Contig 013815:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039N01Sequence492013815 (4)emb|CDO99062.1|6e-49unnamed protein product [Coffea canephora]698013815 (4)ref|XP_004234013.1|3e-65PREDICTED: ferredoxin, root R-B2 [Solanum lycopersicum]
JMFF044H19Sequence617013815 (4)ref|XP_004234013.1|9e-66PREDICTED: ferredoxin, root R-B2 [Solanum lycopersicum]604013815 (4)ref|XP_004234013.1|1e-65PREDICTED: ferredoxin, root R-B2 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF039N01+                                           TCGAGANCNTCCCACGGTTTCTCGAGT
                      ____________________________________________________________
consensus                                              TCGAGANCNTCCCACGGTTTCTCGAGT
 
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JMFF039N01-                        AAATCTGTGCAATAACTTCTCACTAAAAAACCTTATCCTATCCTACA
rJMFF039N01+          CATCGNTGATCCAAAATCTGTGCAATAACTTCTCANTAAAAAACCTTATCCTATCCTACA
                      ____________________________________________________________
consensus             CATCGNTGATCCAAAATCTGTGCAATAACTTCTCACTAAAAAACCTTATCCTATCCTACA
 
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JMFF039N01-           CCAAGCATTTCTCACCACACCAAAAACTGCTCCACTTCAGTTCCAGCACCAGAACACAAA
rJMFF039N01+          CCAAGCATTTCTCACCACACCAAAAACTGCTCCACTTCAGTTCCAGCACCAGAACACAAA
JMFF044H19-                           ACACCAAAAACTGCTCCACTTCAGTTCCAGCACCAGAACACAAA
rJMFF044H19+                                                                  CAAA
                      ____________________________________________________________
consensus             CCAAGCATTTCTCACCACACCAAAAACTGCTCCACTTCAGTTCCAGCACCAGAACACAAA
 
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JMFF039N01-           ACCAAAACCATGGCAACACTTCACTTTCCAACAACCCCTTCCTTCACGCTCACCACTCCA
rJMFF039N01+          ACCAAAACCATGGCAACACTTCACTTTCCAACAACCCCTTCCTTCACGCTCACCACTCCA
JMFF044H19-           ACCAAAACCATGGCAACACTTCACTTTCCAACAACCCCTTCCTTCACGCTCACCACTCCA
rJMFF044H19+          ACCAAAACCATGGCAACACTTCACTTTCCAACAACCCCTTCCTTCACGCTCACCACTCCA
                      ____________________________________________________________
consensus             ACCAAAACCATGGCAACACTTCACTTTCCAACAACCCCTTCCTTCACGCTCACCACTCCA
 
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JMFF039N01-           AGAAAGCAGGTCAGCCTCCCTGCAATCCAGCAGAGCAGCCGGTTTCCCCATACGACCCCA
rJMFF039N01+          AGAAAGCAGGTCAGCCTCCCTGCAATCCAGCAGAGCAGCCGGTTTCCCCATACGACCCCA
JMFF044H19-           AGAAAGCAGGTCAGCCTCCCTGCAATCCAGCAGAGCAGCCGGTTTCCCCATACGACCCCA
rJMFF044H19+          AGAAAGCAGGTCAGCCTCCCTGCAATCCAGCAGAGCAGCCGGTTTCCCCATACGACCCCA
                      ____________________________________________________________
consensus             AGAAAGCAGGTCAGCCTCCCTGCAATCCAGCAGAGCAGCCGGTTTCCCCATACGACCCCA
 
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JMFF039N01-           GGCCGTCGCCTATCCTGCATTCCCCGGGCTTACAAAGTGTTAGTTGAACATGAGGGTAAA
rJMFF039N01+          GGCCGTCGCCTATCCTGCATTCCCCGGGCTTACAAAGTGTTAGTTGAACATGAGGGTAAA
JMFF044H19-           GGCCGTCGCCTATCCTGCATTCCCCGGGCTTACAAAGTGTTAGTTGAACATGAGGGTAAA
rJMFF044H19+          GGCCGTCGCCTATCCTGCATTCCCCGGGCTTACAAAGTGTTAGTTGAACATGAGGGTAAA
                      ____________________________________________________________
consensus             GGCCGTCGCCTATCCTGCATTCCCCGGGCTTACAAAGTGTTAGTTGAACATGAGGGTAAA
 
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JMFF039N01-           ACAACTGAGCTAGAGGTTGAACCTGATGAGAGCATTCTTTCCAAGGCATTGGACTCTGGC
rJMFF039N01+          ACAACTGAGCTAGAGGTTGAACCTGATGAGAGCATTCTTTCCAAGGCATTGGACTCTGGC
JMFF044H19-           ACAACTGAGCTAGAGGTTGAACCTGATGAGAGCATTCTTTCCAAGGCATTGGACTCTGGC
rJMFF044H19+          ACAACTGAGCTAGAGGTTGAACCTGATGAGAGCATTCTTTCCAAGGCATTGGACTCTGGC
                      ____________________________________________________________
consensus             ACAACTGAGCTAGAGGTTGAACCTGATGAGAGCATTCTTTCCAAGGCATTGGACTCTGGC
 
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JMFF039N01-           TTGTCTGTGCCACATGACTGCAAACTAGGGGTGTGCATGACCTGCCCAGCTCGGCTTCTC
rJMFF039N01+          TTGTCTGTGCCACATGACTGCAAACTAGGGGTGTGCATGACCTGCCCAGCTCGGCTTCTC
JMFF044H19-           TTGTCTGTGCCACATGACTGCAAACTAGGGGTGTGCATGACCTGCCCAGCTCGGCTTCTC
rJMFF044H19+          TTGTCTGTGCCACATGACTGCAAACTAGGGGTGTGCATGACCTGCCCAGCTCGGCTTCTC
                      ____________________________________________________________
consensus             TTGTCTGTGCCACATGACTGCAAACTAGGGGTGTGCATGACCTGCCCAGCTCGGCTTCTC
 
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JMFF039N01-           AGCGGAACAGTGGATCAGAGCGATGGAATGCTTAGTGATGATGTTGTGGAGAGCGGGTAC
rJMFF039N01+          AGCGGAACAGTGGATCAGAGCGATGGAATGCTTAGTGATGATGTTGTGGAGAGCGGGTAC
JMFF044H19-           AGCGGAACAGTGGATCAGAGCGATGGAATGCTTAGTGATGATGTTGTGGAGAGCGGGTAC
rJMFF044H19+          AGCGGAACAGTGGATCAGAGCGATGGAATGCTTAGTGATGATGTTGTGGAGAGCGGGTAC
                      ____________________________________________________________
consensus             AGCGGAACAGTGGATCAGAGCGATGGAATGCTTAGTGATGATGTTGTGGAGAGCGGGTAC
 
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JMFF039N01-           GCTTTACTCTGTGCAGCTTATCCAA                                   
rJMFF039N01+          GCTTTACTCTGTGCAGCTTATCCAAGATCAGATTGCCATATTAGGGTCATACCTGAAGAA
JMFF044H19-           GCTTTACTCTGTGCAGCTTATCCAAGATCAGATTGCCATATTAGGGTCATACCTGAAGAA
rJMFF044H19+          GCTTTACTCTGTGCAGCTTATCCAAGATCAGATTGCCATATTAGGGTCATACCTGAAGAA
                      ____________________________________________________________
consensus             GCTTTACTCTGTGCAGCTTATCCAAGATCAGATTGCCATATTAGGGTCATACCTGAAGAA
 
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rJMFF039N01+          GAGCTGCTGTCACTGCAGCTAGCAACTGCCAATGACTAAACGCTAAGAGTGTCTGTTTGT
JMFF044H19-           GAGCTGCTGTCACTGCAGCTAGCAACTGCCAATGACTAAACGCTAAGAGTGTCTGTTTGT
rJMFF044H19+          GAGCTGCTGTCACTGCAGCTAGCAACTGCCAATGACTAAACGCTAAGAGTGTCTGTTTGT
                      ____________________________________________________________
consensus             GAGCTGCTGTCACTGCAGCTAGCAACTGCCAATGACTAAACGCTAAGAGTGTCTGTTTGT
 
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rJMFF039N01+          TCCCATTTTTTGTGGATTGATAAGATGATGTAACACATTTATATGTATTGACTAAGGCTT
JMFF044H19-           TCCCATTTTTTGTGGATTGATAAGATGATGTAACACATTTATATGTATTGACTAAGGCTT
rJMFF044H19+          TCCCATTTTTTGTGGATTGATAAGATGATGTAACACATTTATATGTATTGACTAAGGCTT
                      ____________________________________________________________
consensus             TCCCATTTTTTGTGGATTGATAAGATGATGTAACACATTTATATGTATTGACTAAGGCTT
 
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JMFF044H19-           TGAATCANAAACATGTGTTGCTTACTGCTA                              
rJMFF044H19+          TGAATCAAAAACATGTGTTGCTTACTGCTAAATAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TGAATCAAAAACATGTGTTGCTTACTGCTAAATAAAAAAAAAAAAAAAACTCTCCAGGGT