| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004N22 | Sequence | 537 | 007909 (3) | ref|XP_006340200.1| | 2e-16 | PREDICTED: protein disulfide isomerase-like 1-4-like [Solanum tuberosum] | 789 | 013764 (3) | gb|KHG16937.1| | 3e-109 | Protein disulfide isomerase-like 1-4 [Gossypium arboreum] |
| JMFF035N21 | Sequence | 549 | 007909 (3) | ref|XP_006340200.1| | 3e-11 | PREDICTED: protein disulfide isomerase-like 1-4-like [Solanum tuberosum] | 731 | 013764 (3) | gb|AAO26314.1| | 8e-99 | protein disulphide isomerase, partial [Elaeis guineensis] |
| JMSF026D09 | Sequence | 641 | 007909 (3) | ref|XP_006340200.1| | 1e-13 | PREDICTED: protein disulfide isomerase-like 1-4-like [Solanum tuberosum] | 762 | 013764 (3) | gb|KHG16937.1| | 5e-113 | Protein disulfide isomerase-like 1-4 [Gossypium arboreum] |
This contig is upended
. : . : . : . : . : . :
rJMSF026D09+ AAAGCTTATATTTGTGTATATCAA
rJMFF004N22+ TGTATATCAA
____________________________________________________________
consensus AAAGCTTATATTTGTGTATATCAA
. : . : . : . : . : . :
rJMSF026D09+ AATTGATGATGAAGATGTTGGAAGGCCTGTAGCAAATTACTTTGGAGTTGAAGGGGATAC
rJMFF004N22+ AATTGATGATGAAGATGTTGGAAGGCCTGTAGCAAATTACTTTGGAGTTGAAGGGGATAC
rJMFF035N21+ GAAGGGGATAC
____________________________________________________________
consensus AATTGATGATGAAGATGTTGGAAGGCCTGTAGCAAATTACTTTGGAGTTGAAGGGGATAC
. : . : . : . : . : . :
rJMSF026D09+ TGCAAAGATAATTGGATACTCAGGACTTGAAGATGCTAAGAAATATATCTTTGATGGGGA
rJMFF004N22+ TGCAAAGATAATTGGATACTCAGGACTTGAAGATGCTAAGAAATATATCTTTGATGGGGA
rJMFF035N21+ TGCAAAGATAATTGGATACTCAGGACTTGAAGATGCTAAGAAATATATCTTTGATGGGGA
____________________________________________________________
consensus TGCAAAGATAATTGGATACTCAGGACTTGAAGATGCTAAGAAATATATCTTTGATGGGGA
. : . : . : . : . : . :
rJMSF026D09+ GATTACAGTCGAGAAGATTAAGGAATTTGCTGCTAACTTTGTGGAAGACAAGCTCAAACC
rJMFF004N22+ GATTACAGTCGAGAAGATTAAGGAATTTGCTGCTAACTTTGTGGAAGACAAGCTCAAACC
rJMFF035N21+ GATTACAGTCGAGAAGATTAAGGAATTTGCTGCTAACTTTGTGGAAGACAAGCTCAAACC
____________________________________________________________
consensus GATTACAGTCGAGAAGATTAAGGAATTTGCTGCTAACTTTGTGGAAGACAAGCTCAAACC
. : . : . : . : . : . :
rJMSF026D09+ TTTCTACAAATCAGATCCCATTCCCGAGACTAACGAAGGGGATGTGAAAATAGTGGTGGG
rJMFF004N22+ TTTCTACAAATCAGATCCCATTCCCGAGACTAACGAAGGGGATGTGAAAATAGTGGTGGG
rJMFF035N21+ TTTCTACAAATCAGATCCCATTCCCGAGACTAACGAAGGGGATGTGAAAATAGTGGTGGG
____________________________________________________________
consensus TTTCTACAAATCAGATCCCATTCCCGAGACTAACGAAGGGGATGTGAAAATAGTGGTGGG
. : . : . : . : . : . :
rJMSF026D09+ GAATAATTTTGACGAAATAGTTTTGGATGAGTCAAAAGATGTTCTTCTTGAGATCTATGC
rJMFF004N22+ GAATAATTTTGACGAAATAGTTTTGGATGAGTCAAAAGATGTTCTTCTTGAGATCTATGC
rJMFF035N21+ GAATAATTTTGACGAAATAGTTTTGGATGAGTCAAAAGATGTTCTTCTTGAGATCTATGC
____________________________________________________________
consensus GAATAATTTTGACGAAATAGTTTTGGATGAGTCAAAAGATGTTCTTCTTGAGATCTATGC
. : . : . : . : . : . :
rJMSF026D09+ ACCATGGTGTGGCCATTGCCAAGCTTTAGAACCAACATACAACAAGCTTGCCAAGCACTT
rJMFF004N22+ ACCATGGTGTGGCCATTGCCAAGCTTTAGAACCAACATACAACAAGCTTGCCAAGCACTT
rJMFF035N21+ ACCATGGTGTGGCCATTGCCAAGCTTTAGAACCAACATACAACAAGCTTGCCAAGCACTT
____________________________________________________________
consensus ACCATGGTGTGGCCATTGCCAAGCTTTAGAACCAACATACAACAAGCTTGCCAAGCACTT
. : . : . : . : . : . :
rJMSF026D09+ ACGAGGCATTGAGTCTCTTGTCATTGCTAAAATGGATGGATCAACAAATGAACACCCTAA
rJMFF004N22+ ACGAGGCATTGAGTCTCTTGTCATTGCTAAAATGGATGGATCAACAAATGAACACCCTAA
rJMFF035N21+ ACGAGGCATTGAGTCTCTTGTCATTGCTAAAATGGATGGATCAACAAATGAACACCCTAA
____________________________________________________________
consensus ACGAGGCATTGAGTCTCTTGTCATTGCTAAAATGGATGGATCAACAAATGAACACCCTAA
. : . : . : . : . : . :
rJMSF026D09+ AGCTAAGGCTGAGGGATTTCCAACCATCCTTTTCTTCCCAGCCGGAAACAAGTCTTCTGA
rJMFF004N22+ AGCTAAGGCTGAGGGATTTCCAACCATCCTTTTCTTCCCAGCCGGAAACAAGTCTTCTGA
rJMFF035N21+ AGCTAAGGCTGAGGGATTTCCAACCATCCTTTTCTTCCCAGCCGGAAACAAGTCTTCTGA
____________________________________________________________
consensus AGCTAAGGCTGAGGGATTTCCAACCATCCTTTTCTTCCCAGCCGGAAACAAGTCTTCTGA
. : . : . : . : . : . :
rJMSF026D09+ TCCAATTGCTGTCGACTCCGCCAGGACAGTGGTGGCGTTTTACAAGTTTATTAAGAAACA
rJMFF004N22+ TCCAATTGCTGTCGACTCCGCCAGGACAGTGGTGGCGTTTTACAAGTTTATTAAGAAACA
rJMFF035N21+ TCCAATTGCTGTCGACTCCGCCAGGACAGTGGTGGCGTTTTACAAGTTTATTAAGAAACA
____________________________________________________________
consensus TCCAATTGCTGTCGACTCCGCCAGGACAGTGGTGGCGTTTTACAAGTTTATTAAGAAACA
. : . : . : . : . : . :
rJMSF026D09+ CGCTGCTATCCCCTTCAAGCTCCAGAAGCCATCAACCTCTACCTCGACTGAGAAGACCGA
rJMFF004N22+ CGCTGCTATCCCCTTCAAGCTCCAGAAGCCATCAACCTCTACCTCGACTGAGAAGACCGA
rJMFF035N21+ CGCTGCTATCCCCTTCAAGCTCCAGAAGCCATCAACCTCTACCTCGACTGAGAAGACCGA
____________________________________________________________
consensus CGCTGCTATCCCCTTCAAGCTCCAGAAGCCATCAACCTCTACCTCGACTGAGAAGACCGA
. : . : . : . : . : . :
rJMSF026D09+ AGTCAAAGAAGACGTCAAAAGTTCTTCCGGTAAAGTGAATGATGAATTGTGAGAGCAGAC
rJMFF004N22+ AGTCAAAGAAGACGTCAAAAGTTCTTCCGGTAAAGTGAATGATGAATTGTGAGAGCAGAC
rJMFF035N21+ AGTCAAAGAAGACGTCAAAAGTTCTTCCGGTAAAGTGAATGATGAATTGTGAGAGCAGAC
____________________________________________________________
consensus AGTCAAAGAAGACGTCAAAAGTTCTTCCGGTAAAGTGAATGATGAATTGTGAGAGCAGAC
. : . : . : . : . : . :
rJMSF026D09+ GTGTAACATTAATGTAAGATTCCTCTTTAGTTTTTTTGTAACATTTGGAAGTTTTGACAG
rJMFF004N22+ GTGTAACATTAATGTAAGATTCCTCTTTAGTTTTTTTGTAACATTTGGAAGTTTTGACAG
rJMFF035N21+ GTGTAACATTAATGTAAGATTCCTCTTTAGTTTTTTTGTAACATTTGGAAGTTTTGACAG
____________________________________________________________
consensus GTGTAACATTAATGTAAGATTCCTCTTTAGTTTTTTTGTAACATTTGGAAGTTTTGACAG
. : . : . : . : . : . :
rJMSF026D09+ CAACATTCTATGGAAGTT
rJMFF004N22+ CAACATTCTATGGAAGTTGTAACATTAATGTTTTCTGAAAACGGTAAAGAAAGGTCTCT
rJMFF035N21+ CAACATTCTATGGAAGTTGTAACATTAATGTTTTCTGAAAACGGTAAAGAAAGGTCTCTT
____________________________________________________________
consensus CAACATTCTATGGAAGTTGTAACATTAATGTTTTCTGAAAACGGTAAAGAAAGGTCTCTT