Contig 013868:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051K09Sequence586013868 (4)gb|ABY47652.1|1e-69one-helix protein [Ipomoea nil]608013868 (4)gb|ABY47652.1|7e-57one-helix protein [Ipomoea nil]
JMSF009I23Sequence272013868 (4)gb|ABY47652.1|1e-10one-helix protein [Ipomoea nil]711013868 (4)gb|ABY47652.1|3e-69one-helix protein [Ipomoea nil]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051K09-                                                              ACCCTGGA
                      ____________________________________________________________
consensus                                                                 ACCCTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051K09-          CAGTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTGAAAAAGGAATGGAGTTTTCAAGAGTT
                      ____________________________________________________________
consensus             CAGTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTGAAAAAGGAATGGAGTTTTCAAGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051K09-          AAAAAGGCTTGTGGTAAGGCACAGTTTACTACAACTGAATTAACTAAAATATAGAATACA
                      ____________________________________________________________
consensus             AAAAAGGCTTGTGGTAAGGCACAGTTTACTACAACTGAATTAACTAAAATATAGAATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF051K09-          GGAAGCCATATACATACATACATTACAGAAAGACACAACATTCAGGTTGGGGGACAGACA
                      ____________________________________________________________
consensus             GGAAGCCATATACATACATACATTACAGAAAGACACAACATTCAGGTTGGGGGACAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K09+                    CTCATTCCAAGTCTAGTATTCCAAAATTTGAGAGAAGAATCTTAAGTTGAT
rJMSF009I23-                   CTCATTCCAAGTCTAGTATTCCAAAATTTGAGAGAAGAATCTTAAGTTGAT
rJMFF051K09-          AGCTAGCTCCTCATTCCAAGTCTAGTATTCCAAAATTTGAGAGAAGAATCTTAAGTTGAT
                      ____________________________________________________________
consensus             AGCTAGCTCCTCATTCCAAGTCTAGTATTCCAAAATTTGAGAGAAGAATCTTAAGTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K09+           CAACAAAGTCAGAGCCTGTGGCATACTCTGTTAACATTCCAACAGCAAATCCAAACATTG
rJMSF009I23-          CAACAAAGTCAGAGCCTGTGGCATACTCTGTTAACATTCCAACAGCAAATCCAAACATTG
rJMFF051K09-          CAACAAAGTCAGAGCCTGTGGCATACTCTGTTAACATTCCAACAGCAAATCCAAACATTG
                      ____________________________________________________________
consensus             CAACAAAGTCAGAGCCTGTGGCATACTCTGTTAACATTCCAACAGCAAATCCAAACATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K09+           CCCATCTGCCGTTGGAAATTTCATTCTTGCCAATAAAACCAAAGAAAGGGCCTTGATTGG
rJMSF009I23-          CCCATCTGCCGTTGGAAATTTCATTCTTGCCAATAAAACCAAAGAAAGGGCCTTGATTGG
rJMFF051K09-          CCCATCTGCCGTTGGAAATTTCATTCTTGCCAATAAAACCAAAGAAAGGGCCTTGATTGG
                      ____________________________________________________________
consensus             CCCATCTGCCGTTGGAAATTTCATTCTTGCCAATAAAACCAAAGAAAGGGCCTTGATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K09+           CTTCTTCAGCCTTCTTCTGCTTGAAATACTCTTGAAGCTCCTTAGCCTTTTGCCTCTGGA
rJMSF009I23-          CTTCTTCAGCCTTCTTCTGCTTGAAATACTCTTGAAGCTCCTTAGCCTTTTGCCTCTGGA
rJMFF051K09-          CTTCTTCAGCCTTCTTCTGCTTGAAATACTCTTGAAGCTCCTTAGCCTTTTGCCTCTGGA
                      ____________________________________________________________
consensus             CTTCTTCAGCCTTCTTCTGCTTGAAATACTCTTGAAGCTCCTTAGCCTTTTGCCTCTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K09+           ACTCGAGAGTAACTACACTCTTGTCCTCCACGGCCGCCGCCACCGCCGCCGGCTTGGGAG
rJMSF009I23-          ACTCGAGAGTAACTACACTCTTGTCCTCCACGGCCGCCGCCACCGCCGCCGGCTTGGGAG
rJMFF051K09-          ACTCGAGAGTAACTACACTCTTGTCCTCCACGGNCGCCGCCACCGCCGCCGGCTTGGGAG
                      ____________________________________________________________
consensus             ACTCGAGAGTAACTACACTCTTGTCCTCCACGGCCGCCGCCACCGCCGCCGGCTTGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K09+           GAGAGCTTGGCGGCGGAGAGGGTGGGACAGGCTTTACAGGCGTAGGAGGAGAAGGAGCCA
rJMSF009I23-          GAGAGCTTGGCGGCGGAGAGGGTGGGACAGGCTTTACAGGCGTAGGAGGAGAAGGAGCCA
JMSF009I23+                                            TTACAGGCGTAGGAGGAGAAGGAGCCA
rJMFF051K09-          GAGAGCTTGGCGGCGGAAAGGGTGGGACAGGCTTTACAGGCGTAGGAGGAGAAGGAGCCA
                      ____________________________________________________________
consensus             GAGAGCTTGGCGGCGGAGAGGGTGGGACAGGCTTTACAGGCGTAGGAGGAGAAGGAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF051K09+           CGGGTCTTCTGAAAGGGCCTTCAGCCTGAGAGCTCCTTA                     
rJMSF009I23-          CGGGTCTTCTGAAAGGGCCTTCAGCCTGAGAGCTCCTTA                     
JMSF009I23+           CGGGTCTTCTGAAAGGGCCTTCAGCCTGAGAGCTCCTTA                     
rJMFF051K09-          CGGGTCTTCTGAAAGGGCCTTCAGCCTGAGAGCTCCTTACTGTAAATATGATGGGCCTGG
                      ____________________________________________________________
consensus             CGGGTCTTCTGAAAGGGCCTTCAGCCTGAGAGCTCCTTACTGTAAATATGATGGGCCTGG