Contig 013798:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022A01Sequence383003381 (2)gb|ABN81351.1|3e-19auxin influx transport protein [Casuarina glauca]734013798 (3)ref|XP_011097813.1|1e-82PREDICTED: auxin transporter-like protein 3 [Sesamum indicum]
JMFF042G05Sequence659015297gb|AFK43565.1|7e-152unknown [Lotus japonicus]621013798 (3)ref|XP_010689616.1|1e-48PREDICTED: auxin transporter-like protein 3 [Beta vulgaris subsp. vulgaris]
JMFN033O21Sequence607013798 (3)ref|XP_009598314.1|2e-56PREDICTED: auxin transporter-like protein 3 [Nicotiana tomentosiformis] ref|XP_0

Alignment

This contig is upended


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rJMFF022A01+                             TTTAGAGACACTGCTGTCGTCCTCATGCTTATTCATCAGTT
                      ____________________________________________________________
consensus                                TTTAGAGACACTGCTGTCGTCCTCATGCTTATTCATCAGTT
 
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rJMFF022A01+          CATTACGTTTGGATTTGCTTGCACCCCTTTGTATTTTGTGTGGGAGAAGTTCATCGGAGT
                      ____________________________________________________________
consensus             CATTACGTTTGGATTTGCTTGCACCCCTTTGTATTTTGTGTGGGAGAAGTTCATCGGAGT
 
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JMFN033O21-              CAACACTAAGAGTCTGTTCAAGCGTGCATTGGCGAGGCTCCCAGTGGTGATACCAAT
rJMFF022A01+          ACACAACACTAAGAGTCTGTTCAAGCGTGCATTGGCGAGGCTCCCAGTGGTGATACCAAT
rJMFF042G05+                                                 GCTCCCAGTGGTGATACCAAT
                      ____________________________________________________________
consensus             ACACAACACTAAGAGTCTGTTCAAGCGTGCATTGGCGAGGCTCCCAGTGGTGATACCAAT
 
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JMFN033O21-           CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
rJMFF022A01+          CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
rJMFF042G05+          CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
                      ____________________________________________________________
consensus             CTGGTTTCTGGCAATTATTTTCCCATTTTTTGGTCCCATCAACTCCACCGTTGGATCCCT
 
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JMFN033O21-           TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
rJMFF022A01+          TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
rJMFF042G05+          TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
                      ____________________________________________________________
consensus             TCTTGTTAGCTTCACTGTCTACATTATCCCTGCTATGGCTCACATGATCACCTTTGCTTC
 
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JMFN033O21-           TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
rJMFF022A01+          TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
rJMFF042G05+          TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
                      ____________________________________________________________
consensus             TCCCGCTGCTAGAGAGAATGCTGTGGAGCAACCACCATCATCCATGGGAGGCTGGGCAGG
 
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JMFN033O21-           GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
rJMFF022A01+          GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
rJMFF042G05+          GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
                      ____________________________________________________________
consensus             GTTTTATTGTATGAACATATTTGTGGTGGCATGGGTTTTTATAGTTGGCTTTGGATTTGG
 
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JMFN033O21-           AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
rJMFF022A01+          AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
rJMFF042G05+          AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
                      ____________________________________________________________
consensus             AGGGTGGGCAAGCATGGTTAATTTTGTCCGCCAAATTAATACATTTGGTCTCTTTGCCAA
 
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JMFN033O21-           GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
rJMFF022A01+          GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
rJMFF042G05+          GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
                      ____________________________________________________________
consensus             GTGTTACCAATGTCCTAAGCACAAGGCTGCTTGAACGCTATACATATCTACATTGTTTGT
 
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JMFN033O21-           ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
rJMFF022A01+          ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
rJMFF042G05+          ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
                      ____________________________________________________________
consensus             ATTTTGATCTTAAATTGACTATATATTATGCGACCAACCCAAGTTGAAAGACGTACTAAG
 
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JMFN033O21-           ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
rJMFF022A01+          ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
rJMFF042G05+          ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
                      ____________________________________________________________
consensus             ATACATATTAGAGTGTGTAAAGTGCTTGTTATTTAATTTGTAACACTTTTAGTGTTTTTT
 
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JMFN033O21-           TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
rJMFF022A01+          TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
rJMFF042G05+          TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
                      ____________________________________________________________
consensus             TTATTCCATCTTTCTTGTAATAGTAACTATTTGTGTATGTGTTCCCATTGTCTCATCTAA
 
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JMFN033O21-           AAATGTAACT                                                  
rJMFF022A01+          AAATGTAACTCCATTTGTTTTTGTGGAGTTTTA                           
rJMFF042G05+          AAATGTAACTCCATTTGTTTTTGTGGAGTTTTATTAATGATATTCGTCGGTCTTGCATAT
                      ____________________________________________________________
consensus             AAATGTAACTCCATTTGTTTTTGTGGAGTTTTATTAATGATATTCGTCGGTCTTGCATAT