| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024G19 | Sequence | 462 | 008013 (9) | ref|XP_009764650.1| | 6e-40 | PREDICTED: methyltransferase-like protein 1 isoform X2 [Nicotiana sylvestris] | 716 | 013718 (3) | emb|CDO99762.1| | 7e-95 | unnamed protein product [Coffea canephora] |
| JMSF015B13 | Sequence | 446 | 008013 (9) | ref|XP_009784100.1| | 2e-06 | PREDICTED: methyltransferase-like protein 1 [Nicotiana sylvestris] ref|XP_009784 | 794 | 013718 (3) | emb|CDO99762.1| | 8e-121 | unnamed protein product [Coffea canephora] |
| JMSF041D22 | Sequence | 746 | 008013 (9) | ref|XP_009764650.1| | 4e-28 | PREDICTED: methyltransferase-like protein 1 isoform X2 [Nicotiana sylvestris] | 639 | 013718 (3) | emb|CDO99762.1| | 1e-85 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF015B13+ GCACTGCTTGATGGNCATTAAGGGAACTGTT
____________________________________________________________
consensus GCACTGCTTGATGGNCATTAAGGGAACTGTT
. : . : . : . : . : . :
rJMSF015B13+ CGTCGCAGTACAGATGGCCATATAATTCATGCCAACATTGATACTGATGTAATTATTGCT
____________________________________________________________
consensus CGTCGCAGTACAGATGGCCATATAATTCATGCCAACATTGATACTGATGTAATTATTGCT
. : . : . : . : . : . :
rJMSF041D22+ GAATAATTGAGCAT
rJMSF015B13+ GAGGAGCCTCCGTATGGATCGACTGCAAAGCCTGAAGATATGTACCGAATAATTGAGCAT
rJMFF024G19+ AGCCTCCGTATGGATCGACTGCAAAGCCTGAAGATATGTACNGAATAATTGAGCAT
____________________________________________________________
consensus GAGGAGCCTCCGTATGGATCGACTGCAAAGCCTGAAGATATGTACCGAATAATTGAGCAT
. : . : . : . : . : . :
rJMSF041D22+ TTTGCTCTTGGCCGGAGAAGGCTTGAGCTCTTTGGTGAAGACCATAACATTCGGACAGGC
rJMSF015B13+ TTTGCTCTTGGCCGGAGAAGGCTTGAGCTCTTTGGTGAAGACCATAACATTCGGACAGGC
rJMFF024G19+ TTTGCTCTTGGCCGGAGAAGGCTTGAGCTCTTTGGTGAAGACCATAACATTCGGACAGGC
____________________________________________________________
consensus TTTGCTCTTGGCCGGAGAAGGCTTGAGCTCTTTGGTGAAGACCATAACATTCGGACAGGC
. : . : . : . : . : . :
rJMSF041D22+ TGGTTAACTGTTGGTAAAGGGTTATCTTCATCGAATTTTAATGCTGAGGCTTATGTGCGG
rJMSF015B13+ TGGTTAACTGTTGGTAAAGGGTTATCTTCATCGAATTTTAATGCTGAGGCTTATGTGCGG
rJMFF024G19+ TGGTTAACTGTTGGTAAAGGGTTATCTTCATCGAATTTTAATGCTGAGGCTTATGTGCGG
____________________________________________________________
consensus TGGTTAACTGTTGGTAAAGGGTTATCTTCATCGAATTTTAATGCTGAGGCTTATGTGCGG
. : . : . : . : . : . :
rJMSF041D22+ AATTTCGCTGATAAGGATGGGAAAGTTTGGCAGGGTGGAGGAGGAAGAAACCCACCACCC
rJMSF015B13+ AATTTCGCTGATAAGGATGGGAAAGTTTGGCAGGGTGGAGGAGGAAGAAACCCACCACCC
rJMFF024G19+ AATTTCGCTGATAAGGATGGGAAAGTTTGGCAGGGTGGAGGAGGAAGAAACCCACCACCC
____________________________________________________________
consensus AATTTCGCTGATAAGGATGGGAAAGTTTGGCAGGGTGGAGGAGGAAGAAACCCACCACCC
. : . : . : . : . : . :
rJMSF041D22+ GACGCACCTCATCTTGTTGTGACAACCCCCGAAATAGAATCCCTTAGACCAAAGTCGCCT
rJMSF015B13+ GACGCACCTCATCTTGTTGTGACAACCCCCGAAATAGAATCCCTTAGACCAAAGTCGCCT
rJMFF024G19+ GACGCACCTCATCTTGTTGTGACAACCCCCGAAATAGAATCCCTTAGACCAAAGTCGCCT
____________________________________________________________
consensus GACGCACCTCATCTTGTTGTGACAACCCCCGAAATAGAATCCCTTAGACCAAAGTCGCCT
. : . : . : . : . : . :
rJMSF041D22+ ATGAAGAATCAACAGCAAATGCAGCAGCAGCAGTCGACTTCCATATCTCTGACAACAGCC
rJMSF015B13+ ATGAAGAATCAACAGCAAATGCAGCAGCAGCAGTCGACTTCCATATCTCTGACAACAGCC
rJMFF024G19+ ATGAAGAATCAACAGCAAATGCAGCAGCAGCAGTCGACTTCCATATCTCTGACAACAGCC
____________________________________________________________
consensus ATGAAGAATCAACAGCAAATGCAGCAGCAGCAGTCGACTTCCATATCTCTGACAACAGCC
. : . : . : . : . : . :
rJMSF041D22+ ACCTCCAGCAACAAGCGGCCGACTGGAAATTCTCCCCAAAATCACAATCCACAAAACGCG
rJMSF015B13+ ACCTCCAGCAACAAGCGGCCGACTGGAAATTCTCCCCAAAATCACAATCCACAAAACGCG
rJMFF024G19+ ACCTCCAGCAACAAGCGGCCGACTGGAAATTCTCCCCAAAATCACAATCCACAAAACGCG
____________________________________________________________
consensus ACCTCCAGCAACAAGCGGCCGACTGGAAATTCTCCCCAAAATCACAATCCACAAAACGCG
. : . : . : . : . : . :
rJMSF041D22+ AACCAAGAAGCCTCTAGCTCTAACATATCGAACCAAGGTGGTCCCTGGGCGTCGCCTATG
rJMSF015B13+ AACCAAGAAGCCTCTAGCTCTAACATATCGAACCAAGGTGGTCCCTGGGCGTCGCCTATG
rJMFF024G19+ AACCAAGAAGCCTCTAGCTCTAACATATCGAACCAAGGTGGTCCCTGGGCGTCGCCTATG
____________________________________________________________
consensus AACCAAGAAGCCTCTAGCTCTAACATATCGAACCAAGGTGGTCCCTGGGCGTCGCCTATG
. : . : . : . : . : . :
rJMSF041D22+ GAAGGTTTTAGAGGAAGGGAAGGTGGACAGATGACAGACGATAGGATTCTTGATATGTAT
rJMSF015B13+ GAAGGTTTTAGAGGAAGGGAAGGTGGACAGATGACAGACGATAGGATTCTTGATATGTAT
rJMFF024G19+ GAAGGTTTTAGAGGAAGGGAAGGTGGACAGATGACAGACGATAGGATTCTTGATATGTAT
____________________________________________________________
consensus GAAGGTTTTAGAGGAAGGGAAGGTGGACAGATGACAGACGATAGGATTCTTGATATGTAT
. : . : . : . : . : . :
rJMSF041D22+ GCATACAATGCATCTTTCGGACAGGTTAACCCCGAGTTCTTGGATTACGAACCTCATAGA
rJMSF015B13+ GCATACAATGCATCTTTCGGACAGGTTAACCCCGAGTTCTTGGATTACGAACCTCATAGA
rJMFF024G19+ GCATACAATGCATCTTTCGGACAGGTTAACCCCGAGTTCTTGGATTACGAACCTCATAGA
____________________________________________________________
consensus GCATACAATGCATCTTTCGGACAGGTTAACCCCGAGTTCTTGGATTACGAACCTCATAGA
. : . : . : . : . : . :
rJMSF041D22+ GCAATGAATATGTAGCGAAATAACGCATCAGATGCCACCTTGTATTCTTCATTTTCCTTG
rJMSF015B13+ GCAATGAATATGTAGCGAAATAACGCATCAGATGCCACCTTGTATTCTTCATTTTCCTTG
rJMFF024G19+ GCAATGAATATGTAGCGAAATAACGCATCAGATGCCACCTTGTATTCTTCATTTTCCTTG
____________________________________________________________
consensus GCAATGAATATGTAGCGAAATAACGCATCAGATGCCACCTTGTATTCTTCATTTTCCTTG
. : . : . : . : . : . :
rJMSF041D22+ TACACAAAAGACA
rJMSF015B13+ TACACAAAAGACATAAACGGCAGGGGAATAGCTTCAAATTTTT
rJMFF024G19+ TACACAAAAGACATAAACGGCAGGGGAATAGCTTCAAATTTTTGTCTTTCTTCACTAGTT
____________________________________________________________
consensus TACACAAAAGACATAAACGGCAGGGGAATAGCTTCAAATTTTTGTCTTTCTTCACTAGTT