| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012K04 | Sequence | 513 | 000032 (14) | ref|XP_009772632.1| | 3e-68 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 775 | 013800 (3) | ref|XP_009627036.1| | 4e-66 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
| JMFF041L10 | Sequence | 658 | 000032 (14) | ref|XP_009772632.1| | 7e-105 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 594 | 013800 (3) | ref|XP_009627036.1| | 2e-64 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi |
| JMFF042I09 | Sequence | 659 | 000032 (14) | ref|XP_009772632.1| | 6e-104 | PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri | 607 | 013800 (3) | gb|ABQ66371.1| | 3e-24 | THIC, partial [Nicotiana benthamiana] |
This contig is upended
. : . : . : . : . : . :
rJMFF012K04+ TAAGCAAGGCAA
____________________________________________________________
consensus TAAGCAAGGCAA
. : . : . : . : . : . :
rJMFF041L10+ TTTGAGTTCCGATGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGT
rJMFF012K04+ GATTTGAGTTCCGATGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGT
____________________________________________________________
consensus GATTTGAGTTCCGATGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGT
. : . : . : . : . : . :
rJMFF041L10+ CCTTCCATGATGAAACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGT
rJMFF012K04+ CCTTCCATGATGAAACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGT
____________________________________________________________
consensus CCTTCCATGATGAAACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGT
. : . : . : . : . : . :
rJMFF041L10+ GTGGGCCTAAATTCTGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATC
rJMFF012K04+ GTGGGCCTAAATTCTGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATC
rJMFF042I09+ GAGGATC
____________________________________________________________
consensus GTGGGCCTAAATTCTGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATC
. : . : . : . : . : . :
rJMFF041L10+ ACGGGTATGGAAGTGCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGT
rJMFF012K04+ ACGGGTATGGAAGTGCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGT
rJMFF042I09+ ACGGGTATGGAAGTGCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGT
____________________________________________________________
consensus ACGGGTATGGAAGTGCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGT
. : . : . : . : . : . :
rJMFF041L10+ TCCAAGCTGCAAAGAAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCT
rJMFF012K04+ TCCAAGCTGCAAAGAAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCT
rJMFF042I09+ TCCAAGCTGCAAAGAAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCT
____________________________________________________________
consensus TCCAAGCTGCAAAGAAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCT
. : . : . : . : . : . :
rJMFF041L10+ ATCTGCCAACAAATTACGTAAACTCTTTGAAGATCTAAAGGATGATAAGGACACATGAAG
rJMFF012K04+ ATCTGCCAACAAATTACGTAAACTCTTTGAAGATCTAAAGGATGATAAGGACACATGAAG
rJMFF042I09+ ATCTGCCAACAAATTACGTAAACTCTTTGAAGATCTAAAGGATGATAAGGACACATGAAG
____________________________________________________________
consensus ATCTGCCAACAAATTACGTAAACTCTTTGAAGATCTAAAGGATGATAAGGACACATGAAG
. : . : . : . : . : . :
rJMFF041L10+ AACTAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAA
rJMFF012K04+ AACTAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAA
rJMFF042I09+ AACTAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAA
____________________________________________________________
consensus AACTAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAA
. : . : . : . : . : . :
rJMFF041L10+ TCTCAAGATCTTCATCCCCCCATCATGATAGG
rJMFF012K04+ TCTCAAGATCTTCATCCCCCCATCATGATAGGGGTGTCTGTATCTGCTCCAGCCCTGGCT
rJMFF042I09+ TCTCAAGATCTTCATCCCCCCATCATGATAGGGGTGTCTGTATCTGCTCCAGCCCTGGCT
____________________________________________________________
consensus TCTCAAGATCTTCATCCCCCCATCATGATAGGGGTGTCTGTATCTGCTCCAGCCCTGGCT
. : . : . : . : . : . :
rJMFF012K04+ CCCTCGGCCAGGATGCTGGCTGAAACAGGCTGAGAAAGTCCCTTCGAACCTGAACAGGAT
rJMFF042I09+ CCCTCGGCCAGGATGCTGGCTGAAACAGGCTGAGAAAGTCCCTTCGAACCTGAACAGGAT
____________________________________________________________
consensus CCCTCGGCCAGGATGCTGGCTGAAACAGGCTGAGAAAGTCCCTTCGAACCTGAACAGGAT
. : . : . : . : . : . :
rJMFF012K04+ AATGCCTGCGTAGGGAGCGTGCATTTCCTTTTCTCTTGTTTTCTATGTTTGCACAGGGAT
rJMFF042I09+ AATGCCTGCGTAGGGAGCGTGCATTTCCTTTTCTCTTGTTTTCTATGTTTGCACAGGGAT
____________________________________________________________
consensus AATGCCTGCGTAGGGAGCGTGCATTTCCTTTTCTCTTGTTTTCTATGTTTGCACAGGGAT
. : . : . : . : . : . :
rJMFF012K04+ GGTGGAGAATTACCACAAGCCCTGGCTGGCTGGCTGGCTTGTGTTTGGCTGCACCCCTGT
rJMFF042I09+ GGTGGAGAATTACCACAAGCCCTGGCTGGCTGGCTGGCTTGTGTTTGGCTGCACCCCTGT
____________________________________________________________
consensus GGTGGAGAATTACCACAAGCCCTGGCTGGCTGGCTGGCTTGTGTTTGGCTGCACCCCTGT
. : . : . : . : . : . :
rJMFF012K04+ CTGTCTATTGTCTTCTCTCTCTACTTTACTGTATATTGTCATATCTGTTCATCGAGGTCG
rJMFF042I09+ CTGTCTATTGTCTTCTCTCTCTACTTTACTGTATATTGTCATATCTGTTCATCGAGGTCG
____________________________________________________________
consensus CTGTCTATTGTCTTCTCTCTCTACTTTACTGTATATTGTCATATCTGTTCATCGAGGTCG
. : . : . : . : . : . :
rJMFF012K04+ GGAGCAGTTAGCACCGCCATTTTCTTATCTGCCCAGTAGTAAT
rJMFF042I09+ GGAGCAGTTAGCACCGCCATTTTCTTATCTGCCCAGTAGTAATAACTTACATTGTTTACC
____________________________________________________________
consensus GGAGCAGTTAGCACCGCCATTTTCTTATCTGCCCAGTAGTAATAACTTACATTGTTTACC