| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006E07 | Sequence | 684 | 013723 (3) | ref|XP_009795552.1| | 2e-61 | PREDICTED: ran-specific GTPase-activating protein 2-like [Nicotiana sylvestris] | |||||
| JMFF025B23 | Sequence | 573 | 006456 (2) | ref|XP_011002698.1| | 1e-31 | PREDICTED: nuclear pore complex protein NUP50B [Populus euphratica] | 759 | 013723 (3) | dbj|BAO49701.1| | 6e-74 | nuclear pore complex protein Nup50a [Nicotiana benthamiana] |
| JMSF015A09 | Sequence | 230 | 006456 (2) | ref|XP_002299634.1| | 2e-10 | Ran-binding protein 1 domain-containing [Populus trichocarpa] gb|EEE84439.1| Ran | 735 | 013723 (3) | dbj|BAO49701.1| | 5e-75 | nuclear pore complex protein Nup50a [Nicotiana benthamiana] |
This contig is upended
. : . : . : . : . : . :
rJMSF015A09+ TTTGGAGTGAAAAGTGATCAGCCTTCTTTCAGTTTTGGTAGT
rJMFF025B23+ TGGAGTGAAAAGTGATCAGCCTTCTTTCAGTTTTGGTAGT
____________________________________________________________
consensus TTTGGAGTGAAAAGTGATCAGCCTTCTTTCAGTTTTGGTAGT
. : . : . : . : . : . :
rJMSF015A09+ TCTAATAATGGGAGTGTTTCCCTTTTTGGTAACTCGGGGACATCCGCTGTCACTAAGTCT
rJMFF006E07+ CGGGGACATCCGCTGTCACTAAGTCT
rJMFF025B23+ TCTAATAATGGGAGTGTTTCCCTTTTTGGTAACTCGGGGACATCCGCTGTCACTAAGTCT
____________________________________________________________
consensus TCTAATAATGGGAGTGTTTCCCTTTTTGGTAACTCGGGGACATCCGCTGTCACTAAGTCT
. : . : . : . : . : . :
rJMSF015A09+ GAAGGGGCTGCTGGGTTCCCTTCGATGCAGGAGGTTTCAGTTGAAACAGGAGAGGAGAAT
rJMFF006E07+ GAAGGGGCTGCTGGGTTCCCTTCGATGCAGGAGGTTTCAGTNGAAACAGGAGAGGAGAAT
rJMFF025B23+ GAAGGGGCTGCTGGGTTCCCTTCGATGCAGGAGGTTTCAGTTGAAACAGGAGAGGAGAAT
____________________________________________________________
consensus GAAGGGGCTGCTGGGTTCCCTTCGATGCAGGAGGTTTCAGTTGAAACAGGAGAGGAGAAT
. : . : . : . : . : . :
rJMSF015A09+ GAGAAGCCCGTGTTTACAGCTGATTCTGTGTTATTTGAATATCTTGATGGAGGGTGGAAG
rJMFF006E07+ GAGAAGCCCNTGTTTACAGCTGATTNTGTGTTANTTGAATATCTTGATGGAGGGTGGAAG
rJMFF025B23+ GAGAAGCCCGTGTTTACAGCTGATTCTGTGTTATTTGAATATCTTGATGGAGGGTGGAAG
____________________________________________________________
consensus GAGAAGCCCGTGTTTACAGCTGATTCTGTGTTATTTGAATATCTTGATGGAGGGTGGAAG
. : . : . : . : . : . :
rJMSF015A09+ GAGCGGGGGAAGGGAGAAATCAAGGTGAATGTGTGTACAACAGAAGTGAAAAAAGCTAGA
rJMFF006E07+ GAGCGGGGGAAGGGAGAAATCAAGGTGAATGTGTGTACAACAGAAGTGAAAAAAGCTAGA
rJMFF025B23+ GAGCGGGGGAAGGGAGAAATCAAGGTGAATGTGTGTACAACAGAAGTGAAAAAAGCTAGA
____________________________________________________________
consensus GAGCGGGGGAAGGGAGAAATCAAGGTGAATGTGTGTACAACAGAAGTGAAAAAAGCTAGA
. : . : . : . : . : . :
rJMSF015A09+ CTGGTTATGAGATCCAAAGGAAATTATCGATTGATTTTGAATGCTAATCTATTTCCTGAA
rJMFF006E07+ CTGGTTATGAGATCCAAAGGAAATTATCGATTGATTTTGAATGCTAATCTATNTCCTGAA
rJMFF025B23+ CTGGTTATGAGATCCAAAGGAAATTATCGATTGATTTTGAATGCTAATCTATTTCCTGAA
____________________________________________________________
consensus CTGGTTATGAGATCCAAAGGAAATTATCGATTGATTTTGAATGCTAATCTATTTCCTGAA
. : . : . : . : . : . :
rJMSF015A09+ ATGAAGCTGGCAAATATGGACAAAAAAGGGATCACATTCTCGTGTGTGAATAGTGCTAGT
rJMFF006E07+ ATGAAGCNGGCAAATATGGACAAAAAAGGGATCACATTCTCGTGTGTGAATAGTGCTAGT
rJMFF025B23+ ATGAAGCTGGCAAATATGGACAAAAAAGGGATCACATTCTCGTGTGTGAATAGTGCTAGT
____________________________________________________________
consensus ATGAAGCTGGCAAATATGGACAAAAAAGGGATCACATTCTCGTGTGTGAATAGTGCTAGT
. : . : . : . : . : . :
rJMSF015A09+ GAAACAAGCGAGAAGCTGGCTACATTTGCTCTAAAATTCAAAGATGCTTCAATTGTTGAA
rJMFF006E07+ GAAACAAGCGAGAAGCTGGCTACATTTGCTNTAAAATTCAAAGATGCTTCAATTGTTGAA
rJMFF025B23+ GAAACAAGCGAGAAGCTGGCTACATTTGCTCTAAAATTCAAAGATGCTTCAATTGTTGAA
____________________________________________________________
consensus GAAACAAGCGAGAAGCTGGCTACATTTGCTCTAAAATTCAAAGATGCTTCAATTGTTGAA
. : . : . : . : . : . :
rJMSF015A09+ GAGTTTCGAGCTGCGGTGGTGGAGCATAAAGGTGGGACTCCTGCTGCTGCT-GCTTCTTC
rJMFF006E07+ GAGTTTCGAGCTGCGGTGGTGGAGCATAAAGGTGGGACTCCTGCTGCTGCTCGCTTCTTC
rJMFF025B23+ GAGTTTCGAGCTGCGGTGGTGGAGCATAAAGGTGGGACTCCTGCTGCTGCT-GCTTCTTC
____________________________________________________________
consensus GAGTTTCGAGCTGCGGTGGTGGAGCATAAAGGTGGGACTCCTGCTGCTGCT-GCTTCTTC
. : . : . : . : . : . :
rJMSF015A09+ TCTAAAGACACCTGAAAACTCACCTAAGGCTGCTGAGGTCTAAAGAACCACTTGGCCACG
rJMFF006E07+ TCTAAAGACACCTGAANACTCNCCTAAGGCTGNTGAGGTNTAAAGANCCNCTTGGCCNCG
rJMFF025B23+ TCTAAAGACACCTGAAAACTCACCTAAGGCTGCTGAGGTCTAAAGAACCACTTGGCCACG
____________________________________________________________
consensus TCTAAAGACACCTGAAAACTCACCTAAGGCTGCTGAGGTCTAAAGAACCACTTGGCCACG
. : . : . : . : . : . :
rJMSF015A09+ ATGATGTTGAGAGGATCCCATTTTCTTGAGTATGGAGGAGTGGAGGCAATTTGAGATAAA
rJMFF006E07+ ATGATGTNGAGAGGATCCCATTTTCTTGAGTATGGAGGAGTGGAGGCAATTTGAGATAAA
rJMFF025B23+ ATGATGTTGAGAGGATCCCATTTTCTTGAGTATGGAGGAGTGGAGGCAATTTGAGATAAA
____________________________________________________________
consensus ATGATGTTGAGAGGATCCCATTTTCTTGAGTATGGAGGAGTGGAGGCAATTTGAGATAAA
. : . : . : . : . : . :
rJMSF015A09+ CTACAGGGTACCCTTATTTTGATCTAAAAAAAGACTTTGTAGACCTAAATAGTAGTATTT
rJMFF006E07+ CTACAGGGTACCCTTATTTTGATCTAAAAAAAGACTTTGTAGACCTAAATAGTAGTATTT
rJMFF025B23+ CTACAGGGTACCCTTATTTTGATCTAAAAAAAGACTTTGTAGACCTAAATAGTAGTATTT
____________________________________________________________
consensus CTACAGGGTACCCTTATTTTGATCTAAAAAAAGACTTTGTAGACCTAAATAGTAGTATTT
. : . : . : . : . : . :
rJMSF015A09+ ACATTGGAGTCTTTTCTTGTTGATCTCATCCCAT
rJMFF006E07+ ACANTGGAGTCTTTTCTTGTTGATCTCATCCCATGTAGAACCTCAAACTTAACGACCC
rJMFF025B23+ ACATTGGAGTCTTTTCTTGTTGATCTCATCCCATGTAGAACCTCAAACTTAACGACCCAA
____________________________________________________________
consensus ACATTGGAGTCTTTTCTTGTTGATCTCATCCCATGTAGAACCTCAAACTTAACGACCCAA