Contig 013835:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036B03Sequence543013835 (4)ref|XP_009783880.1|2e-57PREDICTED: replication protein A 32 kDa subunit A-like [Nicotiana sylvestris]713013835 (4)ref|XP_009606523.1|6e-64PREDICTED: replication protein A 32 kDa subunit A-like [Nicotiana tomentosiform
JMFF047A07Sequence503013835 (4)ref|XP_006361577.1|2e-46PREDICTED: replication protein A 32 kDa subunit A-like [Solanum tuberosum]481013835 (4)ref|XP_009770105.1|7e-32PREDICTED: replication protein A 32 kDa subunit B-like isoform X2 [Nicotiana sy

Alignment

This contig is upended


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JMFF047A07- AGCGAGAAAATAGGGCTATAACAATT
                      ____________________________________________________________
consensus AGCGAGAAAATAGGGCTATAACAATT
 
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JMFF047A07- ACAAAAGGCGGGAAATTCTAACTTTCGCGCGCTATTTGATTTTATTCCTCCACCCGCCTT
                      ____________________________________________________________
consensus ACAAAAGGCGGGAAATTCTAACTTTCGCGCGCTATTTGATTTTATTCCTCCACCCGCCTT
 
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JMFF047A07- TCATATTTGACCTAACAGCCGATTTATTCAATCACAGTCATCTTTTTGATCACCCGAAAT
JMFF036B03- GAAAT
                      ____________________________________________________________
consensus TCATATTTGACCTAACAGCCGATTTATTCAATCACAGTCATCTTTTTGATCACCCGAAAT
 
. : . : . : . : . : . :
JMFF047A07- TTGGAGCTAAAGAAAATAGAACGGAAAATGTTCGGAAACAGCAGCCAATTCGACTCCGTC
JMFF036B03- TTGGAGCTAAAGAAAATAGAACGGAAAATGTTCGGAAACAGCAGCCAATTCGACTCCGTC
                      ____________________________________________________________
consensus TTGGAGCTAAAGAAAATAGAACGGAAAATGTTCGGAAACAGCAGCCAATTCGACTCCGTC
 
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JMFF047A07- GCCGCCTTCTCCGGCGGCGGCTTTGTCCCATCTCAGTCCACTCAAGGCCCAGACGCATCC
JMFF036B03- GCCGCCTTCTCCGGCGGCGGCTTTGTCCCATCTCAGTCCACTCAAGGCCCAGACGCATCC
                      ____________________________________________________________
consensus GCCGCCTTCTCCGGCGGCGGCTTTGTCCCATCTCAGTCCACTCAAGGCCCAGACGCATCC
 
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JMFF047A07- CATTCATCGGCCAAGAGTCGCGACCAGACGCCTCTGCTTCCACTAACAATGAAGCAGATA
JMFF036B03- CATTCATCGGCCAAGAGTCGCGACCAGACGCCTCTGCTTCCACTAACAATGAAGCAGATA
                      ____________________________________________________________
consensus CATTCATCGGCCAAGAGTCGCGACCAGACGCCTCTGCTTCCACTAACAATGAAGCAGATA
 
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JMFF047A07- AGCCAAGCACTTCAATCGAGCAACGATNAGTCTAGTTTCCTGATTGACGGCATTGATGTC
JMFF036B03- AGCCAAGCAGTTCAATCGAGCAACGATAAGTCTAGTTTCCTGATTGACGGCATTGATGTC
                      ____________________________________________________________
consensus AGCCAAGCAGTTCAATCGAGCAACGATAAGTCTAGTTTCCTGATTGACGGCATTGATGTC
 
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JMFF047A07- AGCAATGTGAGAGTGGTGGGGATGGCATTNCAGAAAGCTGAGAGGGTCACTGATGTAACA
JMFF036B03- AGCAATGTGAGAGTGGTGGGGATGGCATTCAAGAAAGCTGAGAGGGTCACTGATGTAACA
                      ____________________________________________________________
consensus AGCAATGTGAGAGTGGTGGGGATGGCATTCCAGAAAGCTGAGAGGGTCACTGATGTAACA
 
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JMFF047A07- TTTGTGATTGATGATGGCACCGGTCGCATCGAATGCAATCGATGGCTGAATGATGCT
JMFF036B03- TTTGTGATTGATGATGGCACCGGTCGCATCGAATGCAATCGATGGCTGAATGATGCTGTT
                      ____________________________________________________________
consensus TTTGTGATTGATGATGGCACCGGTCGCATCGAATGCAATCGATGGCTGAATGATGCTGTT
 
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JMFF036B03- GACAACAATGAAGTAGGGGGAGTATTGGATGGGATGGTATGTTGTTGTTCATGGGCACTT
rJMFF036B03+ GGATGGGAT-GTATGTTGTTGTTCATGGGCACTT
                      ____________________________________________________________
consensus GACAACAATGAAGTAGGGGGAGTATTGGATGGGATGGTATGTTGTTGTTCATGGGCACTT
 
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JMFF036B03- GAAAAGCTTTCAGGGTAAAATGCAGATAAT
rJMFF036B03+ GAAAAGCTTTCAGGGTAAAATGCAGATAATGAGCTTTGCTAAGGCCTGTGACTGACTATA
                      ____________________________________________________________
consensus GAAAAGCTTTCAGGGTAAAATGCAGATAATGAGCTTTGCTAAGGCCTGTGACTGACTATA
 
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rJMFF036B03+ ATATGATTGCAAACCACTTTCTTGAATGTATTTATGTCCATCAGTGCAATGCGAAGCCAA
                      ____________________________________________________________
consensus ATATGATTGCAAACCACTTTCTTGAATGTATTTATGTCCATCAGTGCAATGCGAAGCCAA
 
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rJMFF036B03+ AGATACAAAGTAGCCTTTCTACCCAGAATCCATCTGAAGGACAGTCCCAGGTCAACACTC
rJMFF047A07+ C
                      ____________________________________________________________
consensus AGATACAAAGTAGCCTTTCTACCCAGAATCCATCTGAAGGACAGTCCCAGGTCAACACTC
 
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rJMFF036B03+ AATCAAATGGATATAATTCTACCTCCACAGTTCAACTCTCTGGACAGAATTGTATGGATG
rJMFF047A07+ AATCAAANGGATATAATTCTACCTCCACAGTTCAACTCTCTGGACAGAATNGTATGGATG
                      ____________________________________________________________
consensus AATCAAATGGATATAATTCTACCTCCACAGTTCAACTCTCTGGACAGAATTGTATGGATG
 
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rJMFF036B03+ GGCTCAAGGGAATTGAAAAAATGGTGATGGATTATTTGCATCAGCCTTCATCAATTGCGC
rJMFF047A07+ GGCTCAAGGGAATTGAAAAAATGATGATGGATTATTTGCATCAGCCTTCATCAATTGCGC
                      ____________________________________________________________
consensus GGCTCAAGGGAATTGAAAAAATGGTGATGGATTATTTGCATCAGCCTTCATCAATTGCGC
 
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rJMFF036B03+ AGGAAAAGGGAATACACAGGAATGAGATCGCTCAACAGCTTAAAGTTCCATCGGAGAAGA
rJMFF047A07+ AGGAAAAGGGAATACACAGGAATGAGATCGCTCAACAGCTTAAAGTTCCATCGGAGAAGA
                      ____________________________________________________________
consensus AGGAAAAGGGAATACACAGGAATGAGATCGCTCAACAGCTTAAAGTTCCATCGGAGAAGA
 
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rJMFF036B03+ TCTTGGAAGCAATTGAGTCACTTGAAACAGAAGGTCTGGTTTACTCTACCATTGACGAGT
rJMFF047A07+ TCTTGGAAGCAATTGAGTCACTTGAAACAGAAGGTCTGGTTTACTCTACCATTGACGAGT
                      ____________________________________________________________
consensus TCTTGGAAGCAATTGAGTCACTTGAAACAGAAGGTCTGGTTTACTCTACCATTGACGAGT
 
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rJMFF036B03+ GCCACTATAAGTCTACTAGTGCTTGAAGCTCAATATCAGCATATATATTGGATAGCCAAG
rJMFF047A07+ GCCACTATAAGTCTACTAGTGCTTGAAGCTCAATATCAGCATATATATNGGATAGCCAAG
                      ____________________________________________________________
consensus GCCACTATAAGTCTACTAGTGCTTGAAGCTCAATATCAGCATATATATTGGATAGCCAAG
 
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rJMFF036B03+ TTTGTTAGTATGGAGTGGCAGAACTAGTGTAATGTTACTAGGTTAATCCTATTCCCCATT
rJMFF047A07+ TTTGTTAGTATGGAGTGGCAGAACTAGTGTAATGTTACTAGGTTAATCCTATTCCCCATT
                      ____________________________________________________________
consensus TTTGTTAGTATGGAGTGGCAGAACTAGTGTAATGTTACTAGGTTAATCCTATTCCCCATT
 
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rJMFF036B03+ TTATGTTGATGACAGAAGTGAATTTGCTTTACTACATATA
rJMFF047A07+ TTATGTTGATGACAGAAGTGAATTTGCTTTACTACATATATGTTAAACAAAGTTTAGAGT
                      ____________________________________________________________
consensus TTATGTTGATGACAGAAGTGAATTTGCTTTACTACATATATGTTAAACAAAGTTTAGAGT
 
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rJMFF047A07+ GATATCTAATTTTATTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus GATATCTAATTTTATTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG