| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011D18 | Sequence | 598 | 013832 (6) | emb|CDO99108.1| | 8e-123 | unnamed protein product [Coffea canephora] | 800 | 013832 (6) | ref|XP_009587300.1| | 3e-119 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 {ECO:0000255| |
| JMFF016B10 | Sequence | 593 | 013832 (6) | emb|CDO99108.1| | 5e-122 | unnamed protein product [Coffea canephora] | 746 | 013832 (6) | ref|XP_009587300.1| | 1e-120 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 {ECO:0000255| |
| JMFF046N13 | Sequence | 473 | 013832 (6) | ref|XP_010525225.1| | 8e-81 | PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya has | 192 | 013832 (6) | |||
This contig is upended
. : . : . : . : . : . :
JMFF016B10- ATACAGAAACACTTTTCATACATCTTTTTGCGAGGAG
JMFF011D18- ATACAGAAACACTTTTCATACATCTTTTTGCGAGGAG
____________________________________________________________
consensus ATACAGAAACACTTTTCATACATCTTTTTGCGAGGAG
. : . : . : . : . : . :
JMFF016B10- GAGAATTCTAAGCCGTGGAAAAATGGGCTCAATTGAAAAGGATAGCCGGGAGGAAATTAT
JMFF011D18- GAGAATTCTAAGCCGTGGAAAAATGGGCTCAATTGAAAAGGATAGCCGGGAGGAAATTAT
rJMFF011D18+ AAAAATGGGCTCAATTGAAAAGGATAGCCGGGAGGAAATTAT
____________________________________________________________
consensus GAGAATTCTAAGCCGTGGAAAAATGGGCTCAATTGAAAAGGATAGCCGGGAGGAAATTAT
. : . : . : . : . : . :
JMFF016B10- TC-AGGCATGGTATATGGATGATAGCAATGAAGACCAGAGGCTTCCCCATCACCGCGAGC
JMFF011D18- TC-AGGCATGGTATATGGATGATAGCAATGAAGACCAGAGGCTTCCCCATCACCGCGAGC
rJMFF016B10+ CAGGCATGGTATATGGATGATAGCAATGAAGACCAGAGGCTTCCCCATCACCGCGAGC
JMFF046N13- ATGATAGCAATGAAGACCAGAGGCTTCCCCATCACCGCGAGC
rJMFF011D18+ TCAGGCCATGGTATATGGATGATAGCAATGAAGACCAGAGGCTTCCCCATCACCGCGAGC
____________________________________________________________
consensus TC-AGGCATGGTATATGGATGATAGCAATGAAGACCAGAGGCTTCCCCATCACCGCGAGC
. : . : . : . : . : . :
JMFF016B10- CAAAGCAGTTTGTCTCCCTAGACAAACTTGCTGAGCTTGGAGTGCTCAGCTGGAGGTTGG
JMFF011D18- CAAAGCAGTTTGTCTCCCTAGACAAACTTGCTGAGCTTGGAGTGCTCAGCTGGAGGTTGG
rJMFF016B10+ CAAAGCAGTTTGTCTCCCTAGACAAACTTGCTGAGCTTGGAGTGCTCAGCTGGAGGTTGG
JMFF046N13- CAAAGCAGATTGTCTCCCTAGACAAACTTGCTGAGCTTGGAGTGCTCAACTGGAGGTTGG
rJMFF011D18+ CAAAGCAGTTTGTCTCCCTAGACAAACTTGCTGAGCTTGGAGTGCTCAGCTGGAGGTTGG
____________________________________________________________
consensus CAAAGCAGTTTGTCTCCCTAGACAAACTTGCTGAGCTTGGAGTGCTCAGCTGGAGGTTGG
. : . : . : . : . : . :
JMFF016B10- ATGCTGACAAATATGAAACAGATGAGGAGTTGAAGAAAATCCGTGAATCCCGAGGATATT
JMFF011D18- ATGCTGACAAATATGAAACAGATGAGGAGTTGAAGAAAATCCGTGAATCCCGAGGATATT
rJMFF016B10+ ATGCTGACAAATATGAAACAGATGAGGAGTTGAAGAAAATCCGTGAATCCCGAGGATATT
JMFF046N13- ATGCTGACAAATATGAAACAGATGAGGAGTTGAAGAAAATCCGTGAATCCCGAGGATATT
rJMFF011D18+ ATGCTGACAAATATGAAACAGATGAGGAGTTGAAGAAAATCCGTGAATCCCGAGGATATT
____________________________________________________________
consensus ATGCTGACAAATATGAAACAGATGAGGAGTTGAAGAAAATCCGTGAATCCCGAGGATATT
. : . : . : . : . : . :
JMFF016B10- CATACATGGACTTCTGCGAGGTTTGCCCTGAGAAGTTGCCCAATTATGAAGAGAAGATCA
JMFF011D18- CATACATGGACTTCTGCGAGGTTTGCCCTGAGAAGTTGCCCAATTATGAAGAGAAGATCA
rJMFF016B10+ CATACATGGACTTCTGCGAGGTTTGCCCTGAGAAGTTGCCCAATTATGAAGAGAAGATCA
JMFF046N13- CATACATGGACTTCTGCGAGGTTTGCCCTGAGAAGTTGCCCAATTATGAAGAGAAGATCA
rJMFF011D18+ CATACATGGACTTCTGCGAGGTTTGCCCTGAGAAGTTGCCCAATTATGAAGAGAAGATCA
____________________________________________________________
consensus CATACATGGACTTCTGCGAGGTTTGCCCTGAGAAGTTGCCCAATTATGAAGAGAAGATCA
. : . : . : . : . : . :
JMFF016B10- AAAACTTCTTTGAAGAGCATCTGCACACAGATGAGGAAATCCGCTACTGTGTTGCTGGGA
JMFF011D18- AAAACTTCTTTGAAGAGCATCTGCACACAGATGAGGAAATCCGCTACTGTGTTGCTGGGA
rJMFF016B10+ AAAACTTCTTTGAAGAGCATCTGCACACAGATGAGGAAATCCGCTACTGTGTTGCTGGGA
JMFF046N13- AAAACTTCTTTGAAGAGCATCTGCACACAGATGAGGAAATCCGCTACTGTGTTGCTGGGA
rJMFF011D18+ AAAACTTCTTTGAAGAGCATCTGCACACAGATGAGGAAATCCGCTACTGTGTTGCTGGGA
____________________________________________________________
consensus AAAACTTCTTTGAAGAGCATCTGCACACAGATGAGGAAATCCGCTACTGTGTTGCTGGGA
. : . : . : . : . : . :
JMFF016B10- GTGGTTACTTTGATGTGCGTGACAAGAATGATGAATGGATCCGCATCTGGGTGAAGAGAG
JMFF011D18- GTGGTTACTTTGATGTGCGTGACAAGAATGATGAATGGATCCGCATCTGGGTGAAGAGAG
rJMFF016B10+ GTGGTTACTTTGATGTGCGTGACAAGAATGATGAATGGATCCGCATCTGGGTGAAGAGAG
JMFF046N13- GTGGTTACTTTGATGTGCGTGACAAGAATGATGAATGGATCCGCATCTGGGTGAAGAAAG
rJMFF011D18+ GTGGTTACTTTGATGTGCGTGACAAGAATGATGAATGGATCCGCATCTGGGTGAAGAGAG
____________________________________________________________
consensus GTGGTTACTTTGATGTGCGTGACAAGAATGATGAATGGATCCGCATCTGGGTGAAGAGAG
. : . : . : . : . : . :
JMFF016B10- GGGCAATGATTGTTCTGCCTGCTGGAATTTATCACCGTTTTACCCTTGATTCAAACAACT
JMFF011D18- GGGCAATGATTGTTCTGCCTGCTGGAATTTATCACCGTTTTACCCTTGATTCAAACAACT
rJMFF016B10+ GGGCAATGATTGTTCTGCCTGCTGGAATTTATCACCGTTTTACCCTTGATTCAAACAACT
JMFF046N13- GGGCAATGATTGTTCTGCCTGCTGGAATTTATCAC
rJMFF011D18+ GGGCAATGATTGTTCTGCCTGCTGGAATTTATCACCGTTTTACCCTTGATTCAAACAACT
____________________________________________________________
consensus GGGCAATGATTGTTCTGCCTGCTGGAATTTATCACCGTTTTACCCTTGATTCAAACAACT
. : . : . : . : . : . :
JMFF016B10- ACATTAAGGCGATGAGGCTCTTTGTCGGTGACCCAGTCTGGACCCCATTCAACCGTCCAC
JMFF011D18- ACATTAAGGCGATGAGGCTCTTTGTCGGTGACCCAGTCTGGACCCCATTCAACCGTCCAC
rJMFF016B10+ ACATTAAGGCGATGAGGCTCTTTGTCGGTGACCCAGTCTGGACCCCATTCAACCGTCCAC
rJMFF011D18+ ACATTAAGGCGATGAGGCTCTTTGTCGGTGACCCAGTCTGGACCCCATTCAACCGTCCAC
____________________________________________________________
consensus ACATTAAGGCGATGAGGCTCTTTGTCGGTGACCCAGTCTGGACCCCATTCAACCGTCCAC
. : . : . : . : . : . :
JMFF016B10- ATGACCATCTCCCTGCA
JMFF011D18- ATGACCATCTCCCTGCAAGGAA
rJMFF016B10+ ATGACCATCTCCCTGCAAGGAAAGAATACGTGGAAACATTTGTGCAGAATGATGGTACTG
rJMFF011D18+ ATGACCATCTCCCTGCAAGGAAAGAATACGTGGAAACATTTGTGCAGAATGATGGTACTG
____________________________________________________________
consensus ATGACCATCTCCCTGCAAGGAAAGAATACGTGGAAACATTTGTGCAGAATGATGGTACTG
. : . : . : . : . : . :
rJMFF016B10+ GGCATGCAGTTAATGCTGCTGCTTAAGTAAACTCTATAGCTGCTGCAGCTTTAACATTCC
rJMFF011D18+ GGCATGCAGTTAATGCTGCTGCTTAAGTAAACTCTATAGCTGCTGCAGCTTTAACATTCC
rJMFF046N13+ C
____________________________________________________________
consensus GGCATGCAGTTAATGCTGCTGCTTAAGTAAACTCTATAGCTGCTGCAGCTTTAACATTCC
. : . : . : . : . : . :
rJMFF016B10+ TACCTATTATACAACCCAGAAATCTTAGGACTATCCGACCTGGTAAATCTGTTATTGTGA
rJMFF011D18+ TACCTATTATACAACCCAGAAATCTTAGGACTATCCGACCTGGTAAATCTGTTATTGTGA
rJMFF046N13+ TACCTATTATACAACCCAGAAATCTTAGGACTATCCGACCTGGTAAATCTGTTATTGTGA
____________________________________________________________
consensus TACCTATTATACAACCCAGAAATCTTAGGACTATCCGACCTGGTAAATCTGTTATTGTGA
. : . : . : . : . : . :
rJMFF016B10+ TAACATCATAATAAT
rJMFF011D18+ TAACATCATAATAAT
rJMFF046N13+ TAACATCATAATAATGAATAATCTCACCCTTGGTTGTATGGGTGACTGCTCTGTCTTTTG
____________________________________________________________
consensus TAACATCATAATAATGAATAATCTCACCCTTGGTTGTATGGGTGACTGCTCTGTCTTTTG
. : . : . : . : . : . :
rJMFF046N13+ CTTCTGTTTGTTCGTATATAATACCATATTCTCTTTATAATAGTAAGAACAGTGTTCCAT
____________________________________________________________
consensus CTTCTGTTTGTTCGTATATAATACCATATTCTCTTTATAATAGTAAGAACAGTGTTCCAT