| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004L13 | Sequence | 731 | 013842 (7) | ref|XP_009631478.1| | 4e-125 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] | |||||
| JMFF048G21 | Sequence | 547 | 009531 (7) | ref|XP_009631478.1| | 2e-84 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] | 559 | 013842 (7) | ref|XP_009631478.1| | 6e-39 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] |
| JMSF010E01 | Sequence | 394 | 009531 (7) | ref|XP_009631478.1| | 4e-41 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] | 704 | 013842 (7) | ref|XP_009631478.1| | 1e-108 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] |
| JMSF020J06 | Sequence | 664 | 009531 (7) | ref|XP_009631478.1| | 2e-113 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] | 701 | 013842 (7) | ref|XP_009631478.1| | 3e-106 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] |
| JMSF022M24 | Sequence | 634 | 009531 (7) | ref|XP_009631478.1| | 3e-107 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] | 722 | 013842 (7) | ref|XP_009631478.1| | 2e-131 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] |
| JMSF040H14 | Sequence | 660 | 009531 (7) | ref|XP_009631478.1| | 2e-94 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] | 770 | 013842 (7) | ref|XP_009631478.1| | 1e-125 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] |
| JMSF046C04 | Sequence | 777 | 009531 (7) | ref|XP_009631478.1| | 2e-106 | PREDICTED: root phototropism protein 3-like [Nicotiana tomentosiformis] | 745 | 013842 (7) | ref|XP_009803877.1| | 9e-130 | PREDICTED: root phototropism protein 3-like [Nicotiana sylvestris] ref|XP_009803 |
This contig is upended
. : . : . : . : . : . :
rJMSF022M24+ ANTTTCAAGTCCTGGCTGA
rJMSF046C04+ CCTGGCTGA
____________________________________________________________
consensus ANTTTCAAGTCCTGGCTGA
. : . : . : . : . : . :
rJMSF022M24+ GGCTTTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
rJMSF046C04+ GGCTTTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
rJMFF004L13+ TTACCAGAATCAGCAAGAACCTGTGATGATGGCNTNTATAGAGCCATAGACTCCTA
rJMSF040H14+ TTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
____________________________________________________________
consensus GGCTTTACCAGAATCAGCAAGAACCTGTGATGATGGCCTCTATAGAGCCATAGACTCCTA
. : . : . : . : . : . :
rJMSF022M24+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMSF046C04+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMFF004L13+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMSF040H14+ TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
rJMSF020J06+ TCATCCAACGCTCTCAGAACACGAGAGGANGAGGCTATGTCGAGTGATGGA
rJMSF010E01+ GCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
____________________________________________________________
consensus TCTTAAGGCTCATCCAACGCTCTCAGAACACGAGAGGAAGAGGCTATGTCGAGTGATGGA
. : . : . : . : . : . :
rJMSF022M24+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF046C04+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMFF004L13+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF040H14+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF020J06+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
rJMSF010E01+ TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
____________________________________________________________
consensus TTGCCAGAAGCTCTCGATTGATGCGTGCATGCACGCAGCTCAGAACGAGAGGCTTCCACT
. : . : . : . : . : . :
rJMSF022M24+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF046C04+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMFF004L13+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF040H14+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF020J06+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
rJMSF010E01+ CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
____________________________________________________________
consensus CAGAATTGTGGTGCAGGTGCTCTTCTCCGAGCAGGTGAAGATAAGTAACGCCATAGCCAA
. : . : . : . : . : . :
rJMSF022M24+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMSF046C04+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMFF004L13+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMSF040H14+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
rJMSF020J06+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTNTGCTGTCAAACCGCAAAAC
rJMSF010E01+ CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
____________________________________________________________
consensus CAGCTCCCTCAAGGATGCCGGGGACTCTCACTATCAGCCTCTGCTGTCAAACCGCAAAAC
. : . : . : . : . : . :
rJMSF022M24+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF046C04+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMFF004L13+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF040H14+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF020J06+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMSF010E01+ CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
rJMFF048G21+ ACAGCAGCCAAGAAGGATAT
____________________________________________________________
consensus CTTGCTCGAAGCAACGCCACAGTCTTTTCAGGAAGGGTGGACAGCAGCCAAGAAGGATAT
. : . : . : . : . : . :
rJMSF022M24+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF046C04+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMFF004L13+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF040H14+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF020J06+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMSF010E01+ CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
rJMFF048G21+ CAACACGCTCAAGTNTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
____________________________________________________________
consensus CAACACGCTCAAGTTTGAGCTAGAGAACGTCAAGGCCAAGTACGTTCAGCTCCAGAACGA
. : . : . : . : . : . :
rJMSF022M24+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF046C04+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMFF004L13+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF040H14+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF020J06+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMSF010E01+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
rJMFF048G21+ GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
____________________________________________________________
consensus GATGGATATCTTACAGAGGCAATTCGATAAGCTCACAAAACCAAAACAGGCCTCAGCCTG
. : . : . : . : . : . :
rJMSF022M24+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF046C04+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMFF004L13+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF040H14+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF020J06+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMSF010E01+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
rJMFF048G21+ GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
____________________________________________________________
consensus GACTTCAGGATGGAAAAAACTCAGCAAACTCACCAAGATGACACATCTAGACAACCATGA
. : . : . : . : . : . :
rJMSF022M24+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF046C04+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMFF004L13+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF040H14+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF020J06+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMSF010E01+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
rJMFF048G21+ TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
____________________________________________________________
consensus TTTGGGGTCTCAAGTTACAAACACAGAAAATACTCGAAAGACGCCTAGAAGGTGGAGAAA
. : . : . : . : . : . :
rJMSF022M24+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF046C04+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMFF004L13+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF040H14+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF020J06+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMSF010E01+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
rJMFF048G21+ TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
____________________________________________________________
consensus TTCCATTTCCTAAGTCCCCCCAGCCTTCCCAGTTTCGCCTACTGTTCTATTTTCTGTCCT
. : . : . : . : . : . :
rJMSF022M24+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAAC
rJMSF046C04+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAACCACCTGAGACCATAGCA
rJMFF004L13+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMSF040H14+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMSF020J06+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMSF010E01+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
rJMFF048G21+ ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
____________________________________________________________
consensus ATATTGCAGAAAGATTTCATTTTTTTCCCCGTTATAGAAAAA-CACCTGAGACCATAGCA
. : . : . : . : . : . :
rJMSF046C04+ TCAGTT
rJMFF004L13+ TCAGTTTATCATCAAT
rJMSF040H14+ TCAGTTTATCATCAATTTCATGTTCTTTATA
rJMSF020J06+ TCAGTTTATCATCAATTTCATGTTCTTTATA
rJMSF010E01+ TCAGTTTATCATCAATTTCATGTTCTTTATAC
rJMFF048G21+ TCAGTTTATCATCAATTTCATGTTCTTTATACAGTTGATTGATTGATCCATCTCCCTGTA
____________________________________________________________
consensus TCAGTTTATCATCAATTTCATGTTCTTTATACAGTTGATTGATTGATCCATCTCCCTGTA
. : . : . : . : . : . :
rJMFF048G21+ ATCACTACCTTCATAAATTCATATTTTTAGCTGCATCAACTGAAACCCATATTGTTATCA
____________________________________________________________
consensus ATCACTACCTTCATAAATTCATATTTTTAGCTGCATCAACTGAAACCCATATTGTTATCA
. : . : . : . : . : . :
rJMFF048G21+ GCATCAGAACCTATACAATTATGTTAGTCGTCGTAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus GCATCAGAACCTATACAATTATGTTAGTCGTCGTAAAAAAAAAAAAAAACTCTCCAGGGT