| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008F05 | Sequence | 609 | 013441 (17) | gb|AAS79591.1| | 2e-118 | putative dihydroflavonol reductase [Ipomoea trifida] dbj|BAF36324.1| hypothetica | 749 | 013734 (3) | ref|XP_009593881.1| | 8e-104 | PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2-like [Nicotiana tomentosiformis |
| JMFF027J09 | Sequence | 611 | 013441 (17) | gb|AAS79591.1| | 2e-118 | putative dihydroflavonol reductase [Ipomoea trifida] dbj|BAF36324.1| hypothetica | 740 | 013734 (3) | ref|XP_009593881.1| | 7e-118 | PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2-like [Nicotiana tomentosiformis |
| JMSF013B09 | Sequence | 238 | 013441 (17) | emb|CDP06997.1| | 2e-25 | unnamed protein product [Coffea canephora] | 745 | 013734 (3) | ref|XP_009593881.1| | 6e-110 | PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2-like [Nicotiana tomentosiformis |
This contig is upended
. : . : . : . : . : . :
rJMFF008F05+ GTCCT
rJMSF013B09+ GTCCT
rJMFF027J09+ CCCTTCAATTGGATTGGTCNT
____________________________________________________________
consensus CCCTTCAATTGGATTGGTCCT
. : . : . : . : . : . :
rJMFF008F05+ AGGATGGATTTCATTCCTGGCATTGATGGTCCCCAGTGAGGGTGTCCCAAGAGTGTTGGC
rJMSF013B09+ AGGATGGATTTCATTCCTGGCATTGATGNT-CCCAGTGAGGGTGTCCCAAGAGTGTTGGC
rJMFF027J09+ AGGATGGATTTCATTCCTGGCATTGATGGT-CCCAGTGAGGGTGTCCCAAGAGTGTTGGC
____________________________________________________________
consensus AGGATGGATTTCATTCCTGGCATTGATGGT-CCCAGTGAGGGTGTCCCAAGAGTGTTGGC
. : . : . : . : . : . :
rJMFF008F05+ ATGCTTCAGTAATAACCTCTTAAGGCGTGAACCACTAAAGCTTGTTGATGGAGGCCAATC
rJMSF013B09+ ATGCTTCAGTNATAACCTCTTAAGGCGTGAACCANTAAAGCTTGTTGATGGAGGCCAATC
rJMFF027J09+ ATGCTTCAGTAATAACCTCTTAAGGCGTGAACCACTAAAGCTTGTTGATGGAGGCCAATC
____________________________________________________________
consensus ATGCTTCAGTAATAACCTCTTAAGGCGTGAACCACTAAAGCTTGTTGATGGAGGCCAATC
. : . : . : . : . : . :
rJMFF008F05+ CCAGAGAACCTTTATATACATAAAGGATGCTATTGAAGCTGTTGTCTTGATGATTGAAAA
rJMSF013B09+ CCAGAGAACCTTTATATACATAAAGGATGCTATTGAAGCTGTTGTCTTGATGATTGAAAA
rJMFF027J09+ CCAGAGAACCTTTATATACATAAAGGATGCTATTGAAGCTGTTGTCTTGATGATTGAAAA
____________________________________________________________
consensus CCAGAGAACCTTTATATACATAAAGGATGCTATTGAAGCTGTTGTCTTGATGATTGAAAA
. : . : . : . : . : . :
rJMFF008F05+ TCCTGGCAGGGCTAATGGCCATATTTTCAATGTTGGCAATCCTAACAACGAAGTTACAGT
rJMSF013B09+ TCCTGGCAGGGCTAATGGCCATATTTTCAATGTTGGCAATCCTAACAACGAAGTTACAGT
rJMFF027J09+ TCCTGGCAGGGCTAATGGCCATATTTTCAATGTTGGCAATCCTAACAACGAAGTTACAGT
____________________________________________________________
consensus TCCTGGCAGGGCTAATGGCCATATTTTCAATGTTGGCAATCCTAACAACGAAGTTACAGT
. : . : . : . : . : . :
rJMFF008F05+ TAGGCAGCTTGCCGAAATGATGACACAGGTATATTCAAAGGTGAGCGGAGAAGCTTCTCT
rJMSF013B09+ TAGGCAGCTTGCCGAAATGATGACACAGGTATATTCAAAGGTGAGCGGAGAAGCTTCTCT
rJMFF027J09+ TAGGCAGCTTGCCGAAATGATGACACAGGTATATTCAAAGGTGAGCGGAGAAGCTTCTCT
____________________________________________________________
consensus TAGGCAGCTTGCCGAAATGATGACACAGGTATATTCAAAGGTGAGCGGAGAAGCTTCTCT
. : . : . : . : . : . :
rJMFF008F05+ TGCATCACCAACCATAGATGTTAGTTCTAAAGAATTCTATGGCGAGGGATATGATGACAG
rJMSF013B09+ TGCATCACCAACCATAGATGTTAGTTCTAAAGAATTCTATGGCGAGGGATATGATGACAG
rJMFF027J09+ TGCATCACCAACCATAGATGTTAGTTCTAAAGAATTCTATGGCGAGGGATATGATGACAG
____________________________________________________________
consensus TGCATCACCAACCATAGATGTTAGTTCTAAAGAATTCTATGGCGAGGGATATGATGACAG
. : . : . : . : . : . :
rJMFF008F05+ TGACAAGAGAATTCCAGATATGACAATAATCAACAGACAACTTGGTTGGAATCCAAAGAC
rJMSF013B09+ TGACAAGAGAATTCCNGATATGACAATAATCAACAGACAACTTGGTTGGAATCCAAAGAC
rJMFF027J09+ TGACAAGAGAATTCCAGATATGACAATAATCAACAGACAACTTGGTTGGAATCCAAAGAC
____________________________________________________________
consensus TGACAAGAGAATTCCAGATATGACAATAATCAACAGACAACTTGGTTGGAATCCAAAGAC
. : . : . : . : . : . :
rJMFF008F05+ ATCACTATGGGATTTACTTGAATCGACACTCACATACCAACACAGAACATATGCTGAGGC
rJMSF013B09+ ATCACTATGGGATTTACTTGAATCGACACTCACATACCAACACAGAACATATGCTGAGGC
rJMFF027J09+ ATCACTATGGGATTTACTTGAATCGACACTCACATACCAACACAGAACATATGCTGAGGC
____________________________________________________________
consensus ATCACTATGGGATTTACTTGAATCGACACTCACATACCAACACAGAACATATGCTGAGGC
. : . : . : . : . : . :
rJMFF008F05+ TATCAAGAAGGCA
rJMSF013B09+ TATCAAGAAGGCA
rJMFF027J09+ TATCAAGAAGGCACTCTCGAAATCAACCGCTAGTTGAGTTTAAAAAGACGGTGTGTCGAG
____________________________________________________________
consensus TATCAAGAAGGCACTCTCGAAATCAACCGCTAGTTGAGTTTAAAAAGACGGTGTGTCGAG
. : . : . : . : . : . :
rJMFF027J09+ CTACTCATGGACAGGTTCATATTCCTTTCAAGAATAATAGAAAATATCTAAAGTCATCCT
____________________________________________________________
consensus CTACTCATGGACAGGTTCATATTCCTTTCAAGAATAATAGAAAATATCTAAAGTCATCCT
. : . : . : . : . : . :
rJMFF027J09+ AGATGGAGTTCTCATGCAGCAAAGTTTTGTCATTCAAGTGTCACTGCTAGTCGATAATAG
____________________________________________________________
consensus AGATGGAGTTCTCATGCAGCAAAGTTTTGTCATTCAAGTGTCACTGCTAGTCGATAATAG
. : . : . : . : . : . :
rJMFF027J09+ TAGCTCATAGTCCCTACATGTTTGGGGAGCATGTTGTACCATTCTGTTCTGCACTTCTGC
____________________________________________________________
consensus TAGCTCATAGTCCCTACATGTTTGGGGAGCATGTTGTACCATTCTGTTCTGCACTTCTGC