| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034O01 | Sequence | 515 | 013841 (12) | ref|XP_006357740.1| | 4e-35 | PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial-like [Solanum tuberos | |||||
| JMFF038L07 | Sequence | 557 | 013841 (12) | ref|XP_002531993.1| | 2e-28 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox | 529 | 013841 (12) | ref|XP_002531993.1| | 1e-28 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox |
| JMFF048G10 | Sequence | 414 | 013841 (12) | ref|XP_002531993.1| | 4e-29 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox | 303 | 013841 (12) | |||
| JMFN019D02 | Sequence | 632 | 013841 (12) | ref|XP_002531993.1| | 1e-27 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox | |||||
| JMFN034C21 | Sequence | 529 | 013841 (12) | ref|XP_002531993.1| | 1e-28 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox | |||||
| JMFS035C07 | Sequence | 518 | 013841 (12) | ref|XP_002531993.1| | 1e-28 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox | |||||
| JMSF021K07 | Sequence | 663 | 013841 (12) | ref|XP_002531993.1| | 5e-28 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox | 233 | 013841 (12) | |||
| JMSF030F07 | Sequence | 545 | 013841 (12) | ref|XP_002531993.1| | 1e-28 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox | 505 | 013841 (12) | ref|XP_002531993.1| | 7e-29 | cytochrome-c oxidase, putative [Ricinus communis] gb|EEF30392.1| cytochrome-c ox |
This contig is upended
. : . : . : . : . : . :
JMFF048G10- GAGAAAGAGTAGACCAAAA
JMFN034C21+ TGAGACCGTAGGAATTGAGAAAGAGTAGACCAAAA
JMFN019D02- AAA
JMFS035C07- GAGTAGACCAAAA
JMFF038L07- GAGAAAGAGTAGACCAAAA
JMSF030F07- GACCAAAA
rJMSF030F07+ GACCAAAA
rJMFF038L07+ GAGAAAGAGTAGACCAAAA
JMSF021K07- GAGAAAGAGTAGACCAAAA
____________________________________________________________
consensus TGAGACCGTAGGAATTGAGAAAGAGTAGACCAAAA
. : . : . : . : . : . :
JMFF048G10- TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
JMFN034C21+ TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
JMFN019D02- TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
JMFS035C07- TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
JMFF038L07- TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
JMSF030F07- TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
rJMSF030F07+ TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
rJMFF038L07+ TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
rJMFF034O01+ TTCTGCCCGTG
JMSF021K07- TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
____________________________________________________________
consensus TGGCGTCGGCGTTGATGAGATCCAGCTTACGCTCCGCCCTCCGCGGCGGTTCTGCCCGTG
. : . : . : . : . : . :
JMFF048G10- GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
JMFN034C21+ GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
JMFN019D02- GAGCTCCGGCTTCCAATAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
JMFS035C07- GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
JMFF038L07- GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
JMSF030F07- GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
rJMSF030F07+ GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
rJMFF038L07+ GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
rJMFF034O01+ GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCNTCCGCCCAGCACGATGAGGCCCAGGAAG
JMSF021K07- GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
____________________________________________________________
consensus GAGCTCCGGCTTCCAAGAGGAATTTCTCTTCCTCCGCCCAGCACGATGAGGCCCAGGAAG
. : . : . : . : . : . :
JMFF048G10- CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
JMFN034C21+ CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
JMFN019D02- CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
JMFS035C07- CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
JMFF038L07- CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
JMSF030F07- CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
rJMSF030F07+ CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
rJMFF038L07+ CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
rJMFF034O01+ CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATNG
JMSF021K07- CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
____________________________________________________________
consensus CAGCGAAATGGGAGAAAATCTCTTACGTGGCGATAGCTGCTTCCACTATCCTTGCTATTG
. : . : . : . : . : . :
JMFF048G10- TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
JMFN034C21+ TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
JMFN019D02- TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
JMFS035C07- TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
JMFF038L07- TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
JMSF030F07- TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
rJMSF030F07+ TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
rJMFF038L07+ TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
rJMFF034O01+ TTAATCTTTGTAAGGGTCACCCCCACCATGAAGAGCCTCNTGCGTATCCATACTTGCATA
JMSF021K07- TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
____________________________________________________________
consensus TTAATCTTTCTAAGGGTCACCCCCACCATGAAGAGCCTCCTGCGTATCCATACTTGCATA
. : . : . : . : . : . :
JMFF048G10- TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
JMFN034C21+ TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
JMFN019D02- TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
JMFS035C07- TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
JMFF038L07- TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
JMSF030F07- TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
rJMSF030F07+ TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
rJMFF038L07+ TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
rJMFF034O01+ TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
JMSF021K07- TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
____________________________________________________________
consensus TTCGTAACAAGGAGTTTCCATGGGGTCCAGATGGTCTTTTCGAGAGTAAGCATCATTAAT
. : . : . : . : . : . :
JMFF048G10- CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
JMFN034C21+ CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
rJMSF021K07+ ACTGCAGCAATAAATGTCTGGTTCGCANGTCTG
JMFN019D02- CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
JMFS035C07- CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
JMFF038L07- CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
JMSF030F07- CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
rJMSF030F07+ CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
rJMFF038L07+ CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
rJMFF034O01+ CTACAGTCATCTATCATCTCTGTGANTACTGCAGCAATAAATGNTTGGTTNGCANGTCTG
JMSF021K07- CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
rJMFF048G10+ CTG
____________________________________________________________
consensus CTACAGTCATCTATCATCTCTGTGACTACTGCAGCAATAAATGTTTGGTTCGCATGTCTG
. : . : . : . : . : . :
JMFF048G10- CTTTATCAGAGGCCTGAGGCTTCAAA
JMFN034C21+ CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
rJMSF021K07+ CNTTATCAGAGGCCNGNGGCTTCAAANCTGNTTGAGAGATTTATTCCGTCNCANATGTAC
JMFN019D02- CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
JMFS035C07- CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
JMFF038L07- CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
JMSF030F07- CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
rJMSF030F07+ CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
rJMFF038L07+ CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
rJMFF034O01+ CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
JMSF021K07- CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
rJMFF048G10+ CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
____________________________________________________________
consensus CTTTATCAGAGGCCTGAGGCTTCAAAACTGTTTGAGAGATTTATTCCGTCACATATCTAC
. : . : . : . : . : . :
JMFN034C21+ TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
rJMSF021K07+ TNTGTNTCATANACTTNGCNTATATTGGGAATAAGNANGTAACACTAGTNTGAACATATC
JMFN019D02- TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
JMFS035C07- TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
JMFF038L07- TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
JMSF030F07- TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
rJMSF030F07+ TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTT-GAACATATC
rJMFF038L07+ TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
rJMFF034O01+ TTTGTNTCATATACTTTGCCTATATTGGGAATAAGTATGTAACANTAGTTNGAACATATC
JMSF021K07- TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
rJMFF048G10+ TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAGCACTAGTTTGAACATATC
____________________________________________________________
consensus TTTGTTTCATATACTTTGCCTATATTGGGAATAAGTATGTAACACTAGTTTGAACATATC
. : . : . : . : . : . :
JMFN034C21+ ATTTCATAAAGTTG
rJMSF021K07+ ATTTCATAAAGTTGCTNTANGTTTCAAANGCGTGANATATNTGAGAAAGTGANTGCGTAT
JMFN019D02- ATTTCATAAAGTTGCTTTATGTTTCAAAGGTGTGATATATTTGAGAAAGTGATTGCGTAT
JMFS035C07- ATTTCATAAAGTTGCTTTATGTTTC
JMFF038L07- ATTTCATAAAGTTGCTTTATGTTTCAAAGGTGTGATATATTTGGGAAA
JMSF030F07- ATTTCATAAAGTTGCTTTATGTTTCAAAGGTGTGATATATTTGAGAAA
rJMSF030F07+ ATTTCATAAAGT
rJMFF038L07+ ATTTCATAAAGTTGCTTTA
rJMFF034O01+ ATTTCATAAAGTTGCTTTATGTTTCAAAGGTGTGATATA-TCGAGAAAGCGATTGCGTAT
JMSF021K07- ATTTCATAAAGTTGCTTTATGTTTCAAAGGTGTGATATATTTGAGAAAGTGATTGCGTAT
rJMFF048G10+ ATTTCATAAAGTTGCTTTATGTTTCAAAGGTGTGATATATTTGAGAAAGTGATTGCGTAT
____________________________________________________________
consensus ATTTCATAAAGTTGCTTTATGTTTCAAAGGTGTGATATATTTGAGAAAGTGATTGCGTAT
. : . : . : . : . : . :
rJMSF021K07+ TTAGTGTCATGTAGAAGAAT
JMFN019D02- TTAGTGTCATGTAGAAGAATTACTCTTTACTTGAAGTAACAGTTTTATCATGAATATTTA
rJMFF034O01+ TTAGTGTCATGTAGAAGAATTACTC
JMSF021K07- TTAGTGTCATGTAGAAGAATTACTCTTTACTTGAAGTAACAGTTTTATCATGAATATTTA
rJMFF048G10+ TTAGTGTCATGTAGAAGAATTACTCTTTACTTGAAGTAACAGTTTTATCATGAATATTTA
____________________________________________________________
consensus TTAGTGTCATGTAGAAGAATTACTCTTTACTTGAAGTAACAGTTTTATCATGAATATTTA
. : . : . : . : . : . :
JMFN019D02- ACAGTCAAATCAATGACATTTTAAGTCCA
JMSF021K07- ACAGTCAAATCAATGACATTTTAAGTCCA
rJMFF048G10+ ACAGTCAAATCAATGACATTTTAAGTCCATTTCCAAAAAAAAAAAAAAAACTCTCCAGGG
____________________________________________________________
consensus ACAGTCAAATCAATGACATTTTAAGTCCATTTCCAAAAAAAAAAAAAAAACTCTCCAGGG