Contig 013724:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025J06Sequence596009277 (6)dbj|BAO57286.1|2e-123V-type proton ATPase subunit [Ipomoea nil]784013724 (5)dbj|BAO57286.1|5e-102V-type proton ATPase subunit [Ipomoea nil]
JMSF017N06Sequence529009277 (6)dbj|BAO57286.1|4e-90V-type proton ATPase subunit [Ipomoea nil]775013724 (5)dbj|BAO57286.1|2e-109V-type proton ATPase subunit [Ipomoea nil]
JMSF034D12Sequence690009277 (6)dbj|BAO57286.1|6e-129V-type proton ATPase subunit [Ipomoea nil]752013724 (5)dbj|BAO57286.1|3e-98V-type proton ATPase subunit [Ipomoea nil]
JMSF036N18Sequence666009277 (6)dbj|BAO57286.1|4e-107V-type proton ATPase subunit [Ipomoea nil]681013724 (5)dbj|BAO57286.1|2e-84V-type proton ATPase subunit [Ipomoea nil]
JMSF042C24Sequence309009277 (6)dbj|BAO57286.1|8e-35V-type proton ATPase subunit [Ipomoea nil]777013724 (5)dbj|BAO57286.1|9e-102V-type proton ATPase subunit [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF017N06+ TNGGCTAGCTATGAGACACTCACTTCCTATGTGGTTCC
rJMSF042C24+ CC
rJMFF025J06+ TTCC
                      ____________________________________________________________
consensus TNGGCTAGCTATGAGACACTCACTTCCTATGTGGTTCC
 
. : . : . : . : . : . :
rJMSF017N06+ CAGATCCTNTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
rJMSF034D12+ AGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
rJMSF042C24+ CAGATCCTCTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
rJMFF025J06+ CAGATCCTCTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
                      ____________________________________________________________
consensus CAGATCCTCTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
 
. : . : . : . : . : . :
rJMSF017N06+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMSF036N18+ GTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMSF034D12+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMSF042C24+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMFF025J06+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
                      ____________________________________________________________
consensus CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
 
. : . : . : . : . : . :
rJMSF017N06+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMSF036N18+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMSF034D12+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMSF042C24+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMFF025J06+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
                      ____________________________________________________________
consensus TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
 
. : . : . : . : . : . :
rJMSF017N06+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMSF036N18+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMSF034D12+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMSF042C24+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMFF025J06+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
                      ____________________________________________________________
consensus GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
 
. : . : . : . : . : . :
rJMSF017N06+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMSF036N18+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMSF034D12+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMSF042C24+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMFF025J06+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
                      ____________________________________________________________
consensus TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
 
. : . : . : . : . : . :
rJMSF017N06+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMSF036N18+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMSF034D12+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMSF042C24+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMFF025J06+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
                      ____________________________________________________________
consensus TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
 
. : . : . : . : . : . :
rJMSF017N06+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMSF036N18+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMSF034D12+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMSF042C24+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMFF025J06+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
                      ____________________________________________________________
consensus AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
 
. : . : . : . : . : . :
rJMSF017N06+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMSF036N18+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMSF034D12+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMSF042C24+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMFF025J06+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
                      ____________________________________________________________
consensus GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
 
. : . : . : . : . : . :
rJMSF017N06+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAACATCTATCCATTTCACTTATT
rJMSF036N18+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
rJMSF034D12+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
rJMSF042C24+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAACATCTATCCATTTCACTTATT
rJMFF025J06+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
                      ____________________________________________________________
consensus TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
 
. : . : . : . : . : . :
rJMSF017N06+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMSF036N18+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMSF034D12+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMSF042C24+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMFF025J06+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
                      ____________________________________________________________
consensus AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
 
. : . : . : . : . : . :
rJMSF017N06+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMSF036N18+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMSF034D12+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMSF042C24+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMFF025J06+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
                      ____________________________________________________________
consensus ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
 
. : . : . : . : . : . :
rJMSF017N06+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMSF036N18+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMSF034D12+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMSF042C24+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMFF025J06+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
                      ____________________________________________________________
consensus ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
 
. : . : . : . : . : . :
rJMSF017N06+ CTGAGTTG
rJMSF036N18+ CTGAGTTGTAAAAGATACGGAGTACT
rJMSF034D12+ CTGAGTTGTAAAAGATACGGAGTACTTGGTACTTTT
rJMSF042C24+ CTGAGT
rJMFF025J06+ CTGAGTTGTAAAAGATACGGAGTACTTGGTACTTTTTAAAGCTTGTTTCTAGACGAGAAA
                      ____________________________________________________________
consensus CTGAGTTGTAAAAGATACGGAGTACTTGGTACTTTTTAAAGCTTGTTTCTAGACGAGAAA