Contig 013838:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047H09Sequence626010685 (5)ref|XP_007014241.1|180Transducin/WD40 repeat-like superfamily protein [Theobroma cacao] gb|EOY31860.1|574013838 (2)ref|XP_009764170.1|1e-14PREDICTED: WD repeat-containing protein 75 [Nicotiana sylvestris]
JMSF022A07Sequence624010685 (5)gb|KCW80988.1|3e-46hypothetical protein EUGRSUZ_C02353 [Eucalyptus grandis]770013838 (2)ref|XP_011095677.1|4e-44PREDICTED: WD repeat-containing protein 75 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022A07+ TCAGCTAGGTCCAAGGCATCT
                      ____________________________________________________________
consensus TCAGCTAGGTCCAAGGCATCT
 
. : . : . : . : . : . :
rJMSF022A07+ AATGAAGCTTCATTGAATAGTGTGGATGGGGTAATTTTATTGTATAATGTAGAAACTCCT
                      ____________________________________________________________
consensus AATGAAGCTTCATTGAATAGTGTGGATGGGGTAATTTTATTGTATAATGTAGAAACTCCT
 
. : . : . : . : . : . :
rJMSF022A07+ GTTCCTTTGGCTACCTGGCTTGTGAAGAAGGCTCAAGGTGGAGGGATTGGTTTCATTCTT
                      ____________________________________________________________
consensus GTTCCTTTGGCTACCTGGCTTGTGAAGAAGGCTCAAGGTGGAGGGATTGGTTTCATTCTT
 
. : . : . : . : . : . :
rJMSF022A07+ CGAAGTGATAAATCAGAAGAGGATCTTACAGATGGAAAACAATTGCAGATGCTATGCTAT
                      ____________________________________________________________
consensus CGAAGTGATAAATCAGAAGAGGATCTTACAGATGGAAAACAATTGCAGATGCTATGCTAT
 
. : . : . : . : . : . :
rJMSF022A07+ ATAAATAGTGATCATGAGTATGTTCTCTTTGACCCATATAGTCAGCAACTTCATGATCAG
                      ____________________________________________________________
consensus ATAAATAGTGATCATGAGTATGTTCTCTTTGACCCATATAGTCAGCAACTTCATGATCAG
 
. : . : . : . : . : . :
rJMSF022A07+ ACAATTATACAGAGACATAAATTTCTTCAATCTGATGAGACAGGGAGGTCTGGGTATGCA
rJMFF047H09+ TCAATCTGATGAGACAGGGGGGTCTGGGTATGCA
                      ____________________________________________________________
consensus ACAATTATACAGAGACATAAATTTCTTCAATCTGATGAGACAGGGGGGTCTGGGTATGCA
 
. : . : . : . : . : . :
rJMSF022A07+ TCTATGTATGGGGAACTACCAGAGTTTCACCAAAACCGAAATCAAACTTCATCTGTCGTC
rJMFF047H09+ TCTATGTATGGGGAACTACCAGAGTTTCACCAAAACCGAAATCAAACTTCATCTGTCGTC
                      ____________________________________________________________
consensus TCTATGTATGGGGAACTACCAGAGTTTCACCAAAACCGAAATCAAACTTCATCTGTCGTC
 
. : . : . : . : . : . :
rJMSF022A07+ ACATCTGTACCGTCAGAAAAGCCATGGGAAACCCTATGCAGCGGCCCGTCTTATGCTCTT
rJMFF047H09+ ACATCTGTACCGTCAGAAAAGCCATGGGAAACCCTATGCAGCGGCCCGTCTTATGCTCTT
                      ____________________________________________________________
consensus ACATCTGTACCGTCAGAAAAGCCATGGGAAACCCTATGCAGCGGCCCGTCTTATGCTCTT
 
. : . : . : . : . : . :
rJMSF022A07+ CCTCTTTCTGAATTGTGTTCAAAATTTCTTGAAACATTTCTGGAGAAGAGGATGATACCT
rJMFF047H09+ CCTCTTTCTGAATTGTGTTCAAAATTTCTTGAAACATTTTTGGAGAAGAGGATGATACCT
                      ____________________________________________________________
consensus CCTCTTTCTGAATTGTGTTCAAAATTTCTTGAAACATTTTTGGAGAAGAGGATGATACCT
 
. : . : . : . : . : . :
rJMSF022A07+ GTGGAGTGAATCTCTTGCCTGTTATTTTGTCATGAGTTGCAATGCCAATCTCTTCTGCAA
rJMFF047H09+ GTGGAGTGAATCTCTTGCCTGTTATTTTGTCATGAGTTGCAATGCCAATTTTTTTTGCAA
                      ____________________________________________________________
consensus GTGGAGTGAATCTCTTGCCTGTTATTTTGTCATGAGTTGCAATGCCAATTTTTTTTGCAA
 
. : . : . : . : . : . :
rJMSF022A07+ TTACTTTATCACAACAATGGTGCAAAGGAGGAGCAGCAACATGTATTTGAGGTATGTGAA
rJMFF047H09+ TTACTTTATCACAACAATGGTGCAAAGGAGGAGCAGCAACATGTATTTGAGGTATGTGAA
                      ____________________________________________________________
consensus TTACTTTATCACAACAATGGTGCAAAGGAGGAGCAGCAACATGTATTTGAGGTATGTGAA
 
. : . : . : . : . : . :
rJMSF022A07+ GCAGTTTTGCTGCTGAAGATGTGAGCATGGGTCGGCAAAACCTAGCATTGTATTTGCTTT
rJMFF047H09+ GCAGTTTTGCTGCTGAAGATGTGAGCATGGGTCGGCAAAACCTAGCATTGTATTTGCTTT
                      ____________________________________________________________
consensus GCAGTTTTGCTGCTGAAGATGTGAGCATGGGTCGGCAAAACCTAGCATTGTATTTGCTTT
 
. : . : . : . : . : . :
rJMSF022A07+ AATCTTCCGACTTTATGGAAGCAAATTTTGTAATCCCTAAGAACCAGCAAAATCGTTTCA
rJMFF047H09+ AATCTTCCGACTTTATGGAAGCAAATTTTGTAATCCCTAAGAACCAGCAAAATCGTTTCA
                      ____________________________________________________________
consensus AATCTTCCGACTTTATGGAAGCAAATTTTGTAATCCCTAAGAACCAGCAAAATCGTTTCA
 
. : . : . : . : . : . :
rJMSF022A07+ CCTTTACAAAATGGGAAATTTTGTCAAT
rJMFF047H09+ CCTTTACAAAATGGGAAATTTTGTCAATTTACAAACTGATTTTTAACTTTCACACTATTA
                      ____________________________________________________________
consensus CCTTTACAAAATGGGAAATTTTGTCAATTTACAAACTGATTTTTAACTTTCACACTATTA
 
. : . : . : . : . : . :
rJMFF047H09+ TTAGATTTGATTTCAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGT
                      ____________________________________________________________
consensus TTAGATTTGATTTCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGT