Contig 013835:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036B03Sequence543013835 (4)ref|XP_009783880.1|2e-57PREDICTED: replication protein A 32 kDa subunit A-like [Nicotiana sylvestris]713013835 (4)ref|XP_009606523.1|6e-64PREDICTED: replication protein A 32 kDa subunit A-like [Nicotiana tomentosiform
JMFF047A07Sequence503013835 (4)ref|XP_006361577.1|2e-46PREDICTED: replication protein A 32 kDa subunit A-like [Solanum tuberosum]481013835 (4)ref|XP_009770105.1|7e-32PREDICTED: replication protein A 32 kDa subunit B-like isoform X2 [Nicotiana sy

Alignment

This contig is upended


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JMFF047A07-                                             AGCGAGAAAATAGGGCTATAACAATT
                      ____________________________________________________________
consensus                                               AGCGAGAAAATAGGGCTATAACAATT
 
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JMFF047A07-           ACAAAAGGCGGGAAATTCTAACTTTCGCGCGCTATTTGATTTTATTCCTCCACCCGCCTT
                      ____________________________________________________________
consensus             ACAAAAGGCGGGAAATTCTAACTTTCGCGCGCTATTTGATTTTATTCCTCCACCCGCCTT
 
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JMFF047A07-           TCATATTTGACCTAACAGCCGATTTATTCAATCACAGTCATCTTTTTGATCACCCGAAAT
JMFF036B03-                                                                  GAAAT
                      ____________________________________________________________
consensus             TCATATTTGACCTAACAGCCGATTTATTCAATCACAGTCATCTTTTTGATCACCCGAAAT
 
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JMFF047A07-           TTGGAGCTAAAGAAAATAGAACGGAAAATGTTCGGAAACAGCAGCCAATTCGACTCCGTC
JMFF036B03-           TTGGAGCTAAAGAAAATAGAACGGAAAATGTTCGGAAACAGCAGCCAATTCGACTCCGTC
                      ____________________________________________________________
consensus             TTGGAGCTAAAGAAAATAGAACGGAAAATGTTCGGAAACAGCAGCCAATTCGACTCCGTC
 
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JMFF047A07-           GCCGCCTTCTCCGGCGGCGGCTTTGTCCCATCTCAGTCCACTCAAGGCCCAGACGCATCC
JMFF036B03-           GCCGCCTTCTCCGGCGGCGGCTTTGTCCCATCTCAGTCCACTCAAGGCCCAGACGCATCC
                      ____________________________________________________________
consensus             GCCGCCTTCTCCGGCGGCGGCTTTGTCCCATCTCAGTCCACTCAAGGCCCAGACGCATCC
 
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JMFF047A07-           CATTCATCGGCCAAGAGTCGCGACCAGACGCCTCTGCTTCCACTAACAATGAAGCAGATA
JMFF036B03-           CATTCATCGGCCAAGAGTCGCGACCAGACGCCTCTGCTTCCACTAACAATGAAGCAGATA
                      ____________________________________________________________
consensus             CATTCATCGGCCAAGAGTCGCGACCAGACGCCTCTGCTTCCACTAACAATGAAGCAGATA
 
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JMFF047A07-           AGCCAAGCACTTCAATCGAGCAACGATNAGTCTAGTTTCCTGATTGACGGCATTGATGTC
JMFF036B03-           AGCCAAGCAGTTCAATCGAGCAACGATAAGTCTAGTTTCCTGATTGACGGCATTGATGTC
                      ____________________________________________________________
consensus             AGCCAAGCAGTTCAATCGAGCAACGATAAGTCTAGTTTCCTGATTGACGGCATTGATGTC
 
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JMFF047A07-           AGCAATGTGAGAGTGGTGGGGATGGCATTNCAGAAAGCTGAGAGGGTCACTGATGTAACA
JMFF036B03-           AGCAATGTGAGAGTGGTGGGGATGGCATTCAAGAAAGCTGAGAGGGTCACTGATGTAACA
                      ____________________________________________________________
consensus             AGCAATGTGAGAGTGGTGGGGATGGCATTCCAGAAAGCTGAGAGGGTCACTGATGTAACA
 
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JMFF047A07-           TTTGTGATTGATGATGGCACCGGTCGCATCGAATGCAATCGATGGCTGAATGATGCT   
JMFF036B03-           TTTGTGATTGATGATGGCACCGGTCGCATCGAATGCAATCGATGGCTGAATGATGCTGTT
                      ____________________________________________________________
consensus             TTTGTGATTGATGATGGCACCGGTCGCATCGAATGCAATCGATGGCTGAATGATGCTGTT
 
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JMFF036B03-           GACAACAATGAAGTAGGGGGAGTATTGGATGGGATGGTATGTTGTTGTTCATGGGCACTT
rJMFF036B03+                                    GGATGGGAT-GTATGTTGTTGTTCATGGGCACTT
                      ____________________________________________________________
consensus             GACAACAATGAAGTAGGGGGAGTATTGGATGGGATGGTATGTTGTTGTTCATGGGCACTT
 
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JMFF036B03-           GAAAAGCTTTCAGGGTAAAATGCAGATAAT                              
rJMFF036B03+          GAAAAGCTTTCAGGGTAAAATGCAGATAATGAGCTTTGCTAAGGCCTGTGACTGACTATA
                      ____________________________________________________________
consensus             GAAAAGCTTTCAGGGTAAAATGCAGATAATGAGCTTTGCTAAGGCCTGTGACTGACTATA
 
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rJMFF036B03+          ATATGATTGCAAACCACTTTCTTGAATGTATTTATGTCCATCAGTGCAATGCGAAGCCAA
                      ____________________________________________________________
consensus             ATATGATTGCAAACCACTTTCTTGAATGTATTTATGTCCATCAGTGCAATGCGAAGCCAA
 
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rJMFF036B03+          AGATACAAAGTAGCCTTTCTACCCAGAATCCATCTGAAGGACAGTCCCAGGTCAACACTC
rJMFF047A07+                                                                     C
                      ____________________________________________________________
consensus             AGATACAAAGTAGCCTTTCTACCCAGAATCCATCTGAAGGACAGTCCCAGGTCAACACTC
 
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rJMFF036B03+          AATCAAATGGATATAATTCTACCTCCACAGTTCAACTCTCTGGACAGAATTGTATGGATG
rJMFF047A07+          AATCAAANGGATATAATTCTACCTCCACAGTTCAACTCTCTGGACAGAATNGTATGGATG
                      ____________________________________________________________
consensus             AATCAAATGGATATAATTCTACCTCCACAGTTCAACTCTCTGGACAGAATTGTATGGATG
 
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rJMFF036B03+          GGCTCAAGGGAATTGAAAAAATGGTGATGGATTATTTGCATCAGCCTTCATCAATTGCGC
rJMFF047A07+          GGCTCAAGGGAATTGAAAAAATGATGATGGATTATTTGCATCAGCCTTCATCAATTGCGC
                      ____________________________________________________________
consensus             GGCTCAAGGGAATTGAAAAAATGGTGATGGATTATTTGCATCAGCCTTCATCAATTGCGC
 
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rJMFF036B03+          AGGAAAAGGGAATACACAGGAATGAGATCGCTCAACAGCTTAAAGTTCCATCGGAGAAGA
rJMFF047A07+          AGGAAAAGGGAATACACAGGAATGAGATCGCTCAACAGCTTAAAGTTCCATCGGAGAAGA
                      ____________________________________________________________
consensus             AGGAAAAGGGAATACACAGGAATGAGATCGCTCAACAGCTTAAAGTTCCATCGGAGAAGA
 
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rJMFF036B03+          TCTTGGAAGCAATTGAGTCACTTGAAACAGAAGGTCTGGTTTACTCTACCATTGACGAGT
rJMFF047A07+          TCTTGGAAGCAATTGAGTCACTTGAAACAGAAGGTCTGGTTTACTCTACCATTGACGAGT
                      ____________________________________________________________
consensus             TCTTGGAAGCAATTGAGTCACTTGAAACAGAAGGTCTGGTTTACTCTACCATTGACGAGT
 
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rJMFF036B03+          GCCACTATAAGTCTACTAGTGCTTGAAGCTCAATATCAGCATATATATTGGATAGCCAAG
rJMFF047A07+          GCCACTATAAGTCTACTAGTGCTTGAAGCTCAATATCAGCATATATATNGGATAGCCAAG
                      ____________________________________________________________
consensus             GCCACTATAAGTCTACTAGTGCTTGAAGCTCAATATCAGCATATATATTGGATAGCCAAG
 
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rJMFF036B03+          TTTGTTAGTATGGAGTGGCAGAACTAGTGTAATGTTACTAGGTTAATCCTATTCCCCATT
rJMFF047A07+          TTTGTTAGTATGGAGTGGCAGAACTAGTGTAATGTTACTAGGTTAATCCTATTCCCCATT
                      ____________________________________________________________
consensus             TTTGTTAGTATGGAGTGGCAGAACTAGTGTAATGTTACTAGGTTAATCCTATTCCCCATT
 
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rJMFF036B03+          TTATGTTGATGACAGAAGTGAATTTGCTTTACTACATATA                    
rJMFF047A07+          TTATGTTGATGACAGAAGTGAATTTGCTTTACTACATATATGTTAAACAAAGTTTAGAGT
                      ____________________________________________________________
consensus             TTATGTTGATGACAGAAGTGAATTTGCTTTACTACATATATGTTAAACAAAGTTTAGAGT
 
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rJMFF047A07+          GATATCTAATTTTATTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             GATATCTAATTTTATTAGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG