| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003C12 | Sequence | 612 | 013801 (10) | dbj|BAG55005.1| | 2e-97 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] | |||||
| JMFF004A11 | Sequence | 381 | 013801 (10) | dbj|BAG55005.1| | 1e-44 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] | |||||
| JMFF035I11 | Sequence | 491 | 013801 (10) | dbj|BAG55005.1| | 2e-42 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] | 693 | 013801 (10) | dbj|BAG55005.1| | 8e-114 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] |
| JMFF042O19 | Sequence | 652 | 013801 (10) | dbj|BAG55005.1| | 8e-92 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] | 613 | 013801 (10) | dbj|BAG55005.1| | 2e-93 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] |
| JMFN016L03 | Sequence | 613 | 013801 (10) | dbj|BAG55005.1| | 7e-100 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] | |||||
| JMFN033F03 | Sequence | 635 | 013801 (10) | dbj|BAG55005.1| | 5e-91 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] | |||||
| JMSF030F03 | Sequence | 601 | 013801 (10) | dbj|BAG55005.1| | 2e-82 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] | 634 | 013801 (10) | dbj|BAG55005.1| | 3e-117 | auxin-responsive Aux/IAA gene family member [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
JMFF035I11- CTCTTCTCTTCTTATCTCCCAACTCTCTCTCTCTCTCCTCCTCCT
JMSF030F03- AACTCTCTCTCTCTCTCCTCCTCCT
JMFN033F03- AACTCTCTCTCTCTCTCCTCCTCCT
JMFF042O19- TCTCTTCTTATCTCCCAACTCTCTCTCTCTCTCCTCCTCCT
____________________________________________________________
consensus CTCTTCTCTTCTTATCTCCCAACTCTCTCTCTCTCTCCTCCTCCT
. : . : . : . : . : . :
JMFF035I11- CCTACTCTCTCTCTAGACAAAAACATCATACAAAATTCAGAAAAAAAGCCCCAAAGTTCT
JMSF030F03- CCTACTCTCTCTCTAGACAAAAACATCATACAAAATTCAGAAAAAAAGCCCCAAAGTTCT
JMFN033F03- CCTACTCTCTCTCTAGACAAAAACATCATACAAAATTCAGAAAAAAAGCCCCAAAGTTCT
JMFF042O19- CCTACTCTCTCTCTAGACAAAAACATCATACAAAATTCAGAAAAAAAGCCCCAAAGTTCT
JMFN016L03- TACAAAATTCAGAAAAAAAGCCCCAAAGTTCT
____________________________________________________________
consensus CCTACTCTCTCTCTAGACAAAAACATCATACAAAATTCAGAAAAAAAGCCCCAAAGTTCT
. : . : . : . : . : . :
JMFF035I11- TAAAGGATCGTGTTTTGCGAGATTTTGGACGTAAGCTTTGTGCAAAAAGAAAAATGTTGA
JMSF030F03- TAAAGGATCGTGTTTTGCGAGATTTTGGACGTAAGCTTTGTGCAAAAAGAAAAATGTTGA
JMFN033F03- TAAAGGATCGTGTTTTGCGAGATTTTGGACGTAAGCTTTGTGCAAAAAGAAAAATGTTGA
JMFF042O19- TAAAGGATCGTGTTTTGCGAGATTTTGGACGTAAGCTTTGTGCAAAAAGAAAAATGTTGA
JMFN016L03- TAAAGGATCGTGTTTTGCGAGATTTTGGACGTAAGCTTTGTGCAAAAAGAAAAATGTTGA
____________________________________________________________
consensus TAAAGGATCGTGTTTTGCGAGATTTTGGACGTAAGCTTTGTGCAAAAAGAAAAATGTTGA
. : . : . : . : . : . :
JMFF035I11- ATTTTGAAGCGACGGAGCTCCGGCTAGGATTGCCTGGCGGCGGTGGT-GAAATGACGGCG
JMSF030F03- ATTTTGAAGCGACGGAGCTCCGGCTAGGATTGCCTGGCGGCGGTGGTGGAAATGACGGCG
JMFN033F03- ATTTTGAAGCGACGGAGCTCCGGCTAGGATTGCCTGGCGGCGGTGGTGGAAATGACGGCG
JMFF042O19- ATTTTGAAGCGACGGAGCTCCGGCTAGGATTGCCTGGCGGCGGTGGTGGAAATGACGGCG
JMFN016L03- ATTTTGAAGCGACGGAGCTCCGGCTAGGATTGCCTGGCGGCGGTGGTGGAAATGACGGCG
____________________________________________________________
consensus ATTTTGAAGCGACGGAGCTCCGGCTAGGATTGCCTGGCGGCGGTGGTGGAAATGACGGCG
. : . : . : . : . : . :
JMFF035I11- AAGCGGTGAAGAGCAACGGGAAGAGAGCTTTCTCCGACACCGTTGACTTGAAGCTTAAGC
JMSF030F03- AAGCGGTGAAGAGCAACGGGAAGAGAGCTTTCTCCGACACCGTTGACTTGAAGCTTAAGC
JMFN033F03- AAGCGGTGAAGAGCAACGGGAAGAGAGCTTTCTCCGACACCGTTGACTTGAAGCTTAAGC
JMFF042O19- AAGCGGTGAAGAGCAACGGGAAGAGAGCTTTCTCCGACACCGTTGACTTGAAGCTTAAGC
JMFN016L03- AAGCGGTGAAGAGCAACGGGAAGAGAGCTTTCTCCGACACCGTTGACTTGAAGCTTAAGC
____________________________________________________________
consensus AAGCGGTGAAGAGCAACGGGAAGAGAGCTTTCTCCGACACCGTTGACTTGAAGCTTAAGC
. : . : . : . : . : . :
JMFF035I11- TATCTTCGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
JMSF030F03- TATCTTCGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
JMFN033F03- TATCTTCGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
JMFF042O19- TATCTTCGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
JMFN016L03- TATCTTCGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
rJMSF030F03+ TCGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
rJMFF035I11+ CGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
____________________________________________________________
consensus TATCTTCGAAGGAATCCAACGTTGATCAAGTTGAGAACTTGAAAGACAACAATAATAATG
. : . : . : . : . : . :
JMFF035I11- TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
JMSF030F03- TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
JMFN033F03- TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
JMFF042O19- TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
JMFN016L03- TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
rJMSF030F03+ TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
rJMFF003C12+ TCCTAGTGATTCAANTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
rJMFF035I11+ TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
rJMFF042O19+ AAGTAGTGGGTTGGC
____________________________________________________________
consensus TTGTCACAAGTCCTAGTGATTCAACTAAGCCACCAGCCAAAGCACAAGTAGTGGGTTGGC
. : . : . : . : . : . :
JMFF035I11- CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
JMSF030F03- CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
JMFN033F03- CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
JMFF042O19- CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
JMFN016L03- CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
rJMSF030F03+ CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
rJMFF003C12+ CACCGGTGAGATCATACCGGAAAAACATCCTGANTGGACAGAAGGCGGCCGGCGAGAGCT
rJMFF035I11+ CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
rJMFF042O19+ CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
____________________________________________________________
consensus CACCGGTGAGATCATACCGGAAAAACATCCTGAGTGGACAGAAGGCGGCCGGCGAGAGCT
. : . : . : . : . : . :
JMFF035I11- CCGGCGGTGGTGCCGCCCTAGTCAAAG
JMSF030F03- CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
JMFN033F03- CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
JMFF042O19- CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
JMFN016L03- CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
rJMSF030F03+ CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
rJMFF003C12+ CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
rJMFF035I11+ CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
rJMFF042O19+ CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
____________________________________________________________
consensus CCGGCGGTGGTGCCGCCCTAGTCAAAGTTAGCGTTGACGGTGCGCCCTACTTGCGTAAAG
. : . : . : . : . : . :
JMSF030F03- TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTCTGAAGCTTTGGGCAAAATGTTCA
JMFN033F03- TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTCTGAAGCTTTGGGCAAAATGTTCA
JMFF042O19- TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTCTGAAGCTTTGGGCAAAATGTTCA
JMFN016L03- TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTCTGAAGCTTTGGGCAAAATGTTCA
rJMSF030F03+ TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTNTGAAGCTTTGGGCAAAATGTTCA
rJMFF003C12+ TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTNTGAAGCTTTGGGCAAAATGTTCA
rJMFF035I11+ TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTTTGAAGCTTTGGGCAAAATGTTCA
rJMFF042O19+ TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTCTGAAGCTTTGGGCAAAATGTTCA
____________________________________________________________
consensus TGGACTTAAAGATGTACAAAAGCTACCATGAACTTTCTGAAGCTTTGGGCAAAATGTTCA
. : . : . : . : . : . :
JMSF030F03- GCTCTTTCACCATTGGGAATTGTGGGACTCATGGA
JMFN033F03- GCTCTTTCACCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
JMFF042O19- GCTCTTTCACCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
JMFN016L03- GCTCTTTCACCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
rJMSF030F03+ GCTCTTTCACCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
rJMFF003C12+ GCTNTTTCNCCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
rJMFF035I11+ GCTNTTTCACCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
rJMFF004A11+ TTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
rJMFF042O19+ GCTCTTTCACCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
____________________________________________________________
consensus GCTCTTTCACCATTGGGAATTGTGGGACTCATGGATTTAAGGATTTCATGAACGAGAGCA
. : . : . : . : . : . :
JMFN033F03- AATTGATA
JMFF042O19- AATTGATAGAT
JMFN016L03- AATTGATAGATCTATTAAATGGTTCAGACTATGTTCCAACT
rJMSF030F03+ AATTGATAGATCTATTAAATGGTTCAGACTATGTTCCAACTTATGAAGATAAAGATGGAG
rJMFF003C12+ AATTGATAGATNTATTAAATGGTTCAGNCTATGTTCCAACTTATGAAGATAAAGATGGAG
rJMFF035I11+ AATTGATAGATNTATTAAATGGTTCAGACTATGTTCCAACTTATGAAGATAAAGATGGAG
rJMFF004A11+ AATTGATAGATNTATTAAATGGTTCAGACTATGTTCCAACTTATGAAGATAAAGATGGAG
rJMFF042O19+ AATTGATAGATCTATTAAATGGTTCAGACTATGTTCCAACTTATGAAGATAAAGATGGAG
____________________________________________________________
consensus AATTGATAGATCTATTAAATGGTTCAGACTATGTTCCAACTTATGAAGATAAAGATGGAG
. : . : . : . : . : . :
rJMSF030F03+ ATTGGATGCTTGTCGGTGATGTTCCATGGAACATGTTTGTTGATTCATGCAAGCGCTTGC
rJMFF003C12+ ATTGGATGCTTGTCGGTGATGTTCCATGGAACATGTTTGTTGATTCATGCAAGCGCTTGC
rJMFF035I11+ ATTGGATGCTTGTCGGTGATGTTCCATGGAACATGTTTGTTGATTCATGCAAGCGCTTGC
rJMFF004A11+ ATTGGATGCTTGTCGGTGATGTTCCATGGAACATGTTTGTTGATTCATGCAAGCGCTTGC
rJMFF042O19+ ATTGGATGCTTGTCGGTGATGTTCCATGGAACATGTTTGTTGATTCATGCAAGCGCTTGC
____________________________________________________________
consensus ATTGGATGCTTGTCGGTGATGTTCCATGGAACATGTTTGTTGATTCATGCAAGCGCTTGC
. : . : . : . : . : . :
rJMSF030F03+ GAATAATGAAAGGATCAGAAGCCNTTGGACTAGCNCCAAGGGCNGTAGAGAAATGCAAGA
rJMFF003C12+ GAATAATGAAAGGATCAGAAGCCATTGGNCTAGCACCAAGGGCAGTAGAGAAATGCAAGA
rJMFF035I11+ GAATAATGAAAGGATCAGAAGCCATTGGACT---ACCAAGGGCAGTAGAGAAATGCAAGA
rJMFF004A11+ GAATAATGAAAGGATCAGAAGCCATTGGACT---ACCAAGGGCAGTAGAGAAATGCAAGA
rJMFF042O19+ GAATAATGAAAGGATCAGAAGCCATTGGACTAGCACCAAGGGCAGTAGAGAAATGCAAGA
____________________________________________________________
consensus GAATAATGAAAGGATCAGAAGCCATTGGACTAGCACCAAGGGCAGTAGAGAAATGCAAGA
. : . : . : . : . : . :
rJMSF030F03+ ACNGAAGTTGAATTGCTATTTGTAATTGCATTTTTTTCCCTTTTTTTTTTAAATCTGTTT
rJMFF003C12+ ACAGAAGTTGAATTGCTATTTGTAATTGCATTTTTTTCCCTTTTTTTTTTAAATCTGTTT
rJMFF035I11+ ACAGAAGTTGAATTGCTATTTGTAATTGCATTTTTTTCCCTTTTTTTTTTAAATCTGTTT
rJMFF004A11+ ACAGAAGTTGAATTGCTATTTGTAATTGCATTTTTTTCCCTTTTTTTTTTAAATCTGTTT
rJMFF042O19+ ACAGAAGTTGAATTGCTATTTGTAATTGCATTTTTTTCCC-TTTTTTTTTAAATCTGTTT
____________________________________________________________
consensus ACAGAAGTTGAATTGCTATTTGTAATTGCATTTTTTTCCCTTTTTTTTTTAAATCTGTTT
. : . : . : . : . : . :
rJMSF030F03+ TTTGATTGTAATGATCTCAACTATGAGCATCAACCTTAA
rJMFF003C12+ TTTGATTGTAATGATCTCAACTATGAGCATCAACCTTAANTGTGTTTGTAATTATGTTTT
rJMFF035I11+ TTTGATTGTAATGATCTCAACTATGAGCATCAACCTTAATTGTGTTTGTAATTATGTTTA
rJMFF004A11+ TTTGATTGTAATGATCTCAACTATGAGCATCAACCTTAATTGTGTTTGTAATTATGTTTA
rJMFF042O19+ TTTGATTGTAATGATCTCAACTATGAGCATCAACCTTAATTGTGTTTGTAATTATGTTTT
____________________________________________________________
consensus TTTGATTGTAATGATCTCAACTATGAGCATCAACCTTAATTGTGTTTGTAATTATGTTTT
. : . : . : . : . : . :
rJMFF003C12+ AAA
rJMFF035I11+ AAATATATATGTATACATATCTATTACATAAAATA
rJMFF004A11+ AAATATATATGTATACATATCTATTACATAAAATA
rJMFF042O19+ AAA-ATATATGTATACATATCTATTACATAAAATATGAGATGAGAGGTCTGCATTAAAAG
____________________________________________________________
consensus AAATATATATGTATACATATCTATTACATAAAATATGAGATGAGAGGTCTGCATTAAAAG