| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033M19 | Sequence | 149 | 010584 (7) | 719 | 013831 (6) | gb|KHN47122.1| | 1e-107 | UPF0051 protein ABCI8, chloroplastic [Glycine soja] | |||
| JMFF043J22 | Sequence | 648 | 010584 (7) | ref|XP_004234480.1| | 4e-88 | PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum] | 442 | 013831 (6) | ref|XP_004153521.1| | 3e-35 | PREDICTED: UPF0051 protein ABCI8, chloroplastic-like, partial [Cucumis sativus] |
| JMFF046M17 | Sequence | 631 | 010584 (7) | ref|XP_004234480.1| | 1e-79 | PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum] | 573 | 013831 (6) | gb|KHN47122.1| | 2e-64 | UPF0051 protein ABCI8, chloroplastic [Glycine soja] |
| JMFF049C09 | Sequence | 475 | 010584 (7) | ref|XP_004234480.1| | 9e-49 | PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum] | 377 | 013831 (6) | ref|XP_004153521.1| | 6e-33 | PREDICTED: UPF0051 protein ABCI8, chloroplastic-like, partial [Cucumis sativus] |
| JMSF007K22 | Sequence | 329 | 010584 (7) | 728 | 013831 (6) | gb|KHN47122.1| | 3e-109 | UPF0051 protein ABCI8, chloroplastic [Glycine soja] | |||
| JMSF034K12 | Sequence | 648 | 010584 (7) | ref|XP_004234480.1| | 1e-85 | PREDICTED: UPF0051 protein ABCI8, chloroplastic-like [Solanum lycopersicum] | 187 | 013831 (6) | ref|XP_004153521.1| | 2e-10 | PREDICTED: UPF0051 protein ABCI8, chloroplastic-like, partial [Cucumis sativus] |
This contig is upended
. : . : . : . : . : . :
rJMSF007K22+ GTTCTGGAGGGTGATGAATCGGTTGGC
rJMFF033M19+ TCTGGAGGGTGATGAATCGGTTGGC
____________________________________________________________
consensus GTTCTGGAGGGTGATGAATCGGTTGGC
. : . : . : . : . : . :
rJMSF007K22+ GAGTTTTATTCCGTTGCATTGACTAATAATTATCAGCAAGCTGATACGGGGACTAAGATG
rJMFF033M19+ GAGTTTTATTCCGTTGCATTGACTAATAATTATCAGCAAGCTGATACGGGGACTAAGATG
____________________________________________________________
consensus GAGTTTTATTCCGTTGCATTGACTAATAATTATCAGCAAGCTGATACGGGGACTAAGATG
. : . : . : . : . : . :
rJMSF007K22+ ATACACAAGGGTAAGAATACGAGAAGCAGGATAATTTCTAAGGGTATTTCAGCGGGGCAC
rJMFF033M19+ ATACACAAGGGTAAGAATACGAGAAGCAGGATAATTTNTAAGGGTATTTCAGCGGGGCAC
____________________________________________________________
consensus ATACACAAGGGTAAGAATACGAGAAGCAGGATAATTTCTAAGGGTATTTCAGCGGGGCAC
. : . : . : . : . : . :
rJMSF007K22+ TCTAGAAATTGTTACAGAGGACTTGTTCAAGTCATGTCCAGTGCAGATAATGCTCGGAAC
rJMFF033M19+ TCTAGAAATTGTTACAGAGGACTTGTTCAAGTCATGTCCAGTGCAGATAATGCTCGGAAC
rJMFF046M17+ TCAAGTCATGTCCAGTGCAGATAATGCTCGGAAC
____________________________________________________________
consensus TCTAGAAATTGTTACAGAGGACTTGTTCAAGTCATGTCCAGTGCAGATAATGCTCGGAAC
. : . : . : . : . : . :
rJMSF007K22+ TCCTCGCAATGTGACTCTATGCTCATTGGAAATAATGCCGCGGCTAACACTTACCCGTAT
rJMFF033M19+ TCCTCGCAATGTGACTCTATGCTCATTGGAAATAATGCCGCGGCTAACACTTACCCGTAT
rJMFF046M17+ TCCTCGCAATGTGACTCTATGCTCATTGGAAATAATGCCGCGGCTAACACTTACCCGTAT
____________________________________________________________
consensus TCCTCGCAATGTGACTCTATGCTCATTGGAAATAATGCCGCGGCTAACACTTACCCGTAT
. : . : . : . : . : . :
rJMSF007K22+ ATTCAGACCAAGAATCCCTCTGCCCGGATTGAACACGAAGCCACCACATCAAAAATCGGC
rJMFF049C09+ ATCAAAAATCGGG
rJMFF033M19+ ATTCAGACCAAGAATCCCTCTGCCCGGATTGAACACGAAGCCACCACATCAAAAATCGGC
rJMFF043J22+ CGAAGCCACCACATCAAAAATCGGC
rJMFF046M17+ ATTCAGACCAAGAATCCCTCTGCCCGGATTGAACACGAAGCCACCACATCAAAAATCGGC
____________________________________________________________
consensus ATTCAGACCAAGAATCCCTCTGCCCGGATTGAACACGAAGCCACCACATCAAAAATCGGC
. : . : . : . : . : . :
rJMSF034K12+ GCCATGGCAGCA
rJMSF007K22+ GAAGATCAATTATTCTACTTCCAGCAGAGGGGAATCGACTACGAAAAGGCCATGGCAGCA
rJMFF049C09+ GAAGATCAATTATTCTACTTCCAGCAGAGGGGAATCGACTACGAAAAGGCCATGGCAGCA
rJMFF033M19+ GAAGATCAATTATTCTACTTCCAGCAGAGGGGAATCGACTACGAAAAGGCCATGGCAGCA
rJMFF043J22+ GAAGATCAATTATTTTACTTCCAGCAGAGGGGAATTGACTACGAAAAGGCCATGGCAGCA
rJMFF046M17+ GAAGATCAATTATTCTACTTCCAGCAGAGGGGAATCGACTACGAAAAGGCCATGGCAGCA
____________________________________________________________
consensus GAAGATCAATTATTCTACTTCCAGCAGAGGGGAATCGACTACGAAAAGGCCATGGCAGCA
. : . : . : . : . : . :
rJMSF034K12+ NTGNTNTCCGGGTTTTGCAGGGACGTNNTCAATGNNCTTCCCGNCGAATTNGGCGNTGAA
rJMSF007K22+ ATGATATCCGGGTTTTGCAGGGACGTCTTCAATGAACTTCCCGACGAATTTGGCGCTGAA
rJMFF049C09+ ATGATATCCGGGTTTTGCAGGGACGTCTTCAATGAACTTCCCGACGAATTTGGCGCTGAA
rJMFF033M19+ ATGATATCCGGGTTTTGCAGGGACGTCTTCAATGAACTTCCCGACGAATTTGGCGCTGAA
rJMFF043J22+ ATGATATCCGGGTTTTGCAGGGACGTTTTCAATGAACTTCCCGACGAATTTGGCGCTGAA
rJMFF046M17+ ATGATATCCGGGTTTTGCAGGGACGTCTTCAATGAACTTCCCGACGAATTTGGCGCTGAA
____________________________________________________________
consensus ATGATATCCGGGTTTTGCAGGGACGTCTTCAATGAACTTCCCGACGAATTTGGCGCTGAA
. : . : . : . : . : . :
rJMSF034K12+ GTGAACCAGTTGATGANCTTGAAACTTGAAGGATCCGTCGGGTAGGCTCACCGGTGTTTT
rJMSF007K22+ GTGAACCAGTTGATGAGCTTGAAACTTGAAGGATCCGTCGGGTAGGCTCACCGGTGTTTT
rJMFF049C09+ GTGAACCAGTTGATGAGCTTGAAACTTGAAGGATCCGTCGGGTGTGCTCACCGGTGTTTT
rJMFF033M19+ GTGAACCAGTTGATGAGCTTGAAACTTGAAGGATCCGTCGGGTAGGCTCACCGGTGTTTT
rJMFF043J22+ GTGAACCAGTTGATGAGCTTGAAACTTGAAGGATCCGTCGGGTAGGCTCACCGGTGTTTT
rJMFF046M17+ GTGAACCAGTTGATGAGCTTGAAACTTGAAGGATCCGTCGGGTAGGCTCACCGGTGTTTT
____________________________________________________________
consensus GTGAACCAGTTGATGAGCTTGAAACTTGAAGGATCCGTCGGGTAGGCTCACCGGTGTTTT
. : . : . : . : . : . :
rJMSF034K12+ TCAGTCAATAANAAACCGATTTACCCNNCTTTAAACTTTTTGGAAGCTGTA
rJMSF007K22+ TCAGTCAATAAAAAAACGATTTACCCAACTTTAAACTTTTTGGAAGCTGTA-GCCATTAC
rJMFF049C09+ TCAGTCAATAAAAAAATGATTTACCCAACTTTAAACTTTTTGGATGCTGTACTCCATTAC
rJMFF033M19+ TCAGTCAATAAAAAAACGATTTACCCAACTTTAAACTTTTTGGAAGCTGTA-GCCATTAC
rJMFF043J22+ TCAGTCAATAAAAAAACGATTTACCCAACTTTAAACTTTTTGGAAGCTGTA-GCCATTAC
rJMFF046M17+ TCAGTCAATAAAAAAACGATTTACCCAACTTTAAACTTTTTGGAAGCTGTA-GCCATTAC
____________________________________________________________
consensus TCAGTCAATAAAAAAACGATTTACCCAACTTTAAACTTTTTGGAAGCTGTA-GCCATTAC
. : . : . : . : . : . :
rJMSF007K22+ CCAGGGATCTAAGATCTGTAAATTTGTCAAATTTCATATACTGGCAAGGAAAAAGGGGTG
rJMFF049C09+ CCACTCTTCTAAGATCTGTAAATTTGTCAAATTTCATATACTGGCAAGGAAAAAGGGGTG
rJMFF033M19+ CCAGGGATCTAAGATCTGTAAATTTGTCAAATTTCATATACTGGCAAGGAAAAAGGGGTG
rJMFF043J22+ CCAGGGATTTAAGATCTGTAAATTTGTCAAATTTCATATACTGGCAAGGAAAAAGGGGTG
rJMFF046M17+ CCAGGGATCTAAGATCTGTAAATTTGTCAAATTTCATATACTGGCAAGGAAAAAGGGTTG
____________________________________________________________
consensus CCAGGGATCTAAGATCTGTAAATTTGTCAAATTTCATATACTGGCAAGGAAAAAGGGGTG
. : . : . : . : . : . :
rJMSF007K22+ AATTGTACACAATGTAAATGTGAAAAACATTACTTCCTGGTGAGTTATGAAT
rJMFF049C09+ AATTGTACACAATGTAAATGTGAAAAACATTACTTCCTGGTGAGTTATGAATCCCTTGTA
rJMFF033M19+ AATTGTACACAATGTAAATGTGAAAAACATTACTTCCTGGTGAGTTATGAATCCCTTGTA
rJMFF043J22+ AATTGTACACAATGTAAATGTGAAAAACATTACTTCCTGGTGAGTTATGAATCCCTTGTA
rJMFF046M17+ AATTGTACACAATGTAAATGTGAAAAACATTACTTCCTGGTGAGTTATGAATCCCTTGTA
____________________________________________________________
consensus AATTGTACACAATGTAAATGTGAAAAACATTACTTCCTGGTGAGTTATGAATCCCTTGTA
. : . : . : . : . : . :
rJMFF049C09+ ATA
rJMFF033M19+ ATATTGTGTACCCTT
rJMFF043J22+ ATATTGTGTACCCTT
rJMFF046M17+ ATACTGTGTACCCTTXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus ATATTGTGTACCCTTNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG