Contig 013818:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004K01Sequence251004456 (4)659013818 (4)ref|XP_009591120.1|89.7PREDICTED: probable transcription factor PosF21 [Nicotiana tomentosiformis]
JMFF004K07Sequence544004456 (4)700013818 (4)ref|XP_009591120.1|112PREDICTED: probable transcription factor PosF21 [Nicotiana tomentosiformis]
JMFF017M19Sequence571004456 (4)466013818 (4)
JMFF045G04Sequence641004456 (4)559013818 (4)

Alignment

This contig is upended


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rJMFF004K07+                 CTGAGAACAGTGAACTTAAGCTGCGCTTGCAAACAATGGANCAACAAGTGCAC
rJMFF004K01+                                                          CAACAAGTGCAC
                      ____________________________________________________________
consensus                    CTGAGAACAGTGAACTTAAGCTGCGCTTGCAAACAATGGANCAACAAGTGCAC
 
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rJMFF004K07+          TNGCAAGATGCCTTAAATGATGCTGTAAAAGAGGAGATACAGCATCTGAAAGTTTTANCG
rJMFF004K01+          TNGCAAGATGCNTTAAATGATGCTGTAAAAGAGGAGATACAGCATCTGAAAGTTTTANCG
                      ____________________________________________________________
consensus             TNGCAAGATGCCTTAAATGATGCTGTAAAAGAGGAGATACAGCATCTGAAAGTTTTANCG
 
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rJMFF004K07+          GGGCAAGGCATGGCAAACGGTGGACCTATGATGATGAACTTCGGTCCATCCTTTGGAGCG
rJMFF004K01+          GGGCAAGGCATGGCAAACGGTGGACCTATGATGATGAACTTCGGTCCATCCTTTGGAGCG
rJMFF045G04+                                                   CGGTCCATCCTTTGGAGCG
                      ____________________________________________________________
consensus             GGGCAAGGCATGGCAAACGGTGGACCTATGATGATGAACTTCGGTCCATCCTTTGGAGCG
 
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rJMFF017M19+                                    CCATGCCATGCACACATTGTTAACGGCACATCAG
rJMFF004K07+          GGCCAGCAACAATTTTATCCCAACAACCATGCCATGCACACATTGTTAACGGCACATCAG
rJMFF004K01+          GGCCAGCAACAATTTTATCCCAACAACCATGCCATGCACACATTGTTAACGGCACATCAG
rJMFF045G04+          GGCCAGCAACAATTTTATCCCAACAACCATGCCATGCACACATTGTTAACGGCACATCAG
                      ____________________________________________________________
consensus             GGCCAGCAACAATTTTATCCCAACAACCATGCCATGCACACATTGTTAACGGCACATCAG
 
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rJMFF017M19+          CTTCANCAGCTTCAGTTACATTCTCAAAAGCCGCNTNTTCAACAGCATCANTTACGCCCG
rJMFF004K07+          CTTCAACAGCTTCAGTTACATTCTCAAAAGCCGCCTTTTCAACAGCATCAANTACGCCCG
rJMFF004K01+          CTTCAACAGCTTCAGTTACATTCTCAAAAGCCGCCTTTTCAACAGCATCAANTACGCCCG
rJMFF045G04+          CTTCAACAGCTTCAGTTACATTTTCAAAAGCCGCCTTTTCAACAGCATCAACTACGCCCG
                      ____________________________________________________________
consensus             CTTCAACAGCTTCAGTTACATTCTCAAAAGCCGCCTTTTCAACAGCATCAATTACGCCCG
 
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rJMFF017M19+          TTTCAACNGCAGCANCCNCNGCAGCAGCATCCGCNTCCTCTGCAGCCACAGGAACAACAT
rJMFF004K07+          TTTCAACTGCAGCAACCACCGCAGCAGCANCCGCCTCCTCTGCAGCCACAGGAACAACAT
rJMFF004K01+          TTTCAACTGCAGCAACCACCGCAGCAGCANCCGCCTCCTCTGCAGCCACAGGAACAACAT
rJMFF045G04+          TTTCAACTGCAGCAACCACCGCAGCAGCAACCGCCTCCTTTGCAGCCACAGGAACAACAT
                      ____________________________________________________________
consensus             TTTCAACTGCAGCAACCACCGCAGCAGCATCCGCCTCCTCTGCAGCCACAGGAACAACAT
 
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rJMFF017M19+          NTGCNNCAAGGCGGGGANTCAAAGTTGAGAAGTTCAANGTCAGCAAGTGNTCTCNCNGAG
rJMFF004K07+          TTGCACCAAGGCGGGGACTCAAAGTTGNGAAGTTCAATGTCAGCAAGTGCTCTCACCGAG
rJMFF004K01+          TTGCACCAAGGCGGGGACTCAAAGTTGNGAAGTTCAATGTCAGCAAGTGCTCTCACCGAG
rJMFF045G04+          TTGCACCAAGGCGGGGACTCAAAGTTGCGAAGTTCAATGTCAGCAAGTGCTCTCACCGAG
                      ____________________________________________________________
consensus             TTGCACCAAGGCGGGGACTCAAAGTTGCGAAGTTCAATGTCAGCAAGTGCTCTCACCGAG
 
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rJMFF017M19+          CATGCTTGTGACNCNTGCANTTCTANGAAGGAGTGAGATGAGANGGAAAGAAGTATGTTT
rJMFF004K07+          CATGCTTNTGACACCTGCACTTCTATGAAGGANTGAGATGAGATGGAAAGAAGTATGTTT
rJMFF004K01+          CATGCTTNTGACACCTGCACTTCTATGAAGGANTGAGATGAGATGGAAAGAAGTATGTTT
rJMFF045G04+          CATGCTTTTGACACCTGCACTTTTATGAAGGACTGAGATGAGATGGAAAGAAGTATGTTT
                      ____________________________________________________________
consensus             CATGCTTTTGACACCTGCACTTCTATGAAGGAGTGAGATGAGATGGAAAGAAGTATGTTT
 
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rJMFF017M19+          TGTCNCNACGCNAGATAGTCGGTCCGAAATCTTTTATNGCCTTTGTAGCTCTGTCACTGT
rJMFF004K07+          TGTCCCAACGCTAGATAGTCGGTCCGAAATCTTTTATTGCCTTTGTAGCTCTCTCACTGT
rJMFF004K01+          TGTCCCAACGCTAGATAGTCGGTCCGAAATCTTTTATTGCCTTTGTAGCTCTCTCACTGT
rJMFF045G04+          TGTCCCAACGCTAGATAGTCGGTCCGAAATCTTTTATTGCCTTTGTAGCTCTCTCACTGT
                      ____________________________________________________________
consensus             TGTCCCAACGCTAGATAGTCGGTCCGAAATCTTTTATTGCCTTTGTAGCTCTCTCACTGT
 
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rJMFF017M19+          NGATTTAGGATGCATCATGCATAGNCTCGCCCGCACNTTTATTCTATAATACTCAAGTGC
rJMFF004K07+          TGATTTAGGATGCATCATGCATAGACTCGCCCGCACCTTTATTCTATAATACTCAAGTGC
rJMFF004K01+          TGATTTAGGATGCATCATGCATAGACTCGCCCGCACCTTTATTCTATAATACTCAAGTGC
rJMFF045G04+          TGATTTAGGATGCATCATGCATAGACTCGCCCGCACCTTTATTCTATAATACTCAAGTGC
                      ____________________________________________________________
consensus             TGATTTAGGATGCATCATGCATAGACTCGCCCGCACCTTTATTCTATAATACTCAAGTGC
 
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rJMFF017M19+          CCCTNGGAATCGTAGTTCGTTAAAATGATACTATTATTCAAATATTAAGTGCTCTATTGT
rJMFF004K07+          CCCTNGGAATCGTAGTTCGTTAAAATGATACTNTTATTCAAATATTAAGTGCTCTATTGT
rJMFF004K01+          CCCTNGGAATCGTAGTTCGTTAAAATGATACTNTTATTCAAATATTAAGTGCTCTATTGT
rJMFF045G04+          CCCTTGGAATCGTAGTTCGTTAAAATGATACTTTTATTCAAATATTAAGTGCTCTATTGT
                      ____________________________________________________________
consensus             CCCTTGGAATCGTAGTTCGTTAAAATGATACTTTTATTCAAATATTAAGTGCTCTATTGT
 
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rJMFF017M19+          NTGNAGGTTATG                                                
rJMFF004K07+          TTGTAGGTTATGCATGTGTTGTCT                                    
rJMFF004K01+          TTGTAGGTTATGCATGTGTTGTC-TTTGAAGAAAGAAAGAAAGAAAGT            
rJMFF045G04+          TTGTAGGTTATGCATGTGTTGTCTTTTGAAGAAAGAAAGAAAGAAAGTTCAATTTTGGGT
                      ____________________________________________________________
consensus             TTGTAGGTTATGCATGTGTTGTCTTTTGAAGAAAGAAAGAAAGAAAGTTCAATTTTGGGT