Contig 013780:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038L11Sequence580007442 (7)ref|XP_008812364.1|8e-48PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Phoenix dactylifera]720013780 (3)gb|AEI98631.1|1e-19hypothetical protein 111O18.18 [Coffea canephora]
JMFS046G06Sequence320013780 (3)
JMFS057C07Sequence449013780 (3)ref|XP_010316356.1|6e-09PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa isoform X3 [Solanum lycope

Alignment

This contig is upended


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JMFS046G06+                                        CAAAATCAAGGAGTACTCGAAACATTAAAGA
JMFS057C07+                                        CAAAATCAAGGAGTACTCGAAACATTAAAGA
                      ____________________________________________________________
consensus                                          CAAAATCAAGGAGTACTCGAAACATTAAAGA
 
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JMFS046G06+           AAAACCCCCCAGTGCCTGACCACTCACTCGTATGTTTCTCCAATGAACATACAGGGTTCA
JMFS057C07+           AAAACCCCCCAGTGCCTGACCACTCACTCGTATGTTTCTCCAATGAACATACAGGGTTCA
rJMFF038L11-          AAAACCCCCCAGTGCCTGACCACTCACTCGTATGTTTCTCCAATGAACATACAGGGTTCA
                      ____________________________________________________________
consensus             AAAACCCCCCAGTGCCTGACCACTCACTCGTATGTTTCTCCAATGAACATACAGGGTTCA
 
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JMFS046G06+           CAACAGAATAGAAAATGGAACTGAGACAACTAAAAGGCACTCCTAGACTGGGATATACCA
JMFS057C07+           CAACAGAATAGAAAATGGAACTGAGCCAACTAAAAGGCACTCTTAGACTGGGATATACCA
rJMFF038L11-          CAACAGAATAGAAAATGGAACTGAGACAACTAAAAGGCACTCCTAGACTGGGATATACCA
                      ____________________________________________________________
consensus             CAACAGAATAGAAAATGGAACTGAGACAACTAAAAGGCACTCCTAGACTGGGATATACCA
 
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JMFS046G06+           GTTTCTAAAGCTTGCTAACATCAATCACATTCACTGCCAACACAGCTCCAAAAGTGCCGT
JMFS057C07+           GTTTGTAAAGCTTGCTAACATCAATCACATTCACTGCCAACACAGCTCCAAAAGTGCCGT
rJMFF038L11-          GTTTCTAAAGCTTGCTAACATCAATCACATTCACTGCCAACACAGCTCCAAAAGTGCCGT
                      ____________________________________________________________
consensus             GTTTCTAAAGCTTGCTAACATCAATCACATTCACTGCCAACACAGCTCCAAAAGTGCCGT
 
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JMFS046G06+           AGGAACATTGAGACATTAAACTGAAGTAAATAAATCATCAGATGGTTGGCCTTCAAGCAT
JMFS057C07+           AGGAACATTGAGACATTAAACTGAAGTAAATAAATCATCAGATGGTTGGCCTTCAAGCAT
rJMFF038L11-          AGGAACATTGAGACATTAAACTGAAGTAAATAAATCATCAGATGGTTGGCCTTCAAGCAT
                      ____________________________________________________________
consensus             AGGAACATTGAGACATTAAACTGAAGTAAATAAATCATCAGATGGTTGGCCTTCAAGCAT
 
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JMFS046G06+           TAGTACTCATACTCACGAGAACTTGGCCTATCAGACTTCCGATAATCAC           
JMFS057C07+           TAGTACTCATACTCACGAGAACTTGGCCTATCAGACTTCCGATAATCACGGTCCTTTTCA
rJMFF038L11-          TAGTACTCATACTCACGAGAACTTGGCCTATCAGACTTCCGATAATCACGGTCCTTTTCA
                      ____________________________________________________________
consensus             TAGTACTCATACTCACGAGAACTTGGCCTATCAGACTTCCGATAATCACGGTCCTTTTCA
 
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JMFS057C07+           GATGGCTCAGATCCTGCGCGGCCATATGCATAATCATCATCCTCCGTTTGTTCATATCGA
rJMFF038L11-          GATGGCTCAGATCCTGCGCGGCCATATGCATAATCATCATCCTCCGTTTGTTCATATCGA
                      ____________________________________________________________
consensus             GATGGCTCAGATCCTGCGCGGCCATATGCATAATCATCATCCTCCGTTTGTTCATATCGA
 
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JMFS057C07+           TCACGACCAGAATCTTTGTAGCGGTCATCATCTCCACGTGCATCCTGGTTATCATACT  
rJMFF038L11-          TCACGACCAGAATCTTTGTAGCGGTCATCATCTCCACGTGCATCCTGGTTATCATACTCA
                      ____________________________________________________________
consensus             TCACGACCAGAATCTTTGTAGCGGTCATCATCTCCACGTGCATCCTGGTTATCATACTCA
 
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rJMFF038L11-          CGACTTTGGTGATGGTCATAATAATCATAGTGTCCACGGTCACGATCTCCCTCTGAACGC
                      ____________________________________________________________
consensus             CGACTTTGGTGATGGTCATAATAATCATAGTGTCCACGGTCACGATCTCCCTCTGAACGC
 
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rJMFF038L11-          CTATGCCCAGGATCAGACTGCTCATACCACCCTTGGTCATCCTCCATCCCTGCATGATCA
                      ____________________________________________________________
consensus             CTATGCCCAGGATCAGACTGCTCATACCACCCTTGGTCATCCTCCATCCCTGCATGATCA
 
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rJMFF038L11-          TAGTTCCTCTCCTTTTCACCATGTCGGTCTTGCTCATGATCATAATCATAGTCTCTATCA
                      ____________________________________________________________
consensus             TAGTTCCTCTCCTTTTCACCATGTCGGTCTTGCTCATGATCATAATCATAGTCTCTATCA
 
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rJMFF038L11-          CGAGAACGCCCACGATCATTGTCAATATCAAATTCATAATCTCTGCCTCTATCTCTATCC
                      ____________________________________________________________
consensus             CGAGAACGCCCACGATCATTGTCAATATCAAATTCATAATCTCTGCCTCTATCTCTATCC
 
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rJMFF038L11-          CTCTCACGATGACGATCTCGTTCCCGCTCCTTATCTCGATCTTTATCACGATCCTTTCCA
                      ____________________________________________________________
consensus             CTCTCACGATGACGATCTCGTTCCCGCTCCTTATCTCGATCTTTATCACGATCCTTTCCA