Contig 013842:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L13Sequence731013842 (7)ref|XP_009631478.1|4e-125PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]
JMFF048G21Sequence547009531 (7)ref|XP_009631478.1|2e-84PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]559013842 (7)ref|XP_009631478.1|6e-39PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]
JMSF010E01Sequence394009531 (7)ref|XP_009631478.1|4e-41PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]704013842 (7)ref|XP_009631478.1|1e-108PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]
JMSF020J06Sequence664009531 (7)ref|XP_009631478.1|2e-113PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]701013842 (7)ref|XP_009631478.1|3e-106PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]
JMSF022M24Sequence634009531 (7)ref|XP_009631478.1|3e-107PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]722013842 (7)ref|XP_009631478.1|2e-131PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]
JMSF040H14Sequence660009531 (7)ref|XP_009631478.1|2e-94PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]770013842 (7)ref|XP_009631478.1|1e-125PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]
JMSF046C04Sequence777009531 (7)ref|XP_009631478.1|2e-106PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis]745013842 (7)ref|XP_009803877.1|9e-130PREDICTED: root phototropism protein 3-like [Nicotiana sylvestris] ref|XP_009803

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022M24+ ANTTTCAAGTCCTGGCTGA
rJMSF046C04+ CCTGGCTGA
                      ____________________________________________________________
consensus ANTTTCAAGTCCTGGCTGA
 
. : . : . : . : . : . :
rJMSF022M24+ GGCTTTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
rJMSF046C04+ GGCTTTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
rJMFF004L13+ TTACCAGAATCAGCAAGAACCTGTGATGATGGCNTNTATAGAGCCATAGACTCCTA
rJMSF040H14+ TTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
                      ____________________________________________________________
consensus GGCTTTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
 
. : . : . : . : . : . :
rJMSF022M24+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMSF046C04+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMFF004L13+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMSF040H14+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMSF020J06+ TCATCCAACGCTCTCAGAACACGAGAGGANGAGGCTATGTCGAGTGATGGA
rJMSF010E01+ GCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
                      ____________________________________________________________
consensus TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
 
. : . : . : . : . : . :
rJMSF022M24+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF046C04+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMFF004L13+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF040H14+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF020J06+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF010E01+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
                      ____________________________________________________________
consensus TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
 
. : . : . : . : . : . :
rJMSF022M24+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF046C04+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMFF004L13+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF040H14+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF020J06+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF010E01+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
                      ____________________________________________________________
consensus CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
 
. : . : . : . : . : . :
rJMSF022M24+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMSF046C04+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMFF004L13+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMSF040H14+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMSF020J06+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTNTGCTGTCAAACCGCAAAAC
rJMSF010E01+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
                      ____________________________________________________________
consensus CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
 
. : . : . : . : . : . :
rJMSF022M24+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF046C04+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMFF004L13+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF040H14+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF020J06+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF010E01+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMFF048G21+ ACAGCAGCCAAGAAGGATAT
                      ____________________________________________________________
consensus CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
 
. : . : . : . : . : . :
rJMSF022M24+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF046C04+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMFF004L13+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF040H14+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF020J06+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF010E01+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMFF048G21+ CAACACGCTCAAGTNTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
                      ____________________________________________________________
consensus CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
 
. : . : . : . : . : . :
rJMSF022M24+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF046C04+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMFF004L13+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF040H14+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF020J06+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF010E01+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMFF048G21+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
                      ____________________________________________________________
consensus GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
 
. : . : . : . : . : . :
rJMSF022M24+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF046C04+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMFF004L13+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF040H14+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF020J06+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF010E01+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMFF048G21+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
                      ____________________________________________________________
consensus GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
 
. : . : . : . : . : . :
rJMSF022M24+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF046C04+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMFF004L13+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF040H14+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF020J06+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF010E01+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMFF048G21+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
                      ____________________________________________________________
consensus TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
 
. : . : . : . : . : . :
rJMSF022M24+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF046C04+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMFF004L13+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF040H14+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF020J06+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF010E01+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMFF048G21+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
                      ____________________________________________________________
consensus TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
 
. : . : . : . : . : . :
rJMSF022M24+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAAC
rJMSF046C04+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAACCACCTGAGACCATAGCA
rJMFF004L13+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMSF040H14+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMSF020J06+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMSF010E01+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMFF048G21+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
                      ____________________________________________________________
consensus ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
 
. : . : . : . : . : . :
rJMSF046C04+ TCAGTT
rJMFF004L13+ TCAGTTTATCATCAAT
rJMSF040H14+ TCAGTTTATCATCAATTTCATGTTCTTTATA
rJMSF020J06+ TCAGTTTATCATCAATTTCATGTTCTTTATA
rJMSF010E01+ TCAGTTTATCATCAATTTCATGTTCTTTATAC
rJMFF048G21+ TCAGTTTATCATCAATTTCATGTTCTTTATACAGTTGATTGATTGATCCATCTCCCTGTA
                      ____________________________________________________________
consensus TCAGTTTATCATCAATTTCATGTTCTTTATACAGTTGATTGATTGATCCATCTCCCTGTA
 
. : . : . : . : . : . :
rJMFF048G21+ ATCACTACCTTCATAAATTCATATTTTTAGCTGCATCAACTGAAACCCATATTGTTATCA
                      ____________________________________________________________
consensus ATCACTACCTTCATAAATTCATATTTTTAGCTGCATCAACTGAAACCCATATTGTTATCA
 
. : . : . : . : . : . :
rJMFF048G21+ GCATCAGAACCTATACAATTATGTTAGTCGTCGTAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus GCATCAGAACCTATACAATTATGTTAGTCGTCGTAAAAAAAAAAAAAAACTCTCCAGGGT