| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017K01 | Sequence | 697 | 013852 (7) | gb|KJB10389.1| | 4e-82 | hypothetical protein B456_001G207200 [Gossypium raimondii] | |||||
| JMFF030D03 | Sequence | 489 | 013852 (7) | emb|CDP02342.1| | 4e-46 | unnamed protein product [Coffea canephora] | 696 | 013852 (7) | gb|KJB10389.1| | 4e-82 | hypothetical protein B456_001G207200 [Gossypium raimondii] |
| JMFF049M04 | Sequence | 635 | 013852 (7) | emb|CDP02342.1| | 1e-83 | unnamed protein product [Coffea canephora] | 605 | 013852 (7) | gb|KJB10389.1| | 9e-50 | hypothetical protein B456_001G207200 [Gossypium raimondii] |
| JMSF039F19 | Sequence | 684 | 013852 (7) | emb|CDP02342.1| | 3e-87 | unnamed protein product [Coffea canephora] | 844 | 013852 (7) | ref|XP_007032874.1| | 2e-121 | DSBA oxidoreductase family protein isoform 2 [Theobroma cacao] gb|EOY03800.1| DS |
This contig is upended
. : . : . : . : . : . :
JMFF030D03- AATGTAGACGTACTTTTGGGAGAAGGGGGTAGTTGAAAG
JMFF049M04- GAAAG
JMSF039F19- TAGACGTACTTTTGGGAGAAGGGGGTAGTTGAAAG
____________________________________________________________
consensus AATGTAGACGTACTTTTGGGAGAAGGGGGTAGTTGAAAG
. : . : . : . : . : . :
JMFF030D03- ATTTTCTTCTCTGCAAATTTCTCCCGTTCCGTTGGCAGTTTCAGACGTGCTGTCGGACAA
JMFF049M04- ATTTTCTTCTCTGCAAATTTCTCCCGTTCCGTTGGCAGTTTCAGACGTGCTGTCGACCAA
JMSF039F19- ATTTTCTTCTCTGCAAATTTCTCCCGTTCCGTTGGCAGTTTCAGACGTGCTGTCGGACAA
____________________________________________________________
consensus ATTTTCTTCTCTGCAAATTTCTCCCGTTCCGTTGGCAGTTTCAGACGTGCTGTCGGACAA
. : . : . : . : . : . :
JMFF030D03- AAACGCGGGTTTTGCGGGACGGGCGTGTATATATAGTCGAAATAGGATCAAGAACTTGAT
JMFF049M04- AAACGCGGGTTTTGCGGGACGGGCGTGTATATATAGTCGAAATAGGATCAAGAACTTGAT
JMSF039F19- AAACGCGGGTTTTGCGGGACGGGCGTGTATATATAGTCGAAATAGGATCAAGAACTTGAT
____________________________________________________________
consensus AAACGCGGGTTTTGCGGGACGGGCGTGTATATATAGTCGAAATAGGATCAAGAACTTGAT
. : . : . : . : . : . :
JMFF030D03- ACTCGGTTCATTCTTGAAATCTTGAAGTGGCATGCGATTGGTGTCTCTACAGAAATTCCA
JMFF049M04- ACTCGGTTCATTCTTGAAATCTTGAAGTGGCATGCGATTGGTGTCTCTACAGAAATTCCA
JMSF039F19- ACTCGGTTCATTCTTGAAATCTTGAAGTGGCATGCGATTGGTGTCTCTACAGAAATTCCA
____________________________________________________________
consensus ACTCGGTTCATTCTTGAAATCTTGAAGTGGCATGCGATTGGTGTCTCTACAGAAATTCCA
. : . : . : . : . : . :
JMFF030D03- GGTTTCGCGATTTCCCAGATTCATGGCTCAATCATCTGCTAACAGCAGTGGGAGGAAGCT
JMFF049M04- GGTTTCGCGATTTCCCAGATTCATGGCTCAATCATCTGCTAACAGCAGTGGGAGGAAGCT
JMSF039F19- GGTTTCGCGATTTCCCAGATTCATGGCTCAATCATCTGCTAACAGCAGTGGGAGGAAGCT
rJMSF039F19+ CAGTGGGAGGAAGCT
____________________________________________________________
consensus GGTTTCGCGATTTCCCAGATTCATGGCTCAATCATCTGCTAACAGCAGTGGGAGGAAGCT
. : . : . : . : . : . :
JMFF030D03- TATTCATATTGATATTAGTTCAGATAGTGTATGCCCATGGTGCTTTGTTGGGAAAAGAAA
JMFF049M04- TATTCATATTGATATTAGTTCAGATAGTGTATGCCCATGGTGCTTTGTTGGGAAAAGAAA
JMSF039F19- TATTCATATTGATATTAGTTCAGATAGTGTATGCCCATGGTGCTTTGTTGGGAAAAGAAA
rJMSF039F19+ TATTCATATTGATATTAGTTCAGATAGTGTATGCCCATGGTGCTTTGTTGGGAAAAGAAA
____________________________________________________________
consensus TATTCATATTGATATTAGTTCAGATAGTGTATGCCCATGGTGCTTTGTTGGGAAAAGAAA
. : . : . : . : . : . :
JMFF030D03- CCTCGATAAAGCTATAGCTTCTTCCAAGGATCAGTACGATTTTGAGATCAAATGGCATCC
JMFF049M04- CCTCGATAAAGCTATAGCTTCTTCCAAGGATCAGTACGATTTTGAGATCAAATGGCATCC
JMSF039F19- CCTCGATAAAGCTATAGCTTCTTCCAAGGATCAGTACGATTTTGAGATCAAATGGCATCC
rJMSF039F19+ CCTCGATAAAGCTATAGCTTCTTCCAAGGATCAGTACGATTTTGAGATCAAATGGCATCC
____________________________________________________________
consensus CCTCGATAAAGCTATAGCTTCTTCCAAGGATCAGTACGATTTTGAGATCAAATGGCATCC
. : . : . : . : . : . :
JMFF030D03- CTATTTTCTTGATCCTTCTGCGCCCAAAGAAGGTGTTAGTAAGAAAGAGTTCTATCTGCG
JMFF049M04- CTATTTTCTTGATCCTTCTGCGCCCAAAGAAGGTGTTAGTAAGAAAGAGTTCTATCTGCG
JMSF039F19- CTATTTTCTTGATCCTTCTGCGCCCAAAGAAGGTGTTAGTAAGAAAGAGTTCTATCTGCG
rJMSF039F19+ CTATTTTCTTGATCCTTCTGCGCCCAAAGAAGGTGTTAGTAAGAAAGAGTTCTATCTGCG
rJMFF030D03+ CTGCGCCCAAAGAAGGTGTTAGTAAGAAAGAGTTCTATCTGCG
rJMFF017K01+ TGCGCCCAAAGAAGGTGTTAGTAAGAAAGAGTTCTATCTGCG
____________________________________________________________
consensus CTATTTTCTTGATCCTTCTGCGCCCAAAGAAGGTGTTAGTAAGAAAGAGTTCTATCTGCG
. : . : . : . : . : . :
JMFF030D03- AAAGTTTGGAGCTCGAAGTGAACAGCTTGG
JMFF049M04- AAAGTTTGGAGCTCGAAGTGAACAGCTTGGACGGAGAATGACTGAGATTTTNCAGGGTCT
JMSF039F19- AAAGTTTGGAGCTCGAAGTGAACAGCTTGGACGGAGAATGACTGAGATTTTCAAGGGTCT
rJMSF039F19+ AAAGTTTGGAGCTCGAAGTGAACAGCTTGGACGGAGAATGACTGAGATTTTCAAGGGTCT
rJMFF030D03+ AAAGTTTGGAGCTCGAAGTGAACAGCTTGGACGGAGAATGACTGAGATTTTCAAGGGTCT
rJMFF017K01+ AAAGTTTGGAGCTCGAAGTGAACAGCTTGGACGGAGAATGACTGAGATTTTCAAGGGTCT
____________________________________________________________
consensus AAAGTTTGGAGCTCGAAGTGAACAGCTTGGACGGAGAATGACTGAGATTTTCAAGGGTCT
. : . : . : . : . : . :
JMFF049M04- CGGGATGGAATATGACACATCTGGACTTACGGGAAACACTCTGGACAGTCACCGGCTCAT
JMSF039F19- CGGGATGGAATATGACACATCTGGACTTACGGGAAACACTCTGGACAGTCACCGGCTCAT
rJMSF039F19+ CGGGATGGAATATGACACATCTGGACTTACGGGAAACACTCTGGACAGTCACCGGCTCAT
rJMFF030D03+ CGGGATGGAATATGACACATCTGGACTTACGGGAAACACTCTGGACAGTCACCGGCTCAT
rJMFF017K01+ CGGGATGGAATATGACACATCTGGACTTACGGGAAACACTCTGGACAGTCACCGGCTCAT
____________________________________________________________
consensus CGGGATGGAATATGACACATCTGGACTTACGGGAAACACTCTGGACAGTCACCGGCTCAT
. : . : . : . : . : . :
JMFF049M04- ATATTTTGCGGGAAAACAAGGCCAGGATAAGCAACACAAACTTGTCGAGGAGCTTTTCAT
JMSF039F19- ATATTTTGCGGGAAAACAAGGCCAGGATAAGCAACACAAACTTGTCGAGGAGCTTTTCAT
rJMSF039F19+ ATATTTTGCGGGAAAACAAGGCCAGGATAAGCAACACAAACTTGTCGAGGAGCTTTTCAT
rJMFF030D03+ ATATTTTGCGGGAAAACAAGGCCAGGATAAGCAACACAAACTTGTCGAGGAGCTTTTCAT
rJMFF017K01+ ATATTTTGCGGGAAAACAAGGCCAGGATAAGCAACACAAACTTGTCGAGGAGCTTTTCAT
rJMFF049M04+ TTTGCGGGAAAACAAGGCCAGGATAAGCAACACAAACTTGTCGAGGAGCTTTTCAT
____________________________________________________________
consensus ATATTTTGCGGGAAAACAAGGCCAGGATAAGCAACACAAACTTGTCGAGGAGCTTTTCAT
. : . : . : . : . : . :
JMFF049M04- TGGCTATTTCACGCAGGGAAAGTATATAGG
JMSF039F19- TGGCTATTTCACGCAGGGAAAGTATATAGGTGACAAGGAGTTTCTCA
rJMSF039F19+ TGGCTATTTCACGCAGGGAAAGTATATAGGTGACAAGGAGTTTCTCAAAGAAGCTGCTAG
rJMFF030D03+ TGGCTATTTCACGCAGGGAAAGTATATAGGTGACAAGGAGTTTCTCAAAGAAGCTGCTAG
rJMFF017K01+ TGGCTATTTCACGCAGGGAAAGTATATAGGTGACAAGGAGTTTCTCAAAGAAGCTGCTAG
rJMFF049M04+ TGGCTATTTCACGCAGGGAAAGTATATAGGTGACAAGGAGTTTCTCAAAGAAGCTGCTAG
____________________________________________________________
consensus TGGCTATTTCACGCAGGGAAAGTATATAGGTGACAAGGAGTTTCTCAAAGAAGCTGCTAG
. : . : . : . : . : . :
rJMSF039F19+ AAAGGTCGGGGTTGAAGGAGCAGAAGAGTTTCTCGAGGATCCAAACAATGGATTGAAGGA
rJMFF030D03+ AAAGGTCGGGGTTGAAGGAGCAGAAGAGTTTCTCGAGGATCCAAACAATGGATTGAAGGA
rJMFF017K01+ AAAGGTCGGGGTTGAAGGAGCAGAAGAGTTTCTCGAGGATCCAAACAATGGATTGAAGGA
rJMFF049M04+ AAAGGTCGGGGTTGAAGGAGCAGAAGAGTTTCTCGAGGATCCAAACAATGGATTGAAGGA
____________________________________________________________
consensus AAAGGTCGGGGTTGAAGGAGCAGAAGAGTTTCTCGAGGATCCAAACAATGGATTGAAGGA
. : . : . : . : . : . :
rJMSF039F19+ GGTTAATGAAGAACTGCAACAATATTCATCCAATATCAGTGGAGTCCCGTATTATGTGAT
rJMFF030D03+ GGTTAATGAAGAACTGCAACAATATTCATCCAATATCAGTGGAGTCCCGTATTATGTGAT
rJMFF017K01+ GGTTAATGAAGAACTGCAACAATATTCATCCAATATCAGTGGAGTCCCGTATTATGTGAT
rJMFF049M04+ GGTTAATGAAGAACTGCAACAATATTCATCCAATATCAGTGGAGTCCCGTATTATGTGAT
____________________________________________________________
consensus GGTTAATGAAGAACTGCAACAATATTCATCCAATATCAGTGGAGTCCCGTATTATGTGAT
. : . : . : . : . : . :
rJMSF039F19+ TAATGGGAAATCCAAGCTGAGTGGTGGCCAGCCTCCTGAGACCTTCCTGCAGGCCTTTCA
rJMFF030D03+ TAATGGGAAATCCAAGCTGAGTGGTGGCCAGCCTCCTGAGACCTTCCTGCAGGCCTTTCA
rJMFF017K01+ TAATGGGAAATCCAAGCTGAGTGGTGGCCAGCCTCCTGAGACCTTCCTGCAGGCCTTTCA
rJMFF049M04+ TAATGGGAAATCCAAGCTGAGTGGTGGCCAGCCTCCTGAGACCTTCCTGCAGGCCTTTCA
____________________________________________________________
consensus TAATGGGAAATCCAAGCTGAGTGGTGGCCAGCCTCCTGAGACCTTCCTGCAGGCCTTTCA
. : . : . : . : . : . :
rJMSF039F19+ AACAGCCTGAATTAGCTAAAGTTGTCTGAGAGGTTGTGTTGAGATCAAAGATGCAAGTTC
rJMFF030D03+ AACAGCCTGAATTAGCTAAAGTTGTCTGAGAGGTTGTGTTGAGATCAAAGATGCAAGTTC
rJMFF017K01+ AACAGCCTGAATTAGCTAAAGTTGTCTGAGAGGTTGTGTTGAGATCAAAGATGCAAGTTC
rJMFF049M04+ AACAGCCTGAATTAGCTAAAGTTGTCTGAGAGGTTGTGTTGAGATCAAAGATGCAAGTTC
____________________________________________________________
consensus AACAGCCTGAATTAGCTAAAGTTGTCTGAGAGGTTGTGTTGAGATCAAAGATGCAAGTTC
. : . : . : . : . : . :
rJMSF039F19+ TCTATGTTTGTCCACAACAAATTTCTGGCTTTTTTTCCTGTGAAATAAGCTGTCATTCTT
rJMFF030D03+ TCTATGTTTGTCCACAACAAATTTCTGGCTTTTTTTCCTGTGAAATAAGCTGTCATTCTT
rJMFF017K01+ TCTATGTTTGTCCACAACAAATTTCTGGCTTTTTTTCCTGTGAAATAAGCTGTCATTCTT
rJMFF049M04+ TCTATGTTTGTCCACAACAAATTTCTGGCTTTTTTTCCTGTGAAATAAGCTGTCATTCTT
____________________________________________________________
consensus TCTATGTTTGTCCACAACAAATTTCTGGCTTTTTTTCCTGTGAAATAAGCTGTCATTCTT
. : . : . : . : . : . :
rJMSF039F19+ ATCAGCCATTAACTTGATGCCAATAAAGTTGATTGTGTATGTAATTAANCAAGTTCTTGG
rJMFF030D03+ ATCAGCCATTAACTTGATGCCAATAAAGTTGATTGTGTATGTAATTAA-CAAGTTCTTGG
rJMFF017K01+ ATCAGCCATTAACTTGATGCCAATAAAGTTGATTGTGTATGTAATTAA-CAAGTTCTTGG
rJMFF049M04+ ATCAGCCATTAACTTGATGCCAATAAAGTTGATTGTGTATGTAATTAA-CAAGTTCTTGG
____________________________________________________________
consensus ATCAGCCATTAACTTGATGCCAATAAAGTTGATTGTGTATGTAATTAA-CAAGTTCTTGG
. : . : . : . : . : . :
rJMSF039F19+ CACAGTATTTTGTATCCAGGATATTATGATTCTTAGATCTT
rJMFF030D03+ CACAGTATTTTGTAT-CAGGATATTATGATTCTTAGATCTTTACTTCATGCCTTT
rJMFF017K01+ CACAGTATTTTGTAT-CAGGATATTATGATTCTTAGATCTTTACTTCATGCCTTT
rJMFF049M04+ CACAGTATTTTGTAT-CAGGATATTATGATTCTTAGATCTTTACTTCATGCCTTTTTAAA
____________________________________________________________
consensus CACAGTATTTTGTAT-CAGGATATTATGATTCTTAGATCTTTACTTCATGCCTTTTTAAA
. : . : . : . : . : . :
rJMFF049M04+ TATGGAAAATGCTAATTTTACGAAACCCGATATCATTTCATATGACTTTTGAGTTGTGAC
____________________________________________________________
consensus TATGGAAAATGCTAATTTTACGAAACCCGATATCATTTCATATGACTTTTGAGTTGTGAC