Contig 013814:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018G02Sequence509003892 (6)ref|XP_006357482.1|1e-69PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]710013814 (6)ref|XP_009628597.1|4e-35PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMFF044H10Sequence627003892 (6)ref|XP_006367642.1|4e-91PREDICTED: adenylate cyclase, terminal-differentiation specific-like [Solanum t552013814 (6)ref|XP_009628597.1|1e-29PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF018K17Sequence575003892 (6)ref|XP_009782976.1|2e-07PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve785013814 (6)ref|XP_004248167.1|5e-67PREDICTED: bromodomain-containing protein 4 [Solanum lycopersicum]
JMSF024K20Sequence631003892 (6)ref|XP_006367642.1|7e-93PREDICTED: adenylate cyclase, terminal-differentiation specific-like [Solanum t761013814 (6)ref|XP_004248167.1|3e-62PREDICTED: bromodomain-containing protein 4 [Solanum lycopersicum]
JMSF038L23Sequence719003892 (6)ref|XP_009628959.1|1e-74PREDICTED: extensin-like [Nicotiana tomentosiformis]841013814 (6)ref|XP_009628597.1|5e-75PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF049B10Sequence699003892 (6)ref|XP_009782976.1|7e-24PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve800013814 (6)ref|XP_009628597.1|2e-73PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF049B10+                                               CAAATAACATGTCAATGCAAGTG
rJMSF038L23+                                 TTCCGAGATGGTTCCAAATAACATGTCAATGCAAGTG
                      ____________________________________________________________
consensus                                    TTCCGAGATGGTTCCAAATAACATGTCAATGCAAGTG
 
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rJMSF049B10+          CCTTTCTCTGGAATGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
rJMSF038L23+          CCTTTCTCTGGAATGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
rJMSF018K17+                       TGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
rJMSF024K20+                                                   GGGAATGCCGTATGGTAGC
                      ____________________________________________________________
consensus             CCTTTCTCTGGAATGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
 
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rJMSF049B10+          GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
rJMSF038L23+          GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
rJMSF018K17+          GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
rJMSF024K20+          GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
                      ____________________________________________________________
consensus             GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
 
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rJMSF049B10+          TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMSF038L23+          TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMSF018K17+          TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMSF024K20+          TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMFF018G02+              CCCCCGGGGATGGNTACGGGGTAAGTGGACCACACCCATTCGTTTGCCCCCGGAAA
                      ____________________________________________________________
consensus             TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
 
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rJMSF049B10+          TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMSF038L23+          TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMSF018K17+          TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMSF024K20+          TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMFF018G02+          TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCACCCCCAACAACCTATCT
                      ____________________________________________________________
consensus             TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
 
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rJMSF049B10+          TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMSF038L23+          TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMSF018K17+          TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMSF024K20+          TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMFF018G02+          TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMFF044H10+                                                         CCACAGCCTGCCA
                      ____________________________________________________________
consensus             TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
 
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rJMSF049B10+          ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMSF038L23+          ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMSF018K17+          ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMSF024K20+          ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMFF018G02+          ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMFF044H10+          ACANTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
                      ____________________________________________________________
consensus             ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
 
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rJMSF049B10+          TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMSF038L23+          TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMSF018K17+          TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMSF024K20+          TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMFF018G02+          TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMFF044H10+          TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
                      ____________________________________________________________
consensus             TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
 
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rJMSF049B10+          GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMSF038L23+          GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMSF018K17+          GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMSF024K20+          GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMFF018G02+          GGATGGAGGAGAGCGGTCAGCCTGTTGATTNCAACGCTGTGCTCGATCGACTAAACGGAC
rJMFF044H10+          GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
                      ____________________________________________________________
consensus             GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
 
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rJMSF049B10+          ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMSF038L23+          ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMSF018K17+          ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMSF024K20+          ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMFF018G02+          ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMFF044H10+          ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
                      ____________________________________________________________
consensus             ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
 
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rJMSF049B10+          TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMSF038L23+          TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMSF018K17+          TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMSF024K20+          TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMFF018G02+          TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMFF044H10+          TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
                      ____________________________________________________________
consensus             TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
 
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rJMSF049B10+          GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMSF038L23+          GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMSF018K17+          GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMSF024K20+          GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMFF018G02+          GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMFF044H10+          GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
                      ____________________________________________________________
consensus             GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
 
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rJMSF049B10+          ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMSF038L23+          ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMSF018K17+          ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMSF024K20+          ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMFF018G02+          ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMFF044H10+          ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
                      ____________________________________________________________
consensus             ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
 
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rJMSF049B10+          TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGT                  
rJMSF038L23+          TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTANCATGGTTGTAACCTTAACTGCTGT
rJMSF018K17+          TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
rJMSF024K20+          TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
rJMFF018G02+          TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
rJMFF044H10+          TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
                      ____________________________________________________________
consensus             TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
 
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rJMSF038L23+          GTTTTTCTGCAAGCAGAAA                                         
rJMSF018K17+          GTTTTTCTGCAAGCAGAAACC                                       
rJMSF024K20+          GTTTTTCTGCAAGCAGAAACC                                       
rJMFF018G02+          GTTTTTCTGCAAGCAGAAACCTTGTTGGATATCTA                         
rJMFF044H10+          GTTTTTCTGCAAGCAGAAACCTTGTTGGATATCTATTGCATTTGACCTTTATTTTGTCTC
                      ____________________________________________________________
consensus             GTTTTTCTGCAAGCAGAAACCTTGTTGGATATCTATTGCATTTGACCTTTATTTTGTCTC