| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF047A22 | Sequence | 411 | 002098 (8) | ref|XP_004294039.1| | 3e-64 | PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves | 250 | 013836 (7) | |||
| JMSF007M05 | Sequence | 388 | 002098 (8) | emb|CDP06988.1| | 2e-48 | unnamed protein product [Coffea canephora] | 710 | 013836 (7) | |||
| JMSF015O24 | Sequence | 259 | 002098 (8) | emb|CDP15354.1| | 2e-38 | unnamed protein product [Coffea canephora] | 708 | 013836 (7) | |||
| JMSF023E18 | Sequence | 667 | 016775 | emb|CDP06988.1| | 5e-117 | unnamed protein product [Coffea canephora] | 779 | 013836 (7) | |||
| JMSF025B21 | Sequence | 638 | 002098 (8) | emb|CDP06988.1| | 7e-117 | unnamed protein product [Coffea canephora] | 796 | 013836 (7) | |||
| JMSF030C05 | Sequence | 653 | 002098 (8) | ref|XP_004294039.1| | 9e-78 | PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves | 670 | 013836 (7) | |||
| JMSF036I09 | Sequence | 621 | 022182 | emb|CDP06988.1| | 6e-104 | unnamed protein product [Coffea canephora] | 700 | 013836 (7) | |||
This contig is upended
. : . : . : . : . : . :
rJMSF023E18+ ACATAATTCAAGATTTGTGACATGGTNAACATCATTGGAGAATGCTATAGCCTTTGCA
rJMSF025B21+ GCTATAGCCTTTGCA
____________________________________________________________
consensus ACATAATTCAAGATTTGTGACATGGTNAACATCATTGGAGAATGCTATAGCCTTTGCA
. : . : . : . : . : . :
rJMSF023E18+ GATTATGGATCTCTGTTTACATTCACTCACCTTTGAGTTCATCTTGCAAATAGGTCATCC
rJMSF025B21+ GATTATGGATCTCTGTTTACATTCACTCACCTTTGAGTTCATCTTGCAAATAGGTCATCC
____________________________________________________________
consensus GATTATGGATCTCTGTTTACATTCACTCACCTTTGAGTTCATCTTGCAAATAGGTCATCC
. : . : . : . : . : . :
rJMSF023E18+ CAATATCCCTTTTCACCAAAACTAAAATATGTGGTCCTTGTTTTTTATCCCTTCCATCAT
rJMSF015O24+ TTCACCAAAACTAAAATATGTGGTCCTTGTTTTTTATCCCTTCCATCAT
rJMSF036I09+ TTTCACCAAAACTAAAATATGTGGTCCTTGTTTTTTATCCCTTCCATCAT
rJMSF025B21+ CAATATCCCTTTTCACCAAAACTAAAATATGTGGTCCTTGTTTTTTATCCCTTCCATCAT
rJMSF030C05+ TTCCATCAT
rJMSF007M05+ CACCAAAACTAAAATATGTGGTCCTTGTTTTTTATCCCTTCCATCAT
____________________________________________________________
consensus CAATATCCCTTTTCACCAAAACTAAAATATGTGGTCCTTGTTTTTTATCCCTTCCATCAT
. : . : . : . : . : . :
rJMSF023E18+ TTTCGTTGCTTTCTTGTGCCCTTCATATCATCTTGTAAACATGAATACCAAATCACCCTT
rJMSF015O24+ TTTCGTTGCTTTCTTGTGCCCTTCATATCATCTTGTAAACATGAATACCAAATCACCCTT
rJMSF036I09+ TTTCGTTGCTTTCTTGTGCCCTTCATATCATCTTGTAAACATGAATACCAAATCACCCTT
rJMSF025B21+ TTTCGTTGCTTTCTTGTGCCCTTCATATCATCTTGTAAACATGAATACCAAATCACCCTT
rJMSF030C05+ TTTCGTTGCTTTCTTGTGCCCTTCATATCATCTTGTAAACATGAATACCAAATCACCCTT
rJMSF007M05+ TTTCGTTGCTTTCTTGTGCCCTTCATATCATCTTGTAAACATGAATACCAAATCACCCTT
____________________________________________________________
consensus TTTCGTTGCTTTCTTGTGCCCTTCATATCATCTTGTAAACATGAATACCAAATCACCCTT
. : . : . : . : . : . :
rJMSF023E18+ TCCTCTTTTTAAACAAAAGTTAAAATTAGTTTGCCTCCTCCATTGTTCCTTGTTTTGTAA
rJMSF015O24+ TCCTCTTTTTAAACAAAAGTTAAAATTAGTTTGCCTCCTCCATTGTTCCTTGTTTTGTAA
rJMSF036I09+ TCCTCTTTTTAAACAAAAGTTAAAATTAGTTTGCCTCCTCCATTGTTCCTTGTTTTGTAA
rJMSF025B21+ TCCTCTTTTTAAACAAAAGTTAAAATTAGTTTGCCTCCTCCATTGTTCCTTGTTTTGTAA
rJMSF030C05+ TCCTCTTTTTAAACAAAAGTTAAAATTAGTTTGCCTCCTCCATTGTTCCTTGTTTTGTAA
rJMSF007M05+ TCCTCTTTTTAAACAAAAGTTAAAATTAGTTTGCCTCCTCCATTGTTCCTTGTTTTGTAA
____________________________________________________________
consensus TCCTCTTTTTAAACAAAAGTTAAAATTAGTTTGCCTCCTCCATTGTTCCTTGTTTTGTAA
. : . : . : . : . : . :
rJMSF023E18+ TTGCTTTTTGTGCAGCTATAGGACATCATACTTATAAACATGAATCCCAAATCGCTTCCC
rJMSF015O24+ TTGCTTTTTGTGCAGCTATAGGACATCATACTTATAAACATGAATCCCAAATCGCTTCCC
rJMSF036I09+ TTGCTTTTTGTGCAGCTATAGGACATCATACTTATAAACATGAATCCCAAATCGCTTCCC
rJMSF025B21+ TTGCTTTTTGTGCAGCTATAGGACATCATACTTATAAACATGAATCCCAAATCGCTTCCC
rJMSF030C05+ TTGCTTTTTGTGCAGCTATAGGACATCATACTTATAAACATGAATCCCAAATCGCTTCCC
rJMSF007M05+ TTGCTTTTTGTGCAGCTATAGGACATCATACTTATAAACATGAATCCCAAATCGCTTCCC
____________________________________________________________
consensus TTGCTTTTTGTGCAGCTATAGGACATCATACTTATAAACATGAATCCCAAATCGCTTCCC
. : . : . : . : . : . :
rJMSF023E18+ TCTTTTCTAAACAAGACATTAAGGTTGCCTCCATTATTGTTCCTTGTTTTTTATTTGCTT
rJMSF015O24+ TCTTTTCTAAACAAGACATTAAGGTTGCCTCCATTATTGTTCCTTGTTTTTTATTTGCTT
rJMSF036I09+ TCTTTTCTAAACAAGACATTAAGGTTGCCTCCATTATTGTTCCTTGTTTTTTATTTGCTT
rJMSF025B21+ TCTTTTCTAAACAAGACATTAAGGTTGCCTCCATTATTGTTCCTTGTTTTTTATTTGCTT
rJMSF030C05+ TCTTTTCTAAACAAGACATTAAGGTTGCCTCCATTATTGTTCCTTGTTTTTTATTTGCTT
rJMSF007M05+ TCTTTTCTAAACAAGACATTAAGGTTGCCTCCATTATTGTTCCTTGTTTTTTATTTGCTT
____________________________________________________________
consensus TCTTTTCTAAACAAGACATTAAGGTTGCCTCCATTATTGTTCCTTGTTTTTTATTTGCTT
. : . : . : . : . : . :
rJMSF023E18+ TTTGCGCAGTCAGGTTGTCCTGTGAGCAACACCATCCAGGCTAGTAGATATTCTACTTCT
rJMSF015O24+ TTTGCGCAGTCAGGTTGTCCTGTGAGCAACACCATCCAGGCTAGTAGATATTCTACTTCT
rJMSF036I09+ TTTGCGCAGTCAGGTTGTCCTGTGAGCAACACCATCCAGGCTAGTAGATATTCTACTTCT
rJMSF025B21+ TTTGCGCAGTCAGGTTGTCCTGTGAGCAACACCATCCAGGCTAGTAGATATTCTACTTCT
rJMSF030C05+ TTTGCGCAGTCAGGTTGTCCTGTGAGCAACACCATCCAGGCTAGTAGATATTCTACTTCT
rJMSF007M05+ TTTGCGCAGTCAGGTTGTCCTGTGAGCAACACCATCCAGGCTAGTAGATATTCTACTTCT
____________________________________________________________
consensus TTTGCGCAGTCAGGTTGTCCTGTGAGCAACACCATCCAGGCTAGTAGATATTCTACTTCT
. : . : . : . : . : . :
rJMSF023E18+ CTCATTTAAATATCCTATCAGGAACTTGTCTGTCTTACATTTACCACAAGTTTTGCAGGA
rJMSF015O24+ CTCATTTAAATATCCTATCAGGAACTTGTCTGTCTTACATTTACCACAAGTTTTGCAGGA
rJMSF036I09+ CTCATTTAAATATCCTATCAGGAACTTGTCTGTCTTACATTTACCACAAGTTTTGCAGGA
rJMSF025B21+ CTCATTTAAATATCCTATCAGGAACTTGTCTGTCTTACATTTACCACAAGTTTTGCAGGA
rJMSF030C05+ CTCATTTAAATATCCTATCAGGAACTTGTCTGTCTTACATTTACCACAAGTTTTGCAGGA
rJMSF007M05+ CTCATTTAAATATCCTATCAGGAACTTGTCTGTCTTACATTTACCACAAGTTTTGCAGGA
____________________________________________________________
consensus CTCATTTAAATATCCTATCAGGAACTTGTCTGTCTTACATTTACCACAAGTTTTGCAGGA
. : . : . : . : . : . :
rJMSF023E18+ AACAGGTCCAGGTTTCCATGCAGATAATGACCAGTCATCATCATATTTTAATAACAGCTT
rJMSF015O24+ AACAGGTCCAGGTTTCCATGCAGATAATGACCAGTCATCATCATATTTTAATAACAGCTT
rJMSF036I09+ AACAGGTCCAGGTTTCCATGCAGATAATGACCAGTCATCATCATATTTTAATAACAGCTT
rJMSF025B21+ AACAGGTCCAGGTTTCCATGCAGATAATGACCAGTCATCATCATATTTTAATAACAGCTT
rJMSF030C05+ AACAGGTCCAGGTTTCCATGCAGATAATGACCAGTCATCATCATATTTTAATAACAGCTT
rJMSF007M05+ AACAGGTCCAGGTTTCCATGCAGATAATGACCAGTCATCATCATATTTTAATAACAGCTT
____________________________________________________________
consensus AACAGGTCCAGGTTTCCATGCAGATAATGACCAGTCATCATCATATTTTAATAACAGCTT
. : . : . : . : . : . :
rJMSF023E18+ GCCATGAAATTTGTAACAGGTCGTCGAAGATACAAGGCAGTCGATGCTCTTTGGTGTCAG
rJMSF015O24+ GCCATGAAATTTGTAACAGGTCGTCGAAGATACAAGGCAGTCGATGCTCTTTGGTGTCAG
rJMSF036I09+ GCCATGAAATTTGTAACAGGTCGTCGAAGATACAAGGCAGTCGATGCTCTTTGGTGTCAG
rJMSF025B21+ GCCATGAAATTTGTAACAGGTCGTCGAAGATACAAGGCAGTCGATGCTCTTTGGTGTCAG
rJMSF030C05+ GCCATGAAATTTGTAACAGGTCGTCGAAGATACAAGGCAGTCGATGCTCTTTGGTGTCAG
rJMSF007M05+ GCCATGAAATTTGTAACAGGTCGTCGAAGATACAAGGCAGTCGATGCTCTTTGGTGTCAG
rJMFF047A22+ TTGGTGTCAG
____________________________________________________________
consensus GCCATGAAATTTGTAACAGGTCGTCGAAGATACAAGGCAGTCGATGCTCTTTGGTGTCAG
. : . : . : . : . : . :
rJMSF023E18+ GAATTTGTATTAAAAGGATCGGTTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
rJMSF015O24+ GAATTTGTATTAAAAGGATCGGTTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
rJMSF036I09+ GAATTTGTATTAAAAGGATCGGTTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
rJMSF025B21+ GAATTTGTATTAAAAGGATCGGTTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
rJMSF030C05+ GAATTTGTATTAAAAGGATCGGTTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
rJMSF007M05+ GAATTTGTATTAAAAGGATCGGTTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
rJMFF047A22+ GAATTTGTATTAAAAGGATCGGGTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
____________________________________________________________
consensus GAATTTGTATTAAAAGGATCGGTTGAGGAGCCTTTGTGGAATTTTAGTATTGTGCATCCA
. : . : . : . : . : . :
rJMSF023E18+ TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
rJMSF015O24+ TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
rJMSF036I09+ TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
rJMSF025B21+ TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
rJMSF030C05+ TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
rJMSF007M05+ TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
rJMFF047A22+ TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
____________________________________________________________
consensus TCTTTAGGTGATGTGGGTTAGACTGTCCAGTGTGGATTGTACACATATGGGATGAGCAAC
. : . : . : . : . : . :
rJMSF023E18+ T
rJMSF015O24+ TTCACTTAAAAATGACCAAGGGTGTTTCTATGCTTTATTTATGATGTATGGAAATGACC
rJMSF036I09+ TTCACTTAAAAATGACC
rJMSF025B21+ TTCACTTAAAAATGACCAAGGGTGTTTCTATGCTTTATTTATGATGTATGGAAATGACCA
rJMSF030C05+ TTCACTTAAAAATGACCAAGGGTGTTTCTATGCTTTATTTATGATGTATGGAAATGACCA
rJMSF007M05+ TTCACTTAAAAATGACCAAGGGTGTTTCTATGCTTTATTTATGATGTATGGAAATGACCA
rJMFF047A22+ TTCACTTAAAAATGACCAAGGGTGTTTTTATGCTTTATTTATGATGTATGGAAATGACCA
____________________________________________________________
consensus TTCACTTAAAAATGACCAAGGGTGTTTCTATGCTTTATTTATGATGTATGGAAATGACCA
. : . : . : . : . : . :
rJMSF025B21+ T
rJMSF030C05+ T
rJMSF007M05+ T
rJMFF047A22+ TTTTTTGTCTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAAAAAAAAAAAAAC
____________________________________________________________
consensus TTTTTTGTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAAAAAAAC