTTTACAATCTTCTTCCTGGTTCTCATATCCAGTTATTTAAGTAGATTG
rJMSF003D01+          TAAATTTTTTACTTTACAATCTTCTTCCTGGTTCTCATATCCAGTTATTTAAGTAGATTG
                      ____________________________________________________________
consensus             TAAATTTTTTACTTTACAATCTTCTTCCTGGTTCTCATATCCAGTTATTTAAGTAGATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          CGCCTCAAAACCTCGGGCTTAATTGCGCTTCTTAGGGCTTTATTTTTTATCCTTACACAT
rJMSF004N22+          CGCCTCAAAACCTCGGGCTTAATTGCGCTTCTTAGGGCTTTATTTTTTATCCTTACACAT
rJMSF003D01+          CGCCTCAAAACCTCGGGCTTAATTGCGCTTCTTAGGGCTTTATTTTTTATCCTTACACAT
                      ____________________________________________________________
consensus             CGCCTCAAAACCTCGGGCTTAATTGCGCTTCTTAGGGCTTTATTTTTTATCCTTACACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016K04+          CTCATCGTATGTATTAT                                           
rJMSF004N22+          CTCATC                                                      
rJMSF003D01+          CTCATCGTATGTATTATTATATAAATATCAGTGTATAATACTATAGAGCATATGTTTTTT
                      ____________________________________________________________
consensus             CTCATCGTATGTATTATTATATAAATATCAGTGTATAATACTATAGAGCATATGTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF003D01+          CCTTTTCTGTTTTCTTTGCATTTGGATTTACAATTGTGAAAAGATCTTGATGGGAAATAT
                      ____________________________________________________________
consensus             CCTTTTCTGTTTTCTTTGCATTTGGATTTACAATTGTGAAAAGATCTTGATGGGAAATAT