| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012L09 | Sequence | 533 | 013853 (9) | gb|EYU33869.1| | 8e-35 | hypothetical protein MIMGU_mgv1a010099mg [Erythranthe guttata] | 794 | 013853 (9) | ref|NP_001234183.1| | 5e-88 | plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas |
| JMFF020P02 | Sequence | 534 | 013853 (9) | ref|NP_001234183.1| | 2e-47 | plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas | |||||
| JMFF023L18 | Sequence | 748 | 013853 (9) | ref|NP_001275061.1| | 4e-139 | light-induced protein, chloroplastic [Solanum tuberosum] sp|P80471.2|LIPC_SOLTU | |||||
| JMFF029D17 | Sequence | 527 | 013853 (9) | ref|NP_001234183.1| | 9e-46 | plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas | 758 | 013853 (9) | ref|NP_001275061.1| | 2e-134 | light-induced protein, chloroplastic [Solanum tuberosum] sp|P80471.2|LIPC_SOLTU |
| JMFF038H21 | Sequence | 453 | 013853 (9) | ref|NP_001234183.1| | 7e-29 | plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas | 779 | 013853 (9) | ref|NP_001275061.1| | 4e-132 | light-induced protein, chloroplastic [Solanum tuberosum] sp|P80471.2|LIPC_SOLTU |
| JMFF049M20 | Sequence | 472 | 013853 (9) | ref|XP_009783682.1| | 1e-22 | PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF029D17- ATTCTGTTTTCTCATAGGCATCGAATTT
JMFF038H21- ATTCTGTTTTCTCATAGGCATCGAATTT
JMFF020P02- ATTCTGNTTTCTCATAGGCATCGAATTT
JMFF012L09- ATTCTGTTTTCTCATAGGCATCGAATTT
____________________________________________________________
consensus ATTCTGTTTTCTCATAGGCATCGAATTT
. : . : . : . : . : . :
JMFF029D17- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
JMFF038H21- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
JMFF020P02- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
JMFF012L09- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
____________________________________________________________
consensus CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
. : . : . : . : . : . :
JMFF029D17- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
JMFF038H21- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
JMFF020P02- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
JMFF012L09- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCC-GT
____________________________________________________________
consensus ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
. : . : . : . : . : . :
JMFF029D17- GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
JMFF038H21- GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
JMFF020P02- GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
JMFF012L09- AAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
____________________________________________________________
consensus GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
. : . : . : . : . : . :
JMFF029D17- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
JMFF038H21- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
JMFF020P02- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
JMFF012L09- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
____________________________________________________________
consensus GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
. : . : . : . : . : . :
JMFF029D17- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
JMFF038H21- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
JMFF020P02- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
JMFF012L09- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAANACGAACCGGC
____________________________________________________________
consensus AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
. : . : . : . : . : . :
JMFF029D17- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
JMFF038H21- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
JMFF020P02- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
JMFF012L09- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCNTTCTACGGGACCAA
rJMFF023L18+ GCTGACTGAAACCGATGTGTNGAAGAANCAGCTGGTGGATTCTTTNTACGGGACCAA
rJMFF029D17+ TACGGGACCAA
rJMFF038H21+ CAA
____________________________________________________________
consensus CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
. : . : . : . : . : . :
JMFF029D17- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGAAGCT
JMFF038H21- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
JMFF020P02- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
JMFF012L09- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
rJMFF023L18+ TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
rJMFF029D17+ TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGAAGCT
rJMFF038H21+ TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
____________________________________________________________
consensus TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
. : . : . : . : . : . :
JMFF029D17- GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
JMFF038H21- GGAGG
JMFF020P02- GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
JMFF012L09- GGAGGCTAAGNACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGNCAAATG
rJMFF023L18+ GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
rJMFF029D17+ GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
rJMFF038H21+ GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
rJMFF012L09+ ACGGAGGCGCTGACTCTCNTCAACGGCAAATG
____________________________________________________________
consensus GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
. : . : . : . : . : . :
JMFF029D17- GGTTCTTGCGTACACGTCT
JMFF020P02- GGTTCTTGCGTACACGTCTTTTATTG
JMFF012L09- GGTTCTTGCGTACACGTCTTTTATTG
rJMFF023L18+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
rJMFF029D17+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
rJMFF038H21+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
rJMFF012L09+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
____________________________________________________________
consensus GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
. : . : . : . : . : . :
rJMFF023L18+ TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
rJMFF029D17+ TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
rJMFF038H21+ TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
rJMFF012L09+ TCTGGGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
____________________________________________________________
consensus TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
. : . : . : . : . : . :
rJMFF023L18+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
rJMFF029D17+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
rJMFF038H21+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
rJMFF012L09+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
____________________________________________________________
consensus ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
. : . : . : . : . : . :
rJMFF023L18+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
rJMFF029D17+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
rJMFF038H21+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
rJMFF012L09+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
____________________________________________________________
consensus AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
. : . : . : . : . : . :
rJMFF023L18+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
rJMFF029D17+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
rJMFF038H21+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
rJMFF012L09+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
____________________________________________________________
consensus AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
. : . : . : . : . : . :
rJMFF023L18+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF029D17+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF038H21+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF012L09+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF049M20+ TTCAAAGGTTTGATTCATTCTCTTCAGGATGGGGCTTCTTCAGTTGTGAAGT
____________________________________________________________
consensus TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
. : . : . : . : . : . :
rJMFF023L18+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF029D17+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF038H21+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF012L09+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF049M20+ CCATTTCTAGCCATCCGCCATAGAAGTTTTCCCGAGCCAATAGCAATGGTGAGTCGTGGC
____________________________________________________________
consensus CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
. : . : . : . : . : . :
rJMFF023L18+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF029D17+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF038H21+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF012L09+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF049M20+ TTTTAATTGCGTATCTGGACAGAGAGGTTGGGATTTCAAGAGGAGAGTTGGGCAGTATTT
____________________________________________________________
consensus TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
. : . : . : . : . : . :
rJMFF023L18+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF029D17+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF038H21+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF012L09+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF049M20+ TTGTGGTGATCAAGGAAGGCATCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTTTTT
____________________________________________________________
consensus TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
. : . : . : . : . : . :
rJMFF023L18+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTT
rJMFF029D17+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
rJMFF038H21+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
rJMFF012L09+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
rJMFF049M20+ TGTTTTAGTATGTCCCCTGCCTTTCAAGCCTTGTATTTGTAATTAAGAATGTGAAAAATG
____________________________________________________________
consensus TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
. : . : . : . : . : . :
rJMFF029D17+ GTCTAAATGAGCCAAATAAACTGCTAGT
rJMFF038H21+ GTCTAAATGAGCCAAATAAACTGCTAGTTGTTATTCGTAGGCTTGTTAATGAAATCC
rJMFF012L09+ GTCTAAATGAGCCAAATAAACTGCTAGTTGTTATTCGTAGGCTTGTTAATGAAATCCATC
rJMFF049M20+ GTTTAAAGGAGCCAAATAACCTGCTAGTTGTTATTCGTAGGCTTGTTAAAGAAATCCATC
____________________________________________________________
consensus GTCTAAATGAGCCAAATAAACTGCTAGTTGTTATTCGTAGGCTTGTTAATGAAATCCATC
. : . : . : . : . : . :
rJMFF012L09+ ATATTTGTTCAGAAATCTTGGATGCATTGAATTAGAAGATTTACTAGGGTGGACAGAAGT
rJMFF049M20+ ATATTGGTTCAGAAATATTGGATGCATTGAATTTGAAGATTTTATGGGGTGGACAGAAGT
____________________________________________________________
consensus ATATTTGTTCAGAAATCTTGGATGCATTGAATTTGAAGATTTTCTGGGGTGGACAGAAGT
. : . : . : . : . : . :
rJMFF012L09+ GTTGCTAAAAAAAATCACATTTATATGATGAAAGATTCAGTT
rJMFF049M20+ GTTGTTAAAAAAAATCACATTTATTTGACGAAAGATTCAGTTTTGAACTGTTGGTTTGTC
____________________________________________________________
consensus GTTGTTAAAAAAAATCACATTTATTTGATGAAAGATTCAGTTTTGAACTGTTGGTTTGTC