| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012D17 | Sequence | 535 | 009208 (5) | ref|XP_006359789.1| | 5e-50 | PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero | 777 | 013728 (4) | ref|XP_009624770.1| | 1e-74 | PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana tomentosi |
| JMFF026I15 | Sequence | 606 | 009208 (5) | ref|XP_006359789.1| | 4e-67 | PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Solanum tubero | 730 | 013728 (4) | ref|XP_009776050.1| | 1e-61 | PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana sylvestri |
| JMFF040D02 | Sequence | 712 | 013728 (4) | ref|XP_009776050.1| | 2e-61 | PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana sylvestri | |||||
| JMSF008D09 | Sequence | 244 | 009208 (5) | 769 | 013728 (4) | ref|XP_009624770.1| | 2e-82 | PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Nicotiana tomentosi | |||
This contig is upended
. : . : . : . : . : . :
rJMSF008D09+ ANGGGATAGCGGTTCCAGATCCACTCCAGGCAGTTTG
rJMFF012D17+ G
____________________________________________________________
consensus ANGGGATAGCGGTTCCAGATCCACTCCAGGCAGTTTG
. : . : . : . : . : . :
rJMSF008D09+ TACGCGATGGGGGCAAGATCAGTTCACTTATGGCTCATATTCTTATGTTGCAATTGGAGC
rJMFF040D02+ GGAGC
rJMFF012D17+ TACGCGATGGGGGCAAGATCAGTTCACTTATGGCTCATATTCTTATGTTGCAATTGGAGC
rJMFF026I15+ GGAGC
____________________________________________________________
consensus TACGCGATGGGGGCAAGATCAGTTCACTTATGGCTCATATTCTTATGTTGCAATTGGAGC
. : . : . : . : . : . :
rJMSF008D09+ TGCAGGGGATGATTACGATATTCTTGCTGAAAGTGTTGCAGACCGAGTCTTCTTCGCAGG
rJMFF040D02+ TGCAGGGGATGATTACGATATTCTTGCTGAAAGTGTTGCAGACCGAGTCTTCTTCGCGGG
rJMFF012D17+ TGCAGGGGATGATTACGATATTCTTGCTGAAAGTGTTGCAGACCGAGTCTTCTTCGCGGG
rJMFF026I15+ TGCAGGGGATGATTACGATATTCTTGCTGAAAGTGTTGCAGACCGAGTCTTCTTCGCGGG
____________________________________________________________
consensus TGCAGGGGATGATTACGATATTCTTGCTGAAAGTGTTGCAGACCGAGTCTTCTTCGCGGG
. : . : . : . : . : . :
rJMSF008D09+ AGAAGCAACGAACAGGCAATATCCTGCAACAATGCACGGGGCTTTTCTCAGTGGAATGAG
rJMFF040D02+ AGAAGCAACGAACAGGCAATATCCTGCAACAATGCACGGGGCTTTTCTCAGTGGAATGAG
rJMFF012D17+ AGAAGCAACGAACAGGCAATATCCTGCAACAATGCACGGGGCTTTTCTCAGTGGAATGAG
rJMFF026I15+ AGAAGCAACGAACAGGCAATATCCTGCAACAATGCACGGGGCTTTTCTCAGTGGAATGAG
____________________________________________________________
consensus AGAAGCAACGAACAGGCAATATCCTGCAACAATGCACGGGGCTTTTCTCAGTGGAATGAG
. : . : . : . : . : . :
rJMSF008D09+ AGAGGCCGCCCATATCCTGAGAGTTGCTAACAGAAACTCCATAGCCATAGGCACAGCAGA
rJMFF040D02+ AGAGGCCGCCCATATCCTGAGAGTTGCTAACAGAAACTCCATAGCCATAGGCACAGCAGA
rJMFF012D17+ AGAGGCCGCCCATATCCTGAGAGTTGCTAACAGAAACTCCATAGCCATAGGCACAGCAGA
rJMFF026I15+ AGAGGCCGCCCATATCCTGAGAGTTGCTAACAGAAACTCCATAGCCATAGGCACAGCAGA
____________________________________________________________
consensus AGAGGCCGCCCATATCCTGAGAGTTGCTAACAGAAACTCCATAGCCATAGGCACAGCAGA
. : . : . : . : . : . :
rJMSF008D09+ AAAAGCAAACAATCCCACCCAGGAAACCAAGGATATCAACAGAGTATTCGAGAACCCAGA
rJMFF040D02+ AAAAGCAAACAATCCCACCCAGGAAACCAAGGATATCAACAGAGTATTCGAGAACCCAGA
rJMFF012D17+ AAAAGCAAACAATCCCACCCAGGAAACCAAGGATATCAACAGAGTATTCGAGAACCCAGA
rJMFF026I15+ AAAAGCAAACAATCCCACCCAGGAAACCAAGGATATCAACAGAGTATTCGAGAACCCAGA
____________________________________________________________
consensus AAAAGCAAACAATCCCACCCAGGAAACCAAGGATATCAACAGAGTATTCGAGAACCCAGA
. : . : . : . : . : . :
rJMSF008D09+ CCTTAGATTTAGTCGTTTCTCAGTTCTATATGATCCAACATCACCTGAACTTGGATCTAT
rJMFF040D02+ CCTTAGATTTAGTCGTTTCTCAGTTCTATATGATCCAACATCACCTGAACTTGGATCTAA
rJMFF012D17+ CCTTAGATTTAGTCGTTTCTCAGTTCTATATGATCCAACATCACCTGAACTTGGATCTAA
rJMFF026I15+ CCTTAGATTTAGTCGTTTCTCAGTTCTATATGATCCAACATCACCTGAACTTGGATCTAA
____________________________________________________________
consensus CCTTAGATTTAGTCGTTTCTCAGTTCTATATGATCCAACATCACCTGAACTTGGATCTAA
. : . : . : . : . : . :
rJMSF008D09+ TTCTTTACTTCGCGTGTCATTTGAACTGGATAAAATCGATCCTGACAGCTCCCTGTATCT
rJMFF040D02+ TTCTTTACTTCGCGTGTCATTTGAACTGGATAAAATCGATCCTGACAGCTCCCTGTATCT
rJMFF012D17+ TTCTTTACTTCGCGTGTCATTTGAACTGGATAAAATCGATCCTGACAGCTCCCTGTATCT
rJMFF026I15+ TTCTTTACTTCGCGTGTCATTTGAACTGGATAAAATCGATCCTGACAGCTCCCTGTATCT
____________________________________________________________
consensus TTCTTTACTTCGCGTGTCATTTGAACTGGATAAAATCGATCCTGACAGCTCCCTGTATCT
. : . : . : . : . : . :
rJMSF008D09+ ATATGCCTTGATCCCCAGAAAGCAGGCTGTTGAGCTAAGTGAAGTGGAAGGCGATACAAA
rJMFF040D02+ ATATGCCTTGATCCCCAGAAAGCAGGCTGTTGAGCTAAGTGAAGTGGAAGGCGATACAAA
rJMFF012D17+ ATATGCCTTGATCCCCAGAAAGCAGGCTGTTGAGCTAAGTGAAGTGGAAGGCGATACAAA
rJMFF026I15+ ATATGCCTTGATCCCCAGAAAGCAGGCTGTTGAGCTAAGTGAAGTGGAAGGCGATACAAA
____________________________________________________________
consensus ATATGCCTTGATCCCCAGAAAGCAGGCTGTTGAGCTAAGTGAAGTGGAAGGCGATACAAA
. : . : . : . : . : . :
rJMSF008D09+ CAGGATACAGAAGTTAACTCTTGATTTCGGCATAAAGTTGTGTGGTTGGAGAAGAATATG
rJMFF040D02+ CAGGATACAGAAGTTAACTCTTGATTTCGGCATAAAGTTGTGTGGTTGGAGAAGAATATG
rJMFF012D17+ CAGGATACAGAAGTTAACTCTTGATTTCGGCATAAAGTTGTGTGGTTGGAGAAGAATATG
rJMFF026I15+ CAGGATACAGAAGTTAACTCTTGATTTCGGCATAAAGTTGTGTGGTTGGAGAAGAATATG
____________________________________________________________
consensus CAGGATACAGAAGTTAACTCTTGATTTCGGCATAAAGTTGTGTGGTTGGAGAAGAATATG
. : . : . : . : . : . :
rJMSF008D09+ CTCCGAAGCTGAATCTCTGGTGAATTCCATTTTTTCCAGTAGATCTCAGTGCGAGTAAGT
rJMFF040D02+ CTCCGAAGCTGAATCTCTGGTGAATTCCATTTTTTCCAGTAGATCTCAGTGCGAGTAAGT
rJMFF012D17+ CTCCGAAGCTGAATCTCTGGTGAATTCCATTTTTTCCAGTAGATCTCAGTGCGAGTAAGT
rJMFF026I15+ CTCCGAAGCTGAATCTCTGGTGAATTCCATTTTTTCCAGTAGATCTCAGTGCGAGTAAGT
____________________________________________________________
consensus CTCCGAAGCTGAATCTCTGGTGAATTCCATTTTTTCCAGTAGATCTCAGTGCGAGTAAGT
. : . : . : . : . : . :
rJMSF008D09+ GGATTGTATTAGCTAGTTCAATAATTAGTAAAATTCTTCAAATCTCTGTTCTCTGATTCC
rJMFF040D02+ GGATTGTATTAGCTAGTTCAATAATTAGTAAAATTCTTCAAATCTCTGTTCTCTGATTCC
rJMFF012D17+ GGATTGTATTAGCTAGTTCAATAATTAGTAAAATTCTTCAAATCTCTGTTCTCTGATTCC
rJMFF026I15+ GGATTGTATTAGCTAGTTCAATAATTAGTAAAATTCTTCAAATCTCTGTTCTCTGATTCC
____________________________________________________________
consensus GGATTGTATTAGCTAGTTCAATAATTAGTAAAATTCTTCAAATCTCTGTTCTCTGATTCC
. : . : . : . : . : . :
rJMSF008D09+ CTGAAACTGAAGCTAGGCATTATGCTGTATAGTTGTTGTGATCAAAATCTTAGTC
rJMFF040D02+ CTGAAACTGAAGCTAGGCATTATGCTGTATAGTTGTTGTGATCAAAATCTTAGTCAGGGA
rJMFF012D17+ CTGAAACTGAAGCTAGGCATTATGCTGTATAGTTGTTGTGATCAAAATCTTAGTCAGGGA
rJMFF026I15+ CTGAAACTGAAGCTAGGCATTATGCTGTATAGTTGTTGTGATCAAAATCTTAGTCAGGGA
____________________________________________________________
consensus CTGAAACTGAAGCTAGGCATTATGCTGTATAGTTGTTGTGATCAAAATCTTAGTCAGGGA
. : . : . : . : . : . :
rJMFF040D02+ CCTTAACTCCTATTCTCATTCTCAGTGATTACAATGGAGGGACAAAT
rJMFF012D17+ CCTTAACTCCTATTCTCATTCTCAGTGATTACAATGGAGGGACAAAT
rJMFF026I15+ CCTTAACTCCTATTCTCATTCTCAGTGATTACAATGGAGGGACAAATATGAAGTTTCCCA
____________________________________________________________
consensus CCTTAACTCCTATTCTCATTCTCAGTGATTACAATGGAGGGACAAATATGAAGTTTCCCA