| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022O12 | Sequence | 365 | 022734 | gb|KJB14912.1| | 9e-61 | hypothetical protein B456_002G148400 [Gossypium raimondii] | 809 | 013804 (5) | ref|XP_009762277.1| | 2e-34 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch |
| JMFF043D23 | Sequence | 638 | 017395 | ref|XP_009588986.1| | 2e-55 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch | 638 | 013804 (5) | ref|XP_009762277.1| | 1e-04 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch |
| JMFF043P20 | Sequence | 647 | 013094 (15) | ref|XP_009588986.1| | 7e-66 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch | 606 | 013804 (5) | ref|XP_009762277.1| | 1e-04 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch |
| JMSF039F15 | Sequence | 582 | 013094 (15) | ref|XP_009762277.1| | 2e-41 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch | 853 | 013804 (5) | ref|XP_009762277.1| | 2e-42 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch |
| JMSF042J09 | Sequence | 600 | 013094 (15) | ref|XP_009588986.1| | 7e-42 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch | 773 | 013804 (5) | ref|XP_009762277.1| | 3e-29 | PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, ch |
This contig is upended
. : . : . : . : . : . :
rJMSF039F15+ CTGATATCAAGAGAAGT
____________________________________________________________
consensus CTGATATCAAGAGAAGT
. : . : . : . : . : . :
rJMSF039F15+ GGGGTGTCAACACTAGCAGAGTTAGACCAAGGTTTGAAGGATAAACTTGCTCAATTGAAA
rJMFF022O12+ TAAACTTGCTCAATTGAAA
____________________________________________________________
consensus GGGGTGTCAACACTAGCAGAGTTAGACCAAGGTTTGAAGGATAAACTTGCTCAATTGAAA
. : . : . : . : . : . :
rJMSF039F15+ AGTGAGATAAAATCTGAATTTGCAGCTGCTCTTGAACCCTCAGGTTTGCATGTCGTTTCA
rJMFF022O12+ AGTGAGATAAAATCTGAATTTGCAGCTGCTCTTGAACCNTCAGGTTTGCATGTCGTTTCA
rJMSF042J09+ TTGCAGCTGCTCTTGAACCCTCAGGTTTGCATGTCGTTTCA
____________________________________________________________
consensus AGTGAGATAAAATCTGAATTTGCAGCTGCTCTTGAACCCTCAGGTTTGCATGTCGTTTCA
. : . : . : . : . : . :
rJMSF039F15+ CCTTCGTTCCTAGATGCCAGGGTAAAAATAGATAGCTTTAACAGTGAAATTGGTCATGTT
rJMFF022O12+ CCTTCGTTCCTAGATGCCAGGGTAAAAATAGATAGCTTTAACAGTGAAATTGGTCATGTT
rJMSF042J09+ CCTTCGTTCCTAGATGCCAGGGTAAAAATAGATAGCTTTAACAGTGAAATTGGTCATGTT
____________________________________________________________
consensus CCTTCGTTCCTAGATGCCAGGGTAAAAATAGATAGCTTTAACAGTGAAATTGGTCATGTT
. : . : . : . : . : . :
rJMSF039F15+ ATGGAAGATGTTGTGAATTCGACTGATTTGAAAAACAAGATTGAGTTGTTGAAAATTGAG
rJMFF022O12+ ATGGAAGATGTTGTGAATTCGACTGATTTGAAAAACAAGATTGAGTTGTTGAAAATTGAG
rJMSF042J09+ ATGGAAGATGTTGTGAATTCGACTGATTTGAAAAACAAGATTGAGTTGTTGAAAATTGAG
____________________________________________________________
consensus ATGGAAGATGTTGTGAATTCGACTGATTTGAAAAACAAGATTGAGTTGTTGAAAATTGAG
. : . : . : . : . : . :
rJMSF039F15+ GTAGCTAAGGCAGGTAAGACACCGGATGAAGAGTCAAAAGCCAAGATTGAGGCTCTGAAG
rJMFF022O12+ GTAGCTAAGGCAGGTAAGACACCGGATGAAGAGTCAAAAGCCAAGATTGAGGCTCTGAAG
rJMSF042J09+ GTAGCTAAGGCAGGTAAGACACCGGATGAAGAGTCAAAAGCCAAGATTGAGGCTCTGAAG
rJMFF043P20+ CGGATGAAGAGTCAAAAGCCAAGATTGAGGCTCTGAAG
rJMFF043D23+ CGGATGAAGAGTCAAAAGCCAAGATTGAGGCTCTGAAG
____________________________________________________________
consensus GTAGCTAAGGCAGGTAAGACACCGGATGAAGAGTCAAAAGCCAAGATTGAGGCTCTGAAG
. : . : . : . : . : . :
rJMSF039F15+ CAGGAAATAAAGCAGAGCATGGCAGAGGCTATGAATTTCTCTGAATTAAAAGAGAAGCAT
rJMFF022O12+ CAGGAAATAAAGCAGAGCATGGCAGAGGCTATGAATTTCTCTGAATTAAAAGAGAAGCAT
rJMSF042J09+ CAGGAAATAAAGCAGAGCATGGCAGAGGCTATGAATTTCTCTGAATTAAAAGAGAAGCAT
rJMFF043P20+ CAGGAAATAAAGCAGAGCATGGCAGAGGCTATGAATTTCTCTGAATTAAAAGAGAAGCAT
rJMFF043D23+ CAGGAAATAAAGCAGAGCATGGCAGAGGCTATGAATTTCTCTGAATTAAAAGAGAAGCAT
____________________________________________________________
consensus CAGGAAATAAAGCAGAGCATGGCAGAGGCTATGAATTTCTCTGAATTAAAAGAGAAGCAT
. : . : . : . : . : . :
rJMSF039F15+ GAGAAGCTGAAATCCGAGGTTTCAGAATCCAACAAAATGTCTGGAGGTTCAGATGGGAAT
rJMFF022O12+ GAGAAGCTGAAATCCGAGGTTTCAGAATCCAACAAAATGTCTGGAGGTTCAGATGGGAAT
rJMSF042J09+ GAGAAGCTGAAATCCGAGGTTTCAGAATCCAACAAAATGTCTGGAGGTTCAGATGGGAAT
rJMFF043P20+ GAGAAGCTGAAATCCGAGGTTTCAGAATCCAACAAAATGTCTGGAGGTTCAGATGGGAAT
rJMFF043D23+ GAGAAGCTGAAATCCGAGGTTTCAGAATCCAACAAAATGTCTGGAGGTTCAGATGGGAAT
____________________________________________________________
consensus GAGAAGCTGAAATCCGAGGTTTCAGAATCCAACAAAATGTCTGGAGGTTCAGATGGGAAT
. : . : . : . : . : . :
rJMSF039F15+ TTGCTTAAAGGGGATGGTCAATATGATAAATTGATGCCAGACGGTTCAAATATTGAAGTT
rJMFF022O12+ TTGCTTAAAGGGGATGGTCAATATGATAAATTGATGCCAGACGGTTCAAATATTGAAGTT
rJMSF042J09+ TTGCTTAAAGGGGATGGTCAATATGATAAATTGATGCCAGACGGTTCAAATATTGAAGTT
rJMFF043P20+ TTGCTTAAAGGGGATGGTCAATATGATAAATTGATGCCAGACGGTTCAAATATTGAAGTT
rJMFF043D23+ TTGCTTAAAGGGGATGGTCAATATGATAAATTGATGCCAGACGGTTCAAATATTGAAGTT
____________________________________________________________
consensus TTGCTTAAAGGGGATGGTCAATATGATAAATTGATGCCAGACGGTTCAAATATTGAAGTT
. : . : . : . : . : . :
rJMSF039F15+ AATTTTGAACCAAACCGTAGCTTTGCCTGATATCTCACTTGGCACCAATTCCGATCAGTT
rJMFF022O12+ AATTTTGAACCAAACCGTAGCTTTGCCTGATATCTCACTTGGCACCAATTCCGATCAGTT
rJMSF042J09+ AATTTTGAACCAAACCGTAGCTTTGCCTGATATCTCACTTGGCACCAATTCCGATCAGTT
rJMFF043P20+ AATTTTGAACCAAACCGTAGCTTTGCCTGATATCTCACTTGGCACCAATTCCGATCAGTT
rJMFF043D23+ AATTTTGAACCAAACCGTAGCTTTGCCTGATATCTCACTTGGCACCAATTCCGATCAGTT
____________________________________________________________
consensus AATTTTGAACCAAACCGTAGCTTTGCCTGATATCTCACTTGGCACCAATTCCGATCAGTT
. : . : . : . : . : . :
rJMSF039F15+ GCTGTGGTGTTGTGTGAAGACAACCAACTTGAAGGATGAATCTGCTGAAACTACATCAGC
rJMFF022O12+ GCTGTGGTGTTGTGTGAAGACAACCAACTTGAAGGATGAATCTGCTGAAACTACATCAGC
rJMSF042J09+ GCTGTGGTGTTGTGTGAAGACAACCAACTTGAAGGATGAATCTGCTGAAACTACATCAGC
rJMFF043P20+ GCTGTGGTGTTGTGTGAAGACAACCAACTTGAAGGATGAATCTGCTGAAACTACATCAGC
rJMFF043D23+ GCTGTGGTGTTGTGTGAAGACAACCAACTTGAAGGATGAATCTGCTGAAACTACATCAGC
____________________________________________________________
consensus GCTGTGGTGTTGTGTGAAGACAACCAACTTGAAGGATGAATCTGCTGAAACTACATCAGC
. : . : . : . : . : . :
rJMSF039F15+ ATGCGAAATATCTCTACTCCTTTTCAAACTGCGGTTCCTTGTCAACTTCTACTGTTGTCT
rJMFF022O12+ ATGCGAAATATCTCTACTCCTTTTCAAACTGCGGTTCCTTGTCAACTTCTACTGTTGTCT
rJMSF042J09+ ATGCGAAATATCTCTACTCCTTTTCAAACTGCGGTTCCTTGTCAACTTCTACTGTTGTCT
rJMFF043P20+ ATGCGAAATATCTCTACTCCTTTTCAAACTGCGGTTCCTTGTCAACTTCTACTGTTGTCT
rJMFF043D23+ ATGCGAAATATCTCTACTCCTTTTCAAACTGCGGTTCCTTGTCAACTTCTACTGTTGTCT
____________________________________________________________
consensus ATGCGAAATATCTCTACTCCTTTTCAAACTGCGGTTCCTTGTCAACTTCTACTGTTGTCT
. : . : . : . : . : . :
rJMSF039F15+ TCTTAATTAGTCATTGAGGTTTTCCTTTTCTGGGTTAGGAACACTATGCCTGTTGCTTGA
rJMFF022O12+ TCTTAATTAGTCATTGAGGTTTTCCTTTTCTGGGTTAGGAACACTATGCCTGTTGCTTGA
rJMSF042J09+ TCTTAATTAGTCATTGAGGTTTTCCTTTTCTGGGTTAGGAACACTATGCCTGTTGCTTGA
rJMFF043P20+ TCTTAATTAGTCATTGAGGTTTTCCTTTTCTGGGTTAGGAACACTATGCCTGTTGCTTGA
rJMFF043D23+ TCTTAATTAGTCATTGAGGTTTTCCTTTTCTGGGTTAGGAACACTATGCCTGTTGCTTGA
____________________________________________________________
consensus TCTTAATTAGTCATTGAGGTTTTCCTTTTCTGGGTTAGGAACACTATGCCTGTTGCTTGA
. : . : . : . : . : . :
rJMSF039F15+ TTATGAGTTTATTCGTAGTGGTATTTATTTCAAGGTTTTGTCAGGAAACTTTTATATTCT
rJMFF022O12+ TTATGAGTTTATTCGTAGTGGTATTTATTTCAAGGTTTTGTCAGGAAACTTTTATATTCT
rJMSF042J09+ TTATGAGTTTATTCGTAGTGGTATTTATTTCAAGGTTTTGTCAGGAAACTTTTATATTCT
rJMFF043P20+ TTATGAGTTTATTCGTAGTGGTATTTATTTCAAGGTTTTGTCAGGAAACTTTTATATTCT
rJMFF043D23+ TTATGAGTTTATTCGTAGTGGTATTTATTTCAAGGTTTTGTCAGGAAACTTTTATATTCT
____________________________________________________________
consensus TTATGAGTTTATTCGTAGTGGTATTTATTTCAAGGTTTTGTCAGGAAACTTTTATATTCT
. : . : . : . : . : . :
rJMSF039F15+ GGTTGGCTCTTTATAGCAGCATTGCATTGTATTACATAC
rJMFF022O12+ GGTTGGCTCTTTATAGCAGCATTGCATTGTATTACATACAGAATATTGGCTGAAAGGAAA
rJMSF042J09+ GGTTGGCTCTTTATAGCAGCATTGCATTGTATTACATACAGAATATTGGCCGAAAGGAAA
rJMFF043P20+ GGTTGGCTCTTTATAGCAGCATTGCATTGTATTACATACAGAATATTGGCCGAAAGGAAA
rJMFF043D23+ GGTTGGCTCTTTATAGCAGCATTGCATTGTATTACATACAGAATATTGGCCGAAAGGAAA
____________________________________________________________
consensus GGTTGGCTCTTTATAGCAGCATTGCATTGTATTACATACAGAATATTGGCCGAAAGGAAA
. : . : . : . : . : . :
rJMFF022O12+ CGCAAAATAA
rJMSF042J09+ CGCAAAATAA
rJMFF043P20+ CGCAAAATAAATAGTATGCTTCAAGAGT
rJMFF043D23+ CGCAAAATAAATAGTATGCTTCAAGAGTACGATAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus CGCAAAATAAATAGTATGCTTCAAGAGTACGATAAAAAAAAAAAAAAAACTCTCCAGGGT