Contig 013856:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032J01Sequence548011652 (6)709013856 (3)ref|XP_009799464.1|1e-20PREDICTED: zinc finger CCCH domain-containing protein 31 [Nicotiana sylvestris]
JMFF050B13Sequence631011652 (6)640013856 (3)ref|XP_010259560.1|2e-11PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Nelumbo nu
JMSF034A15Sequence684011652 (6)ref|XP_004243818.1|2e-77PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Sola708013856 (3)ref|XP_006348971.1|5e-94PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+                     AGAACGCGATGAGACTTTTTGCCACGATGCTAGAGCTCAACCTGCAACC
                      ____________________________________________________________
consensus                        AGAACGCGATGAGACTTTTTGCCACGATGCTAGAGCTCAACCTGCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          AAATGCAGGCACATTCCTCGGCATCCTATGTGCTTGCAGCCACTCAGGACTATTGCAGAA
                      ____________________________________________________________
consensus             AAATGCAGGCACATTCCTCGGCATCCTATGTGCTTGCAGCCACTCAGGACTATTGCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          AGGCCGGGAGATGTTCAAGGAGATGAGCCAGCGCTTCTCCATTGCCCCGAAACTAGACCA
                      ____________________________________________________________
consensus             AGGCCGGGAGATGTTCAAGGAGATGAGCCAGCGCTTCTCCATTGCCCCGAAACTAGACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          CTATGCTTGCTACATTGACCTCCTTGCTCGAACGGGTTGCATTGAAGAAGCGCTTGAAGT
                      ____________________________________________________________
consensus             CTATGCTTGCTACATTGACCTCCTTGCTCGAACGGGTTGCATTGAAGAAGCGCTTGAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          AGTTACCTCAATGCCTTTCGAACCAAACAATTTCGTGTGGGGGGCTCTGCTCGCTGGCTG
                      ____________________________________________________________
consensus             AGTTACCTCAATGCCTTTCGAACCAAACAATTTCGTGTGGGGGGCTCTGCTCGCTGGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          CCTGCTTCATAACAAACTAGAACTCGCCAATTTCATCTCTTCCATGCTTGTTCAGGTGGA
                      ____________________________________________________________
consensus             CCTGCTTCATAACAAACTAGAACTCGCCAATTTCATCTCTTCCATGCTTGTTCAGGTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          TCCACATAGCTCTGCTGGCTATGTGATGCTGTCCAATGCATTTGCCATAGATCATCATTG
                      ____________________________________________________________
consensus             TCCACATAGCTCTGCTGGCTATGTGATGCTGTCCAATGCATTTGCCATAGATCATCATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          GAACAATGTTTCAGGGCTGAGATCTTCCATGAAGGAAAGCGGGGTAACTAAGCAGCCCGG
                      ____________________________________________________________
consensus             GAACAATGTTTCAGGGCTGAGATCTTCCATGAAGGAAAGCGGGGTAACTAAGCAGCCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          TTGTAGCTGGATCAACATTGAAGGAAATGTGCATGAATTCCTTGCAGGATCTGCAACAAA
rJMFF032J01+                                                           TCTGCAACAAA
                      ____________________________________________________________
consensus             TTGTAGCTGGATCAACATTGAAGGAAATGTGCATGAATTCCTTGCAGGATCTGCAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          TTTTCAAGATGGAAGAATACATGATGCACTTGAGGGATTACTGAAGGAGATGAAATTACC
rJMFF032J01+          TTTTCAAGATGGAATAATACATGATGCACTTGAGGGATTACTGAAGGAGATGAAATTACC
                      ____________________________________________________________
consensus             TTTTCAAGATGGAATAATACATGATGCACTTGAGGGATTACTGAAGGAGATGAAATTACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034A15+          AAGTGCATAGA                                                 
rJMFF032J01+          AAGTGCATAGAGAATTTGATAGATTTGGTTTTCCTTTATATGGAACACAGTTTTCTTGCA
                      ____________________________________________________________
consensus             AAGTGCATAGAGAATTTGATAGATTTGGTTTTCCTTTATATGGAACACAGTTTTCTTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          GATGATGAAATCCTAGGTTCTCTTCATCGGTATCGACCCGAGTTTCTGGTTAATTCAGAT
                      ____________________________________________________________
consensus             GATGATGAAATCCTAGGTTCTCTTCATCGGTATCGACCCGAGTTTCTGGTTAATTCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          GGCCTGCCATCTTATTATTATGCAAACAATTTTCAGCATACATGTGATCTAATGTCTGAT
rJMFF050B13+                              TGCAAACAATTTTCAGCATACATGTGATCTAATGTCTGAT
                      ____________________________________________________________
consensus             GGCCTGCCATCTTATTATTATGCAAACAATTTTCAGCATACATGTGATCTAATGTCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          CAGTATGAGGATGCTGCTGGTGCATTAATTATTAACAAACTCCTTGAACAAGACCATGAA
rJMFF050B13+          CAGTATGAGGATGCTGCTGGTGCATTAATTATTAACAAACTCCTTGAACAAGACCATGAA
                      ____________________________________________________________
consensus             CAGTATGAGGATGCTGCTGGTGCATTAATTATTAACAAACTCCTTGAACAAGACCATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          ATATGGAAGTGCACTGCTGTGCCTTTTTTGGGTCAAAATGATTTTTTGGACAGTGAAGTG
rJMFF050B13+          ATATGGAAGTGCACTGCTGTGCCTTTTTTGGGTCAAAATGATTTTTTGGACAGTGAAGTG
                      ____________________________________________________________
consensus             ATATGGAAGTGCACTGCTGTGCCTTTTTTGGGTCAAAATGATTTTTTGGACAGTGAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          GCTAAAAGTTTGGCAGCTGTGGTCAAAGAGGTTGAAAAGTTGGCTAGGGAGTGTTTCTTC
rJMFF050B13+          GCTAAAAGTTTGGCAGCTGTGGTCAAAGAGGTTGAAAAGTTGGCTAGGGAGTGTTTCTTC
                      ____________________________________________________________
consensus             GCTAAAAGTTTGGCAGCTGTGGTCAAAGAGGTTGAAAAGTTGGCTAGGGAGTGTTTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          TTTCTCCGGGAGTCATTCCCTTTTGATGAAGAAAGTCTAGGGCAATTTTATGATGATGGT
rJMFF050B13+          TTTCTCCGGGAGTCATTCCCTTTTGATGAAGAAAGTCTAGGGCAATTTTATGATGATGGT
                      ____________________________________________________________
consensus             TTTCTCCGGGAGTCATTCCCTTTTGATGAAGAAAGTCTAGGGCAATTTTATGATGATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          GTTATCCCCAAAAGGCAAATGCAGCTGTCTGTGCCCATCTCCTATGTTTTCACGCTGCAT
rJMFF050B13+          GTTATCCCCAAAAGGCAAATGCAGCTGTCTGTGCCCATCTCCTATGTTTTCACGCTGCAT
                      ____________________________________________________________
consensus             GTTATCCCCAAAAGGCAAATGCAGCTGTCTGTGCCCATCTCCTATGTTTTCACGCTGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          ACTCCCACAATTGGGTCAGTTCGGTAGACACTAGTCATACAAACTAGAATGCTCACCTGT
rJMFF050B13+          ACTCCCACAATTGGGTCAGTTCGGTAGACACTAGTCATACAAACTAGAATGCTCACCTGT
                      ____________________________________________________________
consensus             ACTCCCACAATTGGGTCAGTTCGGTAGACACTAGTCATACAAACTAGAATGCTCACCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          CTAGTAATCATAGTGTAAAGACTGCTGGAAGTTTGGAAACACCTATGTGACCATTAAATT
rJMFF050B13+          CTAGTAATCATAGTGTAAAGACTGCTGGAAGTTTGGAAACACCTATGTGACCATTAAATT
                      ____________________________________________________________
consensus             CTAGTAATCATAGTGTAAAGACTGCTGGAAGTTTGGAAACACCTATGTGACCATTAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032J01+          CCTTTACAAACTTTAGGAGCTCAGCTTCTAATCTAATC                      
rJMFF050B13+          CCTTTACAAACTTTAGGAGCTCAGCTTCTAATCTAATCTATTTATATTTGGTATGCTTAT
                      ____________________________________________________________
consensus             CCTTTACAAACTTTAGGAGCTCAGCTTCTAATCTAATCTATTTATATTTGGTATGCTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050B13+          GCTCTGTAATTATTACTGGGGTTTCTGTTGTCATGCAATTATTTAGTCGGTTATCCATAG
                      ____________________________________________________________
consensus             GCTCTGTAATTATTACTGGGGTTTCTGTTGTCATGCAATTATTTAGTCGGTTATCCATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050B13+          AAAAATAGTACTTCGTACCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAAAATAGTACTTCGTACCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG