| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF025J06 | Sequence | 596 | 009277 (6) | dbj|BAO57286.1| | 2e-123 | V-type proton ATPase subunit [Ipomoea nil] | 784 | 013724 (5) | dbj|BAO57286.1| | 5e-102 | V-type proton ATPase subunit [Ipomoea nil] |
| JMSF017N06 | Sequence | 529 | 009277 (6) | dbj|BAO57286.1| | 4e-90 | V-type proton ATPase subunit [Ipomoea nil] | 775 | 013724 (5) | dbj|BAO57286.1| | 2e-109 | V-type proton ATPase subunit [Ipomoea nil] |
| JMSF034D12 | Sequence | 690 | 009277 (6) | dbj|BAO57286.1| | 6e-129 | V-type proton ATPase subunit [Ipomoea nil] | 752 | 013724 (5) | dbj|BAO57286.1| | 3e-98 | V-type proton ATPase subunit [Ipomoea nil] |
| JMSF036N18 | Sequence | 666 | 009277 (6) | dbj|BAO57286.1| | 4e-107 | V-type proton ATPase subunit [Ipomoea nil] | 681 | 013724 (5) | dbj|BAO57286.1| | 2e-84 | V-type proton ATPase subunit [Ipomoea nil] |
| JMSF042C24 | Sequence | 309 | 009277 (6) | dbj|BAO57286.1| | 8e-35 | V-type proton ATPase subunit [Ipomoea nil] | 777 | 013724 (5) | dbj|BAO57286.1| | 9e-102 | V-type proton ATPase subunit [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMSF017N06+ TNGGCTAGCTATGAGACACTCACTTCCTATGTGGTTCC
rJMSF042C24+ CC
rJMFF025J06+ TTCC
____________________________________________________________
consensus TNGGCTAGCTATGAGACACTCACTTCCTATGTGGTTCC
. : . : . : . : . : . :
rJMSF017N06+ CAGATCCTNTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
rJMSF034D12+ AGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
rJMSF042C24+ CAGATCCTCTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
rJMFF025J06+ CAGATCCTCTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
____________________________________________________________
consensus CAGATCCTCTAAGAAGCTGTATGAGGACAATGAGTATGCTCTTTATACTGTAACGTTATT
. : . : . : . : . : . :
rJMSF017N06+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMSF036N18+ GTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMSF034D12+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMSF042C24+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
rJMFF025J06+ CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
____________________________________________________________
consensus CACTCGTGATGCTGACAATTTTAGGATTAAGGCACGTGAAAGAGGCTTCCAAATTCGTGA
. : . : . : . : . : . :
rJMSF017N06+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMSF036N18+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMSF034D12+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMSF042C24+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
rJMFF025J06+ TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
____________________________________________________________
consensus TTTTGAGTATAATCCTGAAACACATGAAAGTCGGAAACAAGAGCTGGAAAAACTGATGCA
. : . : . : . : . : . :
rJMSF017N06+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMSF036N18+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMSF034D12+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMSF042C24+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
rJMFF025J06+ GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
____________________________________________________________
consensus GGACCAAGAAACATTCCGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTATGGGGAGGT
. : . : . : . : . : . :
rJMSF017N06+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMSF036N18+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMSF034D12+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMSF042C24+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
rJMFF025J06+ TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
____________________________________________________________
consensus TTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCTGAAAGCATTCTGAGATA
. : . : . : . : . : . :
rJMSF017N06+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMSF036N18+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMSF034D12+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMSF042C24+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
rJMFF025J06+ TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
____________________________________________________________
consensus TGGCTTACCTCCATCCTTCTTGTCTGTTGTCTTATCACCATCGGTGAAAAGTGAGAAGAG
. : . : . : . : . : . :
rJMSF017N06+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMSF036N18+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMSF034D12+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMSF042C24+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
rJMFF025J06+ AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
____________________________________________________________
consensus AGTGCGGTCAATTCTGGAGTCACTCTGTGACAGTTCAAACAGCACCTACTGGAAAACTGA
. : . : . : . : . : . :
rJMSF017N06+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMSF036N18+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMSF034D12+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMSF042C24+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
rJMFF025J06+ GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
____________________________________________________________
consensus GGACGAAGGAGCTGTTGGTGCTTTCGGAGGTGATGCGGAGGTGCACCCTTACGTCTCCTT
. : . : . : . : . : . :
rJMSF017N06+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAACATCTATCCATTTCACTTATT
rJMSF036N18+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
rJMSF034D12+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
rJMSF042C24+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAACATCTATCCATTTCACTTATT
rJMFF025J06+ TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
____________________________________________________________
consensus TACAATAAATCTTGTTTGAGAAGGCATTCCATTATCTAATATCTATCCATTTCACTTATT
. : . : . : . : . : . :
rJMSF017N06+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMSF036N18+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMSF034D12+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMSF042C24+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
rJMFF025J06+ AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
____________________________________________________________
consensus AGTGATTTGATTTCTACCAATAAAGGACAGATTATGTGTTTGTATATGCTACTTTTAATA
. : . : . : . : . : . :
rJMSF017N06+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMSF036N18+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMSF034D12+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMSF042C24+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
rJMFF025J06+ ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
____________________________________________________________
consensus ATAATCCTTGTTCCAGTCTCCTTTTTTGGTGATTCTATTTTCACGAGGCCTGTAAACTGA
. : . : . : . : . : . :
rJMSF017N06+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMSF036N18+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMSF034D12+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMSF042C24+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
rJMFF025J06+ ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
____________________________________________________________
consensus ACTAAGTTAAACCTTCCCCTCCCAAGCATTGTTTCAAGTAGATTTATTTTTGTATATTTA
. : . : . : . : . : . :
rJMSF017N06+ CTGAGTTG
rJMSF036N18+ CTGAGTTGTAAAAGATACGGAGTACT
rJMSF034D12+ CTGAGTTGTAAAAGATACGGAGTACTTGGTACTTTT
rJMSF042C24+ CTGAGT
rJMFF025J06+ CTGAGTTGTAAAAGATACGGAGTACTTGGTACTTTTTAAAGCTTGTTTCTAGACGAGAAA
____________________________________________________________
consensus CTGAGTTGTAAAAGATACGGAGTACTTGGTACTTTTTAAAGCTTGTTTCTAGACGAGAAA