Contig 013786:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016C08Sequence248013786 (2)gb|KCW62479.1|6e-41hypothetical protein EUGRSUZ_H05117 [Eucalyptus grandis] gb|KCW62480.1| hypothet396002753 (13)ref|XP_009797884.1|2e-58PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nicotiana sylvestris]
JMFF040C09Sequence709013786 (2)ref|XP_009626009.1|1e-107PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMCP016C08-                                                               ATCTGTTT
                      ____________________________________________________________
consensus                                                                 ATCTGTTT
 
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JMCP016C08-           CTTCCTgaccaTCTTTATAatgaataccCTGGtcCAAATATGGCgttgaTcctgtgccGG
rJMFF040C09+                     TCTTTATATACTTATGGCTGGAGCAAATATGGCCAACTTGGACACGGGG
                      ____________________________________________________________
consensus             CTTCCTCTGGTTCTTTATATACTTATGGCTGGAGCAAATATGGCCAACTTGGACACGGGG
 
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JMCP016C08-           ATaTacttatggtggTTGTTCCCTcattcgTactttggaacgtaccgctaaaataaagag
rJMFF040C09+          ATTTTGAAGACCACCTTGTTCCCTGTAAGCTTGAAACCTTGCATGGCGATTTTATTTCTC
                      ____________________________________________________________
consensus             ATTTTGAATACCACCTTGTTCCCTGTAAGCTTGAAACCTTGCATGGCGATTTTATTTCTC
 
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JMCP016C08-           ggtaaagttcacctacctctgtgtggtaccgtgTatgttCTGAaccggtcgaaatTGGTT
rJMFF040C09+          AGATTTCAGGTGGATGGAGACACACCATGGCACTTACAACTGATGGCAAGCTTTATGGTT
                      ____________________________________________________________
consensus             CGATTTCAGGTGGATGGAGACACACCATGGCACTTACAACTGATGGCCAGCTTTATGGTT
 
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JMCP016C08-           GGGGATGGAATAtcaTTGGAgAtGTTccacaTccTGAgttacaaGtTCACTGTTCACCCA
rJMFF040C09+          GGGGATGGAATAAGTTTGGACAAGTTGGTGTTGGTGACAATGTTGATCACTGTTCACCCA
                      ____________________________________________________________
consensus             GGGGATGGAATAAGTTTGGACAAGTTGGTGTTGGTGACAATGTTGATCACTGTTCACCCA
 
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rJMFF040C09+          TACAAGTCAAATTTCCACACGATCAGAAAGTAGTTGCAGTCTCATGTGGTTGGAGGCATA
                      ____________________________________________________________
consensus             TACAAGTCAAATTTCCACACGATCAGAAAGTAGTTGCAGTCTCATGTGGTTGGAGGCATA
 
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rJMFF040C09+          CACTGGCTGTTACTGAAAGGCAAAATGTGTTTTCTTGGGGTAGAGGCACAAATGGACAGT
                      ____________________________________________________________
consensus             CACTGGCTGTTACTGAAAGGCAAAATGTGTTTTCTTGGGGTAGAGGCACAAATGGACAGT
 
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rJMFF040C09+          TAGGCCATGGAGAATCTGCTGACAGGAATGCCCCAAAGATCATAGAAGCATTGAGCATGG
                      ____________________________________________________________
consensus             TAGGCCATGGAGAATCTGCTGACAGGAATGCCCCAAAGATCATAGAAGCATTGAGCATGG
 
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rJMFF040C09+          ATGGATCAAGAAACNTACAAATTGAAGCTCCTAAATCCAAACCATGTACAGTTGAAAAAA
                      ____________________________________________________________
consensus             ATGGATCAAGAAACNTACAAATTGAAGCTCCTAAATCCAAACCATGTACAGTTGAAAAAA
 
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rJMFF040C09+          GTTGGGTTTCGCCAACACAGAGATACGCAGTTGTTCCAGATGAGAATGNGACAGACAACG
                      ____________________________________________________________
consensus             GTTGGGTTTCGCCAACACAGAGATACGCAGTTGTTCCAGATGAGAATGNGACAGACAACG
 
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rJMFF040C09+          GAAATGATGTGAATGTCCCAGAAAACGATGTGAAGAGGATGCGAGTGTGAAATATATCTT
                      ____________________________________________________________
consensus             GAAATGATGTGAATGTCCCAGAAAACGATGTGAAGAGGATGCGAGTGTGAAATATATCTT
 
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rJMFF040C09+          GCACAGTTGCACGAAGCTAACATTGAGTTTGGAATATGACCTTCCTTGTAACAATCATGC
                      ____________________________________________________________
consensus             GCACAGTTGCACGAAGCTAACATTGAGTTTGGAATATGACCTTCCTTGTAACAATCATGC
 
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rJMFF040C09+          CATATATTTGAGATTGCTTGCAGTTGTACTCTCCAGTCTCCTCTATATCTACTCAGTGTT
                      ____________________________________________________________
consensus             CATATATTTGAGATTGCTTGCAGTTGTACTCTCCAGTCTCCTCTATATCTACTCAGTGTT