Contig 013855:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003A12Sequence752013855 (3)ref|XP_004243219.1|2e-136PREDICTED: ras-related protein RABB1c-like [Solanum lycopersicum] ref|XP_0063667
JMFF049O06Sequence648013855 (3)gb|KDP29032.1|6e-106hypothetical protein JCGZ_16421 [Jatropha curcas]609013855 (3)ref|XP_006360009.1|5e-91PREDICTED: ras-related protein RABB1c-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF049O06-                                              GCGTTTCCGTTTTCTTCCTCGTTCA
                      ____________________________________________________________
consensus                                                GCGTTTCCGTTTTCTTCCTCGTTCA
 
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JMFF049O06-           AAAAAAAAAAAAGATAGAGAGAGAATCTCTCTGGCCTGATCTCTCTCACACGTCTTCACA
                      ____________________________________________________________
consensus             AAAAAAAAAAAAGATAGAGAGAGAATCTCTCTGGCCTGATCTCTCTCACACGTCTTCACA
 
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JMFF049O06-           ATCATTATTGTTTTCATCATTATTATTTTGAATTCAAGCGCAGATACAAATTTTCATTGA
                      ____________________________________________________________
consensus             ATCATTATTGTTTTCATCATTATTATTTTGAATTCAAGCGCAGATACAAATTTTCATTGA
 
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JMFF049O06-           TTCATCGCAATTCAGATCTCCTTCGTCGCTAAGCCGGAGCTAAACGATGTCGTACGCCTA
                      ____________________________________________________________
consensus             TTCATCGCAATTCAGATCTCCTTCGTCGCTAAGCCGGAGCTAAACGATGTCGTACGCCTA
 
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JMFF049O06-           CCTCTTCAAGTACATCATCATCGGCGACACCGGAGTTGGGAAATCATGCCTTCTTTTGCA
rJMFF003A12+              TTCAAGTACATCATCATCGGCGACACCGGAGTTGGGAAATCATGCNTTCTTTTGCA
                      ____________________________________________________________
consensus             CCTCTTCAAGTACATCATCATCGGCGACACCGGAGTTGGGAAATCATGCCTTCTTTTGCA
 
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JMFF049O06-           ATTTACTGACAAACGTTTTCAACCTGTGCATGATTTGACCATTGGTGTCGAATTTGGTGC
rJMFF003A12+          ATTTACTGACAAACGTTTTCAACCTGTGCATGATTTGACCATTGGTGTCGAATTTGGTGC
                      ____________________________________________________________
consensus             ATTTACTGACAAACGTTTTCAACCTGTGCATGATTTGACCATTGGTGTCGAATTTGGTGC
 
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JMFF049O06-           TAGAATGATTACAATTGACAACAAGCCAATTAAACTACAGATTTGGGACACGGCTGGTCA
rJMFF003A12+          TAGAATGATTACAATTGACAACAAGCCAATTAAACTACAGATTTGGGACACGGCTGGTCA
rJMFF049O06+                                                             GGCTGGTCA
                      ____________________________________________________________
consensus             TAGAATGATTACAATTGACAACAAGCCAATTAAACTACAGATTTGGGACACGGCTGGTCA
 
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JMFF049O06-           AGAATCATTTAGATCTATTACAAGGTCTTACTACAGAGGTGCTGCTGGTGCATTACTAGT
rJMFF003A12+          AGAATCATTTAGATCTATTACAAGGTCTTACTACAGAGGTGCTGCTGGTGCATTACTAGT
rJMFF049O06+          AGAATCATTTAGATCTATTACAAGGTCTTACTACAGAGGTGGTGCTGGTGCATTACTAGT
                      ____________________________________________________________
consensus             AGAATCATTTAGATCTATTACAAGGTCTTACTACAGAGGTGCTGCTGGTGCATTACTAGT
 
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JMFF049O06-           TTATGATATCACAAGGCGGGAAACTTTTAACCACCTTGCTAGTTGGTTGGAAGATGCAAG
rJMFF003A12+          TTATGATATCACAAGGCGGGAAACTTTTAACCACCTTGCTAGTTGGTTGGAAGATGCAAG
rJMFF049O06+          TTATGATATCACAAGGCGGGAAACTTTTAACCACCTTGCTAGTTGGTTGGAAGATGCAAG
                      ____________________________________________________________
consensus             TTATGATATCACAAGGCGGGAAACTTTTAACCACCTTGCTAGTTGGTTGGAAGATGCAAG
 
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JMFF049O06-           GCAGCATGCAAATGCAAACATGACAGTAATGTTGATAGGGAACAAGTGTGATCTTGCTCA
rJMFF003A12+          GCAGCATGCAAATGCAAACATGACAGTAATGTTGATAGGGAACAAGTGTGATCTTGCTCA
rJMFF049O06+          GCAGCATGCAAATGCAAACATGACAGTAATGTTGATAGGGAACAAGTGTGATCTTGCTCA
                      ____________________________________________________________
consensus             GCAGCATGCAAATGCAAACATGACAGTAATGTTGATAGGGAACAAGTGTGATCTTGCTCA
 
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JMFF049O06-           CAGAAGAGCTGTTAGCACAGAGGAAGGCGAGCAGTTTGCCAAGGAAAACGGGTTAATATT
rJMFF003A12+          CAGAAGAGCTGTTAGCACAGAGGAAGGCGAGCAGTTTGCCAAGGAAAACGGTTTAATATT
rJMFF049O06+          CAGAAGAGCTGTTAGCACAGAGGAAGGCGAGCAGTTTGCCAAGGAAAACGGTTTAATATT
                      ____________________________________________________________
consensus             CAGAAGAGCTGTTAGCACAGAGGAAGGCGAGCAGTTTGCCAAGGAAAACGGTTTAATATT
 
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JMFF049O06-           TATGGAGGCCTCTGCTAAAACAG                                     
rJMFF003A12+          TATGGAGGCCTCTGCTAAAACAGCACAGAATGTGGAGGAGGCATTTATCAGAACCGCCTC
rJMFF049O06+          TATGGAGGCCTCTGCTAAAACAGCACAGAATGTGGAGGAGGCATTTATCAGAACCGCCTC
                      ____________________________________________________________
consensus             TATGGAGGCCTCTGCTAAAACAGCACAGAATGTGGAGGAGGCATTTATCAGAACCGCCTC
 
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rJMFF003A12+          AACAATATATAAGAAAATACAGGAGGGAGCTTTTGACATATCCAATGAGTCTTATGGGAT
rJMFF049O06+          AACAATATATAAGAAAATACAGGAGGGAGCTTTTGACATATCCAATGAGTCTTATGGGAT
                      ____________________________________________________________
consensus             AACAATATATAAGAAAATACAGGAGGGAGCTTTTGACATATCCAATGAGTCTTATGGGAT
 
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rJMFF003A12+          AAAGGTTGGTTATGGTGGCATCCCGGGTCCATCACTCGGAAGAGATGGAGCTCCTGCTCC
rJMFF049O06+          AAAGGTTGGTTATGGTGGCATCCCGGGTCCATCACTCGGAAGAGATGGAGCTCCTGCTCC
                      ____________________________________________________________
consensus             AAAGGTTGGTTATGGTGGCATCCCGGGTCCATCACTCGGAAGAGATGGAGCTCCTGCTCC
 
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rJMFF003A12+          AGGAGGGGGTTGCTGCAGCTGAAAA                                   
rJMFF049O06+          AGGAGGGGGTTGCTGCAGCTGAAAATGGGACGTAATTTCTTTTTAGTAAATGCTTGTTTC
                      ____________________________________________________________
consensus             AGGAGGGGGTTGCTGCAGCTGAAAATGGGACGTAATTTCTTTTTAGTAAATGCTTGTTTC
 
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rJMFF049O06+          GTTGTTAATTCGTGACTAATTGTTCTTTGTTTTTCAATTGTTCAAAAGCTTACATGTATA
                      ____________________________________________________________
consensus             GTTGTTAATTCGTGACTAATTGTTCTTTGTTTTTCAATTGTTCAAAAGCTTACATGTATA
 
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rJMFF049O06+          AGTGGTGTATAATGTAATACAACAGCCAGCATTATGGATGTGAATAGATTGCTTCAAATT
                      ____________________________________________________________
consensus             AGTGGTGTATAATGTAATACAACAGCCAGCATTATGGATGTGAATAGATTGCTTCAAATT