Contig 013857:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031P01Sequence453006601 (9)658013857 (9)
JMFF038L23Sequence136006601 (9)710013857 (9)ref|XP_011029902.1|66.6PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMFF044G16Sequence614006601 (9)611013857 (9)
JMFF048J21Sequence464006601 (9)443013857 (9)
JMFF050C24Sequence603006601 (9)644013857 (9)
JMFF050I23Sequence615006601 (9)551013857 (9)
JMSF008G19Sequence319006601 (9)700013857 (9)ref|XP_011029902.1|66.6PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMSF011J24Sequence236006601 (9)770013857 (9)ref|XP_011029902.1|98.2PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMSF034E18Sequence512006601 (9)770013857 (9)ref|XP_011029902.1|95.5PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]

Alignment

This contig is upended


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rJMSF034E18+                                                             ATGCCGCTT
rJMSF011J24+                                                   AGCAGAACTTATGCCGCTT
                      ____________________________________________________________
consensus                                                      AGCAGAACTTATGCCGCTT
 
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rJMSF008G19+                                                        TATACCAGAGAAAG
rJMSF034E18+          CCTCCANGGAGATCCTTCGCTTACTTGCAAGCAAAGTGGGAGTCTATATACCAGAGAAAG
rJMSF011J24+          CCTCCATGGAGATCCTTCGCTTACNTGCAAGCAAAGTGGGAGTCTATATACCAGAGAAAG
rJMFF038L23+                                                        TATACCAGAGAAAG
                      ____________________________________________________________
consensus             CCTCCATGGAGATCCTTCGCTTACTTGCAAGCAAAGTGGGAGTCTATATACCAGAGAAAG
 
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rJMSF008G19+          TTCAACCCCGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
rJMSF034E18+          TTCAACCCCGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
rJMSF011J24+          TTCAACCCCGACAATCCAAACATGATCCGATCCTTCGCTTCCCATCACATACAGTGCGTA
rJMFF038L23+          TTCAACCCGGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
                      ____________________________________________________________
consensus             TTCAACCCCGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
 
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rJMSF008G19+          CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMSF034E18+          CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMSF011J24+          CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMFF038L23+          CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMFF031P01+                                      TCCAACCCAATACTGAAGTAGAACGTATACTC
                      ____________________________________________________________
consensus             CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
 
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rJMSF008G19+          AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMSF034E18+          AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMSF011J24+          AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMFF038L23+          AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMFF031P01+          AGGCCTGTAAACAGCGACAGGCCACGGTTGAACCTCGGGAGGCGGAGGCGANCCTCTTTC
rJMFF044G16+                  AAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMFF050C24+                          ACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
                      ____________________________________________________________
consensus             AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
 
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rJMSF008G19+          CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMSF034E18+          CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMSF011J24+          CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF038L23+          CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF031P01+          CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF044G16+          CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF050I23+                  ATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF050C24+          CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
                      ____________________________________________________________
consensus             CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
 
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rJMSF008G19+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMSF034E18+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMSF011J24+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF038L23+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF031P01+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF044G16+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF048J21+                                                                  TCCA
rJMFF050I23+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF050C24+          AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
                      ____________________________________________________________
consensus             AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
 
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rJMSF008G19+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMSF034E18+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMSF011J24+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF038L23+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF031P01+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF044G16+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF048J21+          AGACAATGAAGTTGATTNATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF050I23+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF050C24+          AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
                      ____________________________________________________________
consensus             AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
 
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rJMSF008G19+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMSF034E18+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMSF011J24+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF038L23+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF031P01+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTN
rJMFF044G16+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF048J21+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF050I23+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF050C24+          TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
                      ____________________________________________________________
consensus             TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
 
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rJMSF008G19+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMSF034E18+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMSF011J24+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF038L23+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF031P01+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF044G16+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF048J21+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF050I23+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF050C24+          CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
                      ____________________________________________________________
consensus             CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
 
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rJMSF008G19+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMSF034E18+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMSF011J24+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF038L23+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF031P01+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF044G16+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF048J21+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF050I23+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF050C24+          ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
                      ____________________________________________________________
consensus             ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
 
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rJMSF008G19+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMSF034E18+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMSF011J24+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF038L23+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF031P01+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTNTGGGAATAATGTCTTTTTCCC
rJMFF044G16+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF048J21+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF050I23+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF050C24+          TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
                      ____________________________________________________________
consensus             TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
 
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rJMSF008G19+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMSF034E18+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMSF011J24+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF038L23+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF031P01+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGNTGGTGATTTATTATTGTTAT
rJMFF044G16+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF048J21+          TTTNATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF050I23+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF050C24+          TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
                      ____________________________________________________________
consensus             TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
 
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rJMSF008G19+          TATATATACC                                                  
rJMSF034E18+          TATATATACCAGTGGGATCTGTAATGTTCTC                             
rJMSF011J24+          TATATATACCAGTGGGATCTGTAATGTTCTC                             
rJMFF038L23+          TATATATACCAGTGGGATCTGTAATGTTCTCA                            
rJMFF031P01+          TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAAAT
rJMFF044G16+          TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
rJMFF048J21+          TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAAAT
rJMFF050I23+          TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
rJMFF050C24+          TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
                      ____________________________________________________________
consensus             TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
 
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rJMFF031P01+          AAAAATAAAATTTAAGAG                                          
rJMFF044G16+          AAAAATAAAATTTAAGAGC                                         
rJMFF048J21+          AAAAATAAAATTTAAGAGC                                         
rJMFF050I23+          AAAAATAAAATTTAAGAGC                                         
rJMFF050C24+          AAAAATAAAATTTAAGAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAAAATAAAATTTAAGAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG