Contig 013789:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040M16Sequence541013789 (6)ref|XP_011101536.1|9e-46PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic552013789 (6)ref|XP_011101536.1|2e-36PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic
JMSF037M23Sequence576013789 (6)ref|XP_011101536.1|2e-44PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic529013789 (6)ref|XP_011101536.1|1e-44PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic
JMSF044H07Sequence577013789 (6)ref|XP_011101536.1|1e-45PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic531013789 (6)ref|XP_011101536.1|8e-46PREDICTED: probable small nuclear ribonucleoprotein F isoform X1 [Sesamum indic

Alignment

This contig is upended


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rJMSF037M23+                                GAGCTCTTTTCCCTCCACAG-AACCCTAAACCCCTTAA
rJMSF044H07+                                GAGCTCTTTTCCCTCCACAGAAACCCTAAACCCCTTAA
JMFF040M16-                                                      AACCCTAAACCCCTTAA
JMSF044H07-                                 GAGCTCTTTTCCCTCCACAGAAACCCTAAACCCCTTAA
JMSF037M23-                                 GAGCTCTTTTCCCTCCACAG-AACCCTAAACCCCTTAA
rJMFF040M16+                                                          TAAACCCCTTAA
                      ____________________________________________________________
consensus                                   GAGCTCTTTTCCCTCCACAGAAACCCTAAACCCCTTAA
 
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rJMSF037M23+          ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
rJMSF044H07+          ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
JMFF040M16-           ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
JMSF044H07-           ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
JMSF037M23-           ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
rJMFF040M16+          ANGCCATTTTTTTGGGTGCTTTTTCCGNGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
                      ____________________________________________________________
consensus             ACGCCATTTTTTTGGGTGCTCTCTCCGTGGAAAGCTTCAATGGCTACAGTACCAGTGAAT
 
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rJMSF037M23+          CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
rJMSF044H07+          CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
JMFF040M16-           CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
JMSF044H07-           CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
JMSF037M23-           CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
rJMFF040M16+          CCCAANCCTTTNCTGAACNACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
                      ____________________________________________________________
consensus             CCCAAGCCTTTCCTGAACAACTTGACTGGAAAGCCTGTCATGGTGAAACTGAAGTGGGGA
 
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rJMSF037M23+          ATGGAGTACAAAGGATTTCTGGTTTCTGTGGGTTCATATATGAACTTGCAGCTGGCAAAT
rJMSF044H07+          ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
JMFF040M16-           ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
JMSF044H07-           ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
JMSF037M23-           ATGGAGTACAAAGGATTTCTGGTTTCTGTGGGTTCATATATGAACTTGCAGCTGGCAAAT
rJMFF040M16+          ATGGAGTACAAAGGATTTTTGGTTTCTGTGGATTCATATATGNACTTGCAGNTGGCAAAT
                      ____________________________________________________________
consensus             ATGGAGTACAAAGGATTTCTGGTTTCTGTGGATTCATATATGAACTTGCAGCTGGCAAAT
 
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rJMSF037M23+          GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
rJMSF044H07+          GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
JMFF040M16-           GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
JMSF044H07-           GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
JMSF037M23-           GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
rJMFF040M16+          GCAGAAGAATACATTGATGGACAAAGCNCTGGAACACTTGGAGNAATCCTCATCAGANGT
                      ____________________________________________________________
consensus             GCAGAAGAATACATTGATGGACAAAGCACTGGAACACTTGGAGAAATCCTCATCAGATGT
 
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rJMSF037M23+          AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
rJMSF044H07+          AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
JMFF040M16-           AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
JMSF044H07-           AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
JMSF037M23-           AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
rJMFF040M16+          AACAATGTCCTTTACCTTNGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGNTGCTGAG
                      ____________________________________________________________
consensus             AACAATGTCCTCTACCTTCGTGGGGTACCCGAGGATGAAGAGGTGGAAGATGCTGCTGAG
 
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rJMSF037M23+          TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
rJMSF044H07+          TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
JMFF040M16-           TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
JMSF044H07-           TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
JMSF037M23-           TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
rJMFF040M16+          TAGAANTAGGAAGTCCNCTTCGTGNTGTAGTNATCATTTGGNGAGGCAACCCGAGTACAA
                      ____________________________________________________________
consensus             TAGAACTAGGAAGTCCACTTCGTGCTGTAGTCATCATCTGGAGAGGCAACCCGAGTACAA
 
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rJMSF037M23+          GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
rJMSF044H07+          GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
JMFF040M16-           GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
JMSF044H07-           GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
JMSF037M23-           GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
rJMFF040M16+          GCTCANGTCNAANGATGNTTCAGCCTATCCTCAGAATTGCATCANGTATTGGGTTATTNA
                      ____________________________________________________________
consensus             GCTCATGTCAAACGATGCTTCAGCCTATCCTCAGAATTGCATCATGTATTGGGTTATTAA
 
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rJMSF037M23+          CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
rJMSF044H07+          CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
JMFF040M16-           CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
JMSF044H07-           CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
JMSF037M23-           CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
rJMFF040M16+          CCNCCTTGTGTGTAACTAGNTAATGACNNTAATNTTTTNTAAGGNTGCCTTTTGNTGTAA
                      ____________________________________________________________
consensus             CCACCTTGTGTGTAATTAGTTAATGACACTAATCTTTTTTAAGGCTGCCTTTTGCTGTAA
 
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rJMSF037M23+          AAGAT                                                       
rJMSF044H07+          AAGATTGTCGGAT                                               
JMFF040M16-           AAGATTGTCGGATTATTTCTTTCA                                    
JMSF044H07-           AAGATTGTCGGATTATTTCTTTCAGGGATGGATGGATGATTAAGGTGCCAAAA       
JMSF037M23-           AAGATTGTCGGATTATTTCTTTCAGGGATGGATGGATGATTAAGGTGCCAAAA       
rJMFF040M16+          AAGATTGTCGGANTATTTNTTTCAGGGATGGATGGATGANTAAGGNGCCAAAATATCCCA
                      ____________________________________________________________
consensus             AAGATTGTCGGATTATTTCTTTCAGGGATGGATGGATGATTAAGGTGCCAAAATATCCCA