Contig 013826:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028E15Sequence163003276 (5)711013826 (4)ref|XP_009788611.1|3e-105PREDICTED: acetolactate synthase small subunit 2, chloroplastic-like [Nicotiana
JMFF028G07Sequence535003276 (5)ref|XP_009778724.1|2e-59PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Nicotiana664013826 (4)emb|CDP04139.1|1e-107unnamed protein product [Coffea canephora]
JMFF045P16Sequence610003276 (5)ref|XP_009778724.1|5e-68PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Nicotiana593013826 (4)ref|XP_009788611.1|4e-88PREDICTED: acetolactate synthase small subunit 2, chloroplastic-like [Nicotiana
JMSF044I03Sequence744003276 (5)ref|XP_009604733.1|7e-105PREDICTED: acetolactate synthase small subunit 1, chloroplastic [Nicotiana tome695013826 (4)emb|CDP04139.1|8e-117unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF028E15+                             TNTAGGCCATTAAATCAAGACATGGAATTCTGATCCCATGA
                      ____________________________________________________________
consensus                                TNTAGGCCATTAAATCAAGACATGGAATTCTGATCCCATGA
 
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rJMFF028E15+          TTTATAGATTAATTGATTGATTGATTTTATACGAGAGACATAGAATGTTACTTTGATTCT
                      ____________________________________________________________
consensus             TTTATAGATTAATTGATTGATTGATTTTATACGAGAGACATAGAATGTTACTTTGATTCT
 
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rJMFF028E15+          CTATAAATAGTACAATGCCATAACTTTATTTGAGTGCTGCAGTCAAGTGGGCTTCAGTCA
rJMSF044I03+                                                    TCAAGTGGGCTTCAGTCA
rJMFF028G07+                                                    TCAAGTGGGCTTCAGTCA
                      ____________________________________________________________
consensus             CTATAAATAGTACAATGCCATAACTTTATTTGAGTGCTGCAGTCAAGTGGGCTTCAGTCA
 
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rJMFF028E15+          CACACTCTATCTATGCTTGTTAATGATTCACCTGGAGTACTCAACCTGTTGACTGGGGTT
rJMSF044I03+          CACACTCTATCTATGCTTGTTAATGATTCACCTGGAGTACTCAACCTGTTGACTGGGGTT
rJMFF028G07+          CACACTCTATCTATGCTTGTTAATGATTCACCTGGAGTACTCAACCTGTTGACTGGGGTT
                      ____________________________________________________________
consensus             CACACTCTATCTATGCTTGTTAATGATTCACCTGGAGTACTCAACCTGTTGACTGGGGTT
 
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rJMFF028E15+          ATATCTCGAAGAGGCTATAATATTCAGAGTCTTGCTGTAGGTCCTGCTGAGAGAGAGGGG
rJMSF044I03+          ATATCTCGAAGAGGCTATAATATTCAGAGTCTTGCTGTAGGTCCTGCTGAGAGAGAGGGG
rJMFF028G07+          ATATCTCGAAGAGGCTATAATATTCAGAGTCTTGCTGTAGGTCCTGCTGAGAGAGAGGGG
rJMFF045P16+                 GAAGAGGCTATAATATTCAGAGTCTTGCTGTAGGTCCTGCTGAGAGAGAGGGG
                      ____________________________________________________________
consensus             ATATCTCGAAGAGGCTATAATATTCAGAGTCTTGCTGTAGGTCCTGCTGAGAGAGAGGGG
 
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rJMFF028E15+          CTTTCACGCATTACTACAGTTATTCCTGGAACTGATGAAACTATCAGAAAATTGCTTCAG
rJMSF044I03+          CTTTCACGCATTACTACAGTTATTCCTGGAACTGATGAAACTATCAGAAAATTGCTTCAG
rJMFF028G07+          CTTTCACGCATTACTACAGTTATTCCTGGAACTGATGAAACTATCAGAAAATTGCTTCAG
rJMFF045P16+          CTTTCACGCATTACTACAGTTATTCCTGGAACTGATGAAACTATCAGAAAATTGCTTCAG
                      ____________________________________________________________
consensus             CTTTCACGCATTACTACAGTTATTCCTGGAACTGATGAAACTATCAGAAAATTGCTTCAG
 
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rJMFF028E15+          CACTTTTACAAGTTGGTGGATATTCATGAGGTTCAAGATTTAACTCGTTTACCCTTTGCG
rJMSF044I03+          CACTTTTACAAGTTGGTGGATATTCATGAGGTTCAAGATTTAACTCGTTTACCCTTTGCG
rJMFF028G07+          CACTTTTACAAGTTGGTGGATATTCATGAGGTTCAAGATTTAACTCGTTTACCCTTTGCG
rJMFF045P16+          CACTTTTACAAGTTGGTGGATATTCATGAGGTTCAAGATTTAACTCGTTTACCCTTTGCG
                      ____________________________________________________________
consensus             CACTTTTACAAGTTGGTGGATATTCATGAGGTTCAAGATTTAACTCGTTTACCCTTTGCG
 
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rJMFF028E15+          GAGAGGGAACTGATGCTGATAAAAGTGGCTGTTAATGCTACTGCTAGGAGGGATATCCTT
rJMSF044I03+          GAGAGGGAACTGATGCTGATAAAAGTGGCTGTTAATGCTACTGCTAGGAGGGATATCCTT
rJMFF028G07+          GAGAGGGAACTGATGCTGATAAAAGTGGCTGTTAATGCTACTGCTAGGAGGGATATCCTT
rJMFF045P16+          GAGAGGGAACTGATGCTGATAAAAGTGGCTGTTAATGCTACTGCTAGGAGGGATATCCTT
                      ____________________________________________________________
consensus             GAGAGGGAACTGATGCTGATAAAAGTGGCTGTTAATGCTACTGCTAGGAGGGATATCCTT
 
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rJMFF028E15+          GATATTGCCAGCATCTTCAGAGCTAAACCAGTTGATGTGTCTGATCATACAATAACATTG
rJMSF044I03+          GATATTGCCAGCATCTTCAGAGCTAAACCAGTTGATGTGTCTGATCATACAATAACATTG
rJMFF028G07+          GATATTGCCAGCATCTTCAGAGCTAAACCAGTTGATGTGTCTGATCATACAATAACATTG
rJMFF045P16+          GATATTGCCAGCATCTTCAGAGCTAAACCAGTTGATGTGTCTGATCATACAATAACATTG
                      ____________________________________________________________
consensus             GATATTGCCAGCATCTTCAGAGCTAAACCAGTTGATGTGTCTGATCATACAATAACATTG
 
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rJMFF028E15+          GAGTTGACAGGAGCCTTTAACAAGCTGCTTGCATTACAAAGATTATTGGAGCCCTATGGA
rJMSF044I03+          GAGTTGACAGGAGCCTTTAACAAGCTGCTTGCATTACAAAGATTATTGGAGCCCTATGGA
rJMFF028G07+          GAGTTGACAGGAGCCTTTAACAAGCTGCTTGCATTACAAAGATTATTGGAGCCCTATGGA
rJMFF045P16+          GAGTTGACAGGAGCCTTTAACAAGCTGCTTGCATTACAAAGATTATTGGAGCCCTATGGA
                      ____________________________________________________________
consensus             GAGTTGACAGGAGCCTTTAACAAGCTGCTTGCATTACAAAGATTATTGGAGCCCTATGGA
 
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rJMFF028E15+          ATTTGCGAGGTTGCACGGACTGGGCGTGTGGCACTGGTGCGAGAATCAGGTGTAGACTCG
rJMSF044I03+          ATTTGCGAGGTTGCACGGACTGGGCGTGTGGCACTGGTGCGAGAATCAGGTGTAGACTCG
rJMFF028G07+          ATTTGCGAGGTTGCACGGACTGGGCGTGTGGCACTGGTGCGAGAATCAGGTGTAGACTCG
rJMFF045P16+          ATTTGCGAGGTTGCACGGACTGGGCGTGTGGCACTGGTGCGAGAATCAGGTGTAGACTCG
                      ____________________________________________________________
consensus             ATTTGCGAGGTTGCACGGACTGGGCGTGTGGCACTGGTGCGAGAATCAGGTGTAGACTCG
 
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rJMFF028E15+          ACGTCCCTTCGGGGTTATTGTCTTCCTTTGTAGTTTGTAGTGCATATATATTACTAAAAG
rJMSF044I03+          ACGTCCCTTCGGGGTTATTGTCTTCCTTTGTAGTTTGTAGTGCATATATATTACTAAAAG
rJMFF028G07+          ACGTCCCTTCGGGGTTATTGTCTTCCTTTGTAGTTTGTAGTGCATATATATTACTAAAAG
rJMFF045P16+          ACGTCCCTTCGGGGTTATTGTCTTCCTTTGTAGTTTGTAGTGCATATATATTACTAAAAG
                      ____________________________________________________________
consensus             ACGTCCCTTCGGGGTTATTGTCTTCCTTTGTAGTTTGTAGTGCATATATATTACTAAAAG
 
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rJMFF028E15+          AATAAGGAAT                                                  
rJMSF044I03+          AATAAGGAATTATGTGCTTTTATTAGGTTCAAATGTTTCACCTATGACAGAAATTCTATG
rJMFF028G07+          AATAAGGAATTATGTGCTTTTATTAGGTTCAAATGTTTCACCTATGACAGAAATTCTATG
rJMFF045P16+          AATAAGGAATTATGTGCTTTTATTAGGTTCAAATGTTTCACCTATGACAGAAATTCTATG
                      ____________________________________________________________
consensus             AATAAGGAATTATGTGCTTTTATTAGGTTCAAATGTTTCACCTATGACAGAAATTCTATG
 
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rJMSF044I03+          TATTTGGTACT                                                 
rJMFF028G07+          TATTTGGTACTGGTTCTTGATGAGTTC                                 
rJMFF045P16+          TATTTGGTACTGGTTCTTGATGAGTTCTGTAAATTCTATGAAATTATATGTATTTACAAC
                      ____________________________________________________________
consensus             TATTTGGTACTGGTTCTTGATGAGTTCTGTAAATTCTATGAAATTATATGTATTTACAAC