| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006E10 | Sequence | 471 | 013117 (7) | 825 | 013799 (5) | ref|XP_009619492.1| | 1e-128 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is | |||
| JMFF042H08 | Sequence | 629 | 013117 (7) | ref|XP_006346158.1| | 5e-11 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic-li | 621 | 013799 (5) | ref|XP_009619494.1| | 5e-77 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is |
| JMSF015C17 | Sequence | 446 | 013117 (7) | 781 | 013799 (5) | ref|XP_009619492.1| | 2e-131 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is | |||
| JMSF032K12 | Sequence | 701 | 013117 (7) | ref|XP_006346158.1| | 3e-19 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic-li | 764 | 013799 (5) | ref|XP_009619492.1| | 9e-130 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is |
| JMSF036J16 | Sequence | 647 | 013117 (7) | ref|XP_006346158.1| | 1e-16 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic-li | 748 | 013799 (5) | ref|XP_009619492.1| | 1e-125 | PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic is |
This contig is upended
. : . : . : . : . : . :
rJMSF032K12+ ACTACTGGAAAGTTCTATGGTGGGGGATATAGCTCACAAACCT
rJMSF036J16+ GGGGATATAGCTCACAAACCT
____________________________________________________________
consensus ACTACTGGAAAGTTCTATGGTGGGGGATATAGCTCACAAACCT
. : . : . : . : . : . :
rJMSF032K12+ GCATACTTTGTACCTGATTCAATGTCAGTTTGGAATCTCCTCAGAGAATTCCGCATTAGG
rJMSF036J16+ GCATACTTTGTACCTGATTCAATGTCAGTTTGGAATCTCCTCAGAGAATTCCGCATTAGG
____________________________________________________________
consensus GCATACTTTGTACCTGATTCAATGTCAGTTTGGAATCTCCTCAGAGAATTCCGCATTAGG
. : . : . : . : . : . :
rJMSF032K12+ AAAGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACTATTGGAATTGTAACCCTT
rJMSF036J16+ AAAGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACTATTGGAATTGTAACCCTT
____________________________________________________________
consensus AAAGTACACATGGCTGTTGTTCTTAATGAATATGGAGGAACTATTGGAATTGTAACCCTT
. : . : . : . : . : . :
rJMSF032K12+ GAAGATGTGGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGATTCCAAAGAAGAG
rJMSF036J16+ GAAGATGTGGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGATTCCAAAGAAGAG
rJMSF015C17+ GAAGAG
rJMFF006E10+ GAAGAG
rJMFF042H08+ GAAAATGATTCCAAAGAAGAG
____________________________________________________________
consensus GAAGATGTGGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGATTCCAAAGAAGAG
. : . : . : . : . : . :
rJMSF032K12+ ATCCAGAAGAAAACTGGCTACATTGTTCTCAGGGCTGAGGGAATCTTTGATGTGGATGCT
rJMSF036J16+ ATCCAGAAGAAAACTGGCTACATTGTTCTCAGGGCTGAGGGAATCTTTGATGTGGATGCT
rJMSF015C17+ ATCCAGAAGAAAACTGGCTACATTGTTCTCAGGGCTGAGGGAATCTTTGATGTGGATGCT
rJMFF006E10+ ATCCAGAAGAAAACTGGCTACATTGTTCTCAGGGCTGAGGGAATCTTTGATGTGGATGCT
rJMFF042H08+ ATCCAGAAGAAAACTGGCTACATTGTTCTCAGGGCTGAGGGAATCTNTGATGTGGATGCT
____________________________________________________________
consensus ATCCAGAAGAAAACTGGCTACATTGTTCTCAGGGCTGAGGGAATCTTTGATGTGGATGCT
. : . : . : . : . : . :
rJMSF032K12+ AATACATCCATTGATCAGCTATCTGATGAACTCGAGATTAAAATGCCCGAGGATCATCAA
rJMSF036J16+ AATACATCCATTGATCAGCTATCTGATGAACTCGAGATTAAAATGCCCGAGGATCATCAA
rJMSF015C17+ AATACATCCATTGATCAGCTATCTGATGAACTCGAGATTAAAATGCCCGAGGATCATCAA
rJMFF006E10+ AATACATCCATTGATCAGCTATCTGATGAACTCGAGATTAAAATGCCCGAGGATCATCAA
rJMFF042H08+ AATACATCCATTGATCAGCTATCTGATGAACTCGAGATTAAAATGCCCGAGGATCATCAA
____________________________________________________________
consensus AATACATCCATTGATCAGCTATCTGATGAACTCGAGATTAAAATGCCCGAGGATCATCAA
. : . : . : . : . : . :
rJMSF032K12+ TACGAAACAGTTTCTGGTTTTGTTTGTGAAGCATTTGGTTACATACCTAGGACGGGTGAG
rJMSF036J16+ TACGAAACAGTTTCTGGTTTTGTTTGTGAAGCATTTGGTTACATACCTAGGACGGGTGAG
rJMSF015C17+ TACGAAACAGTTTCTGGTTTTGTTTGTGAAGCATTTGGTTACATACCTAGGACGGGTGAG
rJMFF006E10+ TACGAAACAGTTTCTGGTTTTGTTTGTGAAGCATTTGGTTACATACCTAGGACGGGTGAG
rJMFF042H08+ TACGAAACAGTTTCTGGTTTTGTTTGTGAAGCATTTGGTTACATACCTAGGACGGGTGAG
____________________________________________________________
consensus TACGAAACAGTTTCTGGTTTTGTTTGTGAAGCATTTGGTTACATACCTAGGACGGGTGAG
. : . : . : . : . : . :
rJMSF032K12+ AGCATAAAAGTGATACTTGAAAAGTCAAATCAAGAAGAACACAATGACTATTCTGGAAAG
rJMSF036J16+ AGCATAAAAGTGATACTTGAAAAGTCAAATCAAGAAGAACACAATGACTATTCTGGAAAG
rJMSF015C17+ AGCATAAAAGTGATACTTGAAAAGTCAAATCAAGAAGAACACAATGACTATTCTGGAAAG
rJMFF006E10+ AGCATAAAAGTGATACTTGAAAAGTCAAATCAAGAAGAACACAATGACTATTCTGGAAAG
rJMFF042H08+ AGCATAAAAGTGATACTTGAAAAGTCAAATCAAGAAGAACACAATGACTATTCTGGAAAG
____________________________________________________________
consensus AGCATAAAAGTGATACTTGAAAAGTCAAATCAAGAAGAACACAATGACTATTCTGGAAAG
. : . : . : . : . : . :
rJMSF032K12+ GAATCTGATCAAGGGGATAAAAATGAAAAGAATCAAATTTATAAGCTTGAGATATTAGCA
rJMSF036J16+ GAATCTGATCAAGGGGATAAAAATGAAAAGAATCAAATTTATAAGCTTGAGATATTAGCA
rJMSF015C17+ GAATCTGATCAAGGGGATAAAAATGAAAAGAATCAAATTTATAAGCTTGAGATATTAGCA
rJMFF006E10+ GAATCTGATCAAGGGGATAAAAATGAAAAGAATCAAATTTATAAGCTTGAGATATTAGCA
rJMFF042H08+ GAATCTGATCAAGGGGATAAAAATGAAAAGAATCAAATTTATAAGCTTGAGATATTAGCA
____________________________________________________________
consensus GAATCTGATCAAGGGGATAAAAATGAAAAGAATCAAATTTATAAGCTTGAGATATTAGCA
. : . : . : . : . : . :
rJMSF032K12+ GGAAATGCGAGAAAAGTGAGTGCGGTTCGATTTGAACGGATCAACCACGATGATGCAGAA
rJMSF036J16+ GGAAATGCGAGAAAAGTGAGTGCGGTTCGATTTGAACGGATCAACCACGATGATGCAGAA
rJMSF015C17+ GGAAATGCGAGAAAAGTGAGTGCGGTTCGATTTGAACGGATCAACCACGATGATGCAGAA
rJMFF006E10+ GGAAATGCGAGAAAAGTGAGTGCGGTTCGATTTGAACGGATCAACCACGATGATGCAGAA
rJMFF042H08+ GGAAATGCGAGAAAAGTGAGTGCGGTTCGATTTGAACGGATCAACCACGATGATGCAGAA
____________________________________________________________
consensus GGAAATGCGAGAAAAGTGAGTGCGGTTCGATTTGAACGGATCAACCACGATGATGCAGAA
. : . : . : . : . : . :
rJMSF032K12+ CTAGAGACCAAAGGTGTGAGACACTGGGCCCCAAAAATTATCGCAAAATGGAACAAGCAA
rJMSF036J16+ CTAGAGACCAAAGGTGTGAGACACTGGGCCCCAAAAATTATCGCAAAATGGAACAAGCAA
rJMSF015C17+ CTAGAGACCAAAGGTGTGAGACACTGGGCCCCAAAAATTATCGCAAAATGGAACAAGCAA
rJMFF006E10+ CTAGAGACCAAAGGTGTGAGACACTGGGCCCCAAAAATTATCGCAAAATGGAACAAGCAA
rJMFF042H08+ CTAGAGACCAAAGGTGTGAGACACTGGGCCCCAAAAATTATCGCAAAATGGAACAAGCAA
____________________________________________________________
consensus CTAGAGACCAAAGGTGTGAGACACTGGGCCCCAAAAATTATCGCAAAATGGAACAAGCAA
. : . : . : . : . : . :
rJMSF032K12+ GACGAATCAAACAATGAGGTCAGCTTTCATGGGAAAACAGATAACGGCAATTGCCTATCC
rJMSF036J16+ GACGAATCAAACAATGAGGTCAGCTTTCATGGGAAAACAGATAACGGCAATTGCCTATCC
rJMSF015C17+ GACGAATCAAACAATGAGGTCAGCTTTCATGGGAAAACAGATAACGGCAATTGCCTATCC
rJMFF006E10+ GACGAATCAAACAATGAGGTCAGCTTTCATGGGAAAACAGATAACGGCAATTGCCTATCC
rJMFF042H08+ GACGAATCAAACAATGAGGTCAGCTTTCATGGGAAAACAGATAACGGCAATTGCCTATCC
____________________________________________________________
consensus GACGAATCAAACAATGAGGTCAGCTTTCATGGGAAAACAGATAACGGCAATTGCCTATCC
. : . : . : . : . : . :
rJMSF032K12+ AACAATTTTGTAAAATCTGAACACAAAAACAGTCATGACCTTCATAACGTTGAATGAATG
rJMSF036J16+ AACAATTTTGTAAAATCTGAACACAAAAACAGTCATGACCTTCATAACGTTGAATGAATG
rJMSF015C17+ AACAATTTTGTAAAATCTGAACACAAAAACAGTCATGACCTTCATAACGTTGAATGAATG
rJMFF006E10+ AACAATTTTGTAAAATCTGAACACAAAAACAGTCATGACCTTCATAACGTTGAATGAATG
rJMFF042H08+ AACAATTTTGTAAAATCTGAACACAAAAACAGTCATGACCTTCATAACGTTGAATGAATG
____________________________________________________________
consensus AACAATTTTGTAAAATCTGAACACAAAAACAGTCATGACCTTCATAACGTTGAATGAATG
. : . : . : . : . : . :
rJMSF032K12+ G
rJMSF036J16+ GTC
rJMSF015C17+ GTC
rJMFF006E10+ GTCTACTTGTTACAACTATCTAATAATACTAAATTATCCGGGCAAAA
rJMFF042H08+ GTCTACTTGTTACAACTATCTAATAATACTAAATTATCCGGGCAAAATCCTTAATGAAAT
____________________________________________________________
consensus GTCTACTTGTTACAACTATCTAATAATACTAAATTATCCGGGCAAAATCCTTAATGAAAT