Contig 013752:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028M11Sequence578010260 (2)gb|EYU34789.1|2e-68hypothetical protein MIMGU_mgv1a006897mg [Erythranthe guttata]683013752 (2)ref|XP_009587705.1|4e-101PREDICTED: COP9 signalosome complex subunit 3-like isoform X1 [Nicotiana toment
JMFF033H24Sequence434010260 (2)gb|EYU34789.1|1e-35hypothetical protein MIMGU_mgv1a006897mg [Erythranthe guttata]688013752 (2)ref|XP_009587705.1|1e-86PREDICTED: COP9 signalosome complex subunit 3-like isoform X1 [Nicotiana toment

Alignment

This contig is upended


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rJMFF028M11+                                                          TCAGCCCTACCT
                      ____________________________________________________________
consensus                                                             TCAGCCCTACCT
 
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rJMFF028M11+          GGAGTTGGCAAATAGTTATAACCTTGGAAAAATCTCTGAGCTTGAGACATGTGTACAGAC
rJMFF033H24+                                                    TGAGACATGTGTACAGAC
                      ____________________________________________________________
consensus             GGAGTTGGCAAATAGTTATAACCTTGGAAAAATCTCTGAGCTTGAGACATGTGTACAGAC
 
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rJMFF028M11+          TAACAAGGACAAGTATGAAATTGACAATAACCTTGGATTGGTGCAGCAAGTAGTGTCGTC
rJMFF033H24+          TAACAAGGACAAGTATGAAATTGACAATANCTTTGGATTGGTGCAGCAAGTAGTGTCGTC
                      ____________________________________________________________
consensus             TAACAAGGACAAGTATGAAATTGACAATAACTTTGGATTGGTGCAGCAAGTAGTGTCGTC
 
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rJMFF028M11+          TATATATAAACGCAATATTCAGAGATTGACTCAAACTTATCTCACCCTTTCCCTTCAAGA
rJMFF033H24+          TATATATAAACGCAATATTCAGAGATTGACTCAAACTTATCTCACCCTTTCCCTTCAAGA
                      ____________________________________________________________
consensus             TATATATAAACGCAATATTCAGAGATTGACTCAAACTTATCTCACCCTTTCCCTTCAAGA
 
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rJMFF028M11+          TATTGCTAATACTGTCCAACTAAATAGCCCCAAGGAAGCAGAAATGCATGTCCTCCAAAT
rJMFF033H24+          TATTGCTAATACTGTCCAANTAAATAGCCCCAAGGAAGCAGAAATGCATGTCCTCCAAAT
                      ____________________________________________________________
consensus             TATTGCTAATACTGTCCAACTAAATAGCCCCAAGGAAGCAGAAATGCATGTCCTCCAAAT
 
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rJMFF028M11+          GATTGAAGATGGTGAAATATATGCAACCATCAATCAGAAGGATGGGATGGTTAGATTTCT
rJMFF033H24+          GATTGAAGATGGTGAAATATATGCAACCATCAATCAGAAGGATGGGATGGTTAGATTTCT
                      ____________________________________________________________
consensus             GATTGAAGATGGTGAAATATATGCAACCATCAATCAGAAGGATGGGATGGTTAGATTTCT
 
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rJMFF028M11+          GGAGGATCCTGAGCAATATAAGACTTGTGGAATGATTGAACACATTGATTCATCAATTCA
rJMFF033H24+          GGAGGATCNTGAGCAATATAAGACTTGTGGAATGATTGAACACATTGATTCATCAATTCA
                      ____________________________________________________________
consensus             GGAGGATCCTGAGCAATATAAGACTTGTGGAATGATTGAACACATTGATTCATCAATTCA
 
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rJMFF028M11+          GAGAATAATGATGCTGTCGAAAAAACTAACATGTATGGATGAACGTATGTCATGCGACCC
rJMFF033H24+          GAGAATAATGATGCTGTCGAAAAAACTAACATGTATGGATGAACGTATGTCATGCGACCC
                      ____________________________________________________________
consensus             GAGAATAATGATGCTGTCGAAAAAACTAACATGTATGGATGAACGTATGTCATGCGACCC
 
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rJMFF028M11+          TTCCTACCTTGCTAAGGTTGGTAGAGAGAGACAAAGATTTGATTTTGATGATATTGAGGG
rJMFF033H24+          TTCCTACCTTGCTAAGGTTGGTAGAGAGAGACAAAGATTTGATTTTGATGATATTGAGGG
                      ____________________________________________________________
consensus             TTCCTACCTTGCTAAGGTTGGTAGAGAGAGACAAAGATTTGATTTTGATGATATTGAGGG
 
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rJMFF028M11+          TGTACCTCAGAAGTTCAACTTATGAAGAATTTGAGCAATTATTGTGAAACAAGTTCGTGT
rJMFF033H24+          TGTACCTCAGAAGTTCAACTTATGAAGAATTTGAGCAATTATTGTGAAACAAGTTCGTGT
                      ____________________________________________________________
consensus             TGTACCTCAGAAGTTCAACTTATGAAGAATTTGAGCAATTATTGTGAAACAAGTTCGTGT
 
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rJMFF028M11+          TGGGAGGAAATTGTATTTCTATCATCTCCCCACTGTATTAGGAAAGTAGTAGAAATTACA
rJMFF033H24+          TGGGAGGAAATTGTATTTCTATCATCTCCCCACTGTATTAGGAAAGTAGTAGAAATTACA
                      ____________________________________________________________
consensus             TGGGAGGAAATTGTATTTCTATCATCTCCCCACTGTATTAGGAAAGTAGTAGAAATTACA
 
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rJMFF028M11+          TTATACTTAACATCATGTATTTTTGCATGAAATGGGATGAGGGGAATAGCTTGTGTTGAT
rJMFF033H24+          TTATACTTAACATCATGTATTTTTGCATGAAATGGGATGAGGGGAATAGCTTGTGTTGAT
                      ____________________________________________________________
consensus             TTATACTTAACATCATGTATTTTTGCATGAAATGGGATGAGGGGAATAGCTTGTGTTGAT
 
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rJMFF028M11+          TGAGATGGATG                                                 
rJMFF033H24+          TGAGATGGATGCTGAAGATGATGTTGTGATGATCACATTTTAGAATTTGGTATAACCATC
                      ____________________________________________________________
consensus             TGAGATGGATGCTGAAGATGATGTTGTGATGATCACATTTTAGAATTTGGTATAACCATC