| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032F23 | Sequence | 609 | 006013 (10) | emb|CBI19420.3| | 9e-37 | unnamed protein product [Vitis vinifera] | 776 | 013749 (4) | ref|XP_009791060.1| | 7e-48 | PREDICTED: transcription initiation factor TFIID subunit 4b-like, partial [Nico |
| JMSF026N17 | Sequence | 288 | 006013 (10) | ref|XP_010664529.1| | 2e-20 | PREDICTED: transcription initiation factor TFIID subunit 4b-like [Vitis vinifer | 658 | 013749 (4) | ref|XP_009791060.1| | 7e-41 | PREDICTED: transcription initiation factor TFIID subunit 4b-like, partial [Nico |
| JMSF049I06 | Sequence | 721 | 013749 (4) | ref|XP_009791060.1| | 9e-57 | PREDICTED: transcription initiation factor TFIID subunit 4b-like, partial [Nico | |||||
| JMSF051F03 | Sequence | 698 | 006013 (10) | ref|XP_009793383.1| | 1e-44 | PREDICTED: transcription initiation factor TFIID subunit 4b-like isoform X1 [Ni | 776 | 013749 (4) | ref|XP_009791060.1| | 2e-56 | PREDICTED: transcription initiation factor TFIID subunit 4b-like, partial [Nico |
This contig is upended
. : . : . : . : . : . :
rJMSF049I06+ CAA
____________________________________________________________
consensus CAA
. : . : . : . : . : . :
rJMSF049I06+ GACATAGAACAATTGNTCACCTCTGATGTTCGCCAACAAATCATGGCAATGAACCGAAAG
rJMSF051F03+ CGCCNACAAATCANGGCAATGAACCGAAAG
____________________________________________________________
consensus GACATAGAACAATTGNTCACCTCTGATGTTCGCCAACAAATCATGGCAATGAACCGAAAG
. : . : . : . : . : . :
rJMSF049I06+ GCTCGGGAAGAATGGGAAAGGAAGCAATCTGAAGCAGAAAAAGTCCAAAAGACAAATGAA
rJMSF051F03+ GCTCGGGAAGAATGGGAAAGGAAGCCATTTGAAGCAGAAAAAGTCCAAAAGACAAATGAN
rJMSF026N17+ CAAATGAT
rJMFF032F23+ GGGAAGAATGGGAAAGGAAGCAATCTGAAGCAGAAAAAGTCCAAAAGACAAATGAA
____________________________________________________________
consensus GCTCGGGAAGAATGGGAAAGGAAGCAATCTGAAGCAGAAAAAGTCCAAAAGACAAATGAA
. : . : . : . : . : . :
rJMSF049I06+ CCAGATGGCGATGCTGCAGCTGATGGTGATAAGGATAAGGATGACAGTCAGGCAAAATCA
rJMSF051F03+ CCAGATGGCGATGCTGCAGCTGATGGTGATAAGGATAAGGATGACAGTCAGGCAAAATCA
rJMSF026N17+ CCAGATGGCGATGCTGCAGCTGATGGTGATAAGGATAAGGATGACAGTCAGGCAAAATCA
rJMFF032F23+ CCAGATGGCGATGCTGCAGCTGATGGTGATAAGGATAAGGATGACAGTCAGGCAAAATCA
____________________________________________________________
consensus CCAGATGGCGATGCTGCAGCTGATGGTGATAAGGATAAGGATGACAGTCAGGCAAAATCA
. : . : . : . : . : . :
rJMSF049I06+ GTGAAGGTAAACAAGGAAGAGGATGACAAGATGCGCACAACAGCTGCAAATGTTGCTGCT
rJMSF051F03+ GTGAAGGTAAACAAGGAAGAGGATGACAAGGTGCGCACAACAGCTGCAAATGTTGCTGCT
rJMSF026N17+ GTGAAGGTAAACAAGGAAGAGGATGACAAGATGCGCACAACAGCTGCAAATGTTGCTGCT
rJMFF032F23+ GTGAAGGTAAACAAGGAAGAGGATGACAAGATGCGCACAACAGCTGCAAATGTTGCTGCT
____________________________________________________________
consensus GTGAAGGTAAACAAGGAAGAGGATGACAAGATGCGCACAACAGCTGCAAATGTTGCTGCT
. : . : . : . : . : . :
rJMSF049I06+ CGAGCTGCTGTTGGTGGAGATGACATGTTGTCAAAATGGCAGTTAATAGCAGAACAGGCT
rJMSF051F03+ CGAGCTGCTGTTGGTGGAGATGACATGTTGTCAAAATGGCAGTTAATGGCAGAACAGGCT
rJMSF026N17+ CGAGCTGCTGTTGGTGGAGATGACANGTTGTCAAAATGGCAGTTAATGGCAGAACAGGCT
rJMFF032F23+ CGAGCTGCTGTTGGTGGAGATGACATGTTGTCAAAATGGCAGTTAATGGCAGAACAGGCT
____________________________________________________________
consensus CGAGCTGCTGTTGGTGGAGATGACATGTTGTCAAAATGGCAGTTAATGGCAGAACAGGCT
. : . : . : . : . : . :
rJMSF049I06+ AAGCAGAAACGTGATGCGGCATCGAGCTCACATCCTGGTAAAGATATGCCCCAGAGGGCA
rJMSF051F03+ AAGCAGAAACGTGATGCGGCATCGAGCTCACATCCTGGTAAAGATATGCCCCAGAGGGCA
rJMSF026N17+ AAGCAGAAACGTGATGCGGCATCGAGCTCACATCCTGGTAAAGATATGCCCCAGAGGGCA
rJMFF032F23+ AAGCAGAAACGTGATGCGGCATCGAGCTCACATCCTGGTAAAGATATGCCCCAGAGGGCA
____________________________________________________________
consensus AAGCAGAAACGTGATGCGGCATCGAGCTCACATCCTGGTAAAGATATGCCCCAGAGGGCA
. : . : . : . : . : . :
rJMSF049I06+ TCGTCATCCTCCAGTAGAAATACAAGGGACAACCAAGAAGCTGAAAAAAGGAGTTCATCA
rJMSF051F03+ TCGTCATCCTCCAGTAGAAATACAAGGGACAACCAAGAAGCTGAAAAAAGGAGTTCATCA
rJMSF026N17+ TCGTCATCCTCCAGTAGAAATACAAGGGACAACCAAGAAGCTGAAAAAAGGAGTTCATCA
rJMFF032F23+ TCGTCATCCTCCAGTAGAAATACAAGGGACAACCAAGAAGCTGAAAAAAGGAGTTCATCA
____________________________________________________________
consensus TCGTCATCCTCCAGTAGAAATACAAGGGACAACCAAGAAGCTGAAAAAAGGAGTTCATCA
. : . : . : . : . : . :
rJMSF049I06+ GCTGCCAGTATCACACCAGGTGATGATAGGAATGTTGGGAGAAATCAACTTGTGTCCCAA
rJMSF051F03+ GCTGCCAGTATCACACCAGGTGATGATAGGAATGTTGGGAGAAATCAACTTGTGTCCCAA
rJMSF026N17+ GCTGCCAGTATCACACCAGGTGATGATAGGAATGTTGGGAGAAATCAACTTGTGTCCCAA
rJMFF032F23+ GCTGCCAGTATCACACCAGGTGATGATAGGAATGTTGGGAGAAATCAACTTGTGTCCCAA
____________________________________________________________
consensus GCTGCCAGTATCACACCAGGTGATGATAGGAATGTTGGGAGAAATCAACTTGTGTCCCAA
. : . : . : . : . : . :
rJMSF049I06+ GCTAGAGTTGGTTGCAGTATTACTATCAAAGACGTAATAGCTGTCCTTGAAAGGGAGCCA
rJMSF051F03+ GCTAGAGTTGGTTGCAGTATTACTATCAAAGACGTAATAGCTGTCCTTGAAAGGGAGCCA
rJMSF026N17+ GCTAGAGTTGGTTGCAGTATTACTATCAAAGACGTAATAGCTGTCCTTGAAAGGGAGCCA
rJMFF032F23+ GCTAGAGTTGGTTGCAGTATTACTATCAAAGACGTAATAGCTGTCCTTGAAAGGGAGCCA
____________________________________________________________
consensus GCTAGAGTTGGTTGCAGTATTACTATCAAAGACGTAATAGCTGTCCTTGAAAGGGAGCCA
. : . : . : . : . : . :
rJMSF049I06+ CAAACATCCAAGTCTACATTAGTTTATCGTTTGTATGAGAGAATTTGTTCCGATGGTTTG
rJMSF051F03+ CAAACATCCAAGTCTACATTAGTTTATCGTTTGTATGAGAGAATTTGTTCCGATGGTTTG
rJMSF026N17+ CAAACATCCAAGTCTACATTAGTTTATCGTTTGTATGAGAGAATTTGTTCCGATGGTTTG
rJMFF032F23+ CAAACATCCAAGTCTACATTAGTTTATCGTTTGTATGAGAGAATTTGTTCCGATGGTTTG
____________________________________________________________
consensus CAAACATCCAAGTCTACATTAGTTTATCGTTTGTATGAGAGAATTTGTTCCGATGGTTTG
. : . : . : . : . : . :
rJMSF049I06+ GCTGAATAGTTCCGGTGCCGTGTTTATGGAGTTCTTGTGCACCGTTAAGTGGCGAACAAA
rJMSF051F03+ GCTGAATAGTTCCGGTGCCGTGTTTATGGAGTTCTTGTGCACCGTTAAGTGGCGAACAAA
rJMSF026N17+ GCTGAATAGTTCCGGTGCCGTGTTTATGGAGTTCNTGTGCACCGTTAAGTGGCGAACAAA
rJMFF032F23+ GCTGAATAGTTCCGGTGCCGTGTTTATGGAGTTCTTGTGCACCGTTAAGTGGCGAACAAA
____________________________________________________________
consensus GCTGAATAGTTCCGGTGCCGTGTTTATGGAGTTCTTGTGCACCGTTAAGTGGCGAACAAA
. : . : . : . : . : . :
rJMSF049I06+ TACATTTTCACGTTTTCCCCTCTTTGTTCCTTTTTCGTTTCTACCTATAGCATC
rJMSF051F03+ TACATTTTCACGTTTTCCCCTCTTTGTTCCTTTTTCGTTTCTACCTATAGCATCTTGTTA
rJMSF026N17+ TACATTTTCACGTTTTCCCCTCTTTGTTCCTTTTTCGTTTCTACCTATAGCATCNTGTTA
rJMFF032F23+ TACATTTTCACGTTTTCCCCTCTTTGTTCCTTTTTCGTTTCTACCTATAGCATCTTGTTA
____________________________________________________________
consensus TACATTTTCACGTTTTCCCCTCTTTGTTCCTTTTTCGTTTCTACCTATAGCATCTTGTTA
. : . : . : . : . : . :
rJMSF051F03+ TTAGTTGATTATTATAGTCAGTTTGTTGAATAGAAGCTGTAAAAGGTGTACACTCATATT
rJMSF026N17+ TTAGTTGATTATTATAGTCAGTTTGTTGAATAGAAGCTGTAAAAGGTGTA
rJMFF032F23+ TTAGTTGATTATTATAGTCAGTTTGTTGAATAGAAGCTGTAAAAGGTGTACACTCATATT
____________________________________________________________
consensus TTAGTTGATTATTATAGTCAGTTTGTTGAATAGAAGCTGTAAAAGGTGTACACTCATATT
. : . : . : . : . : . :
rJMSF051F03+ GCTTATATTTTTCAGCACTGTATCAC
rJMFF032F23+ GCTTATATTTTTCAGCACTGTATCACAAATTCACAAGAAAGCTCTGTAGTGCCTTCTTTT
____________________________________________________________
consensus GCTTATATTTTTCAGCACTGTATCACAAATTCACAAGAAAGCTCTGTAGTGCCTTCTTTT