Contig 013717:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024E04Sequence231005972 (3)746013717 (2)emb|CDP20376.1|3e-99unnamed protein product [Coffea canephora]
JMFF039P21Sequence585022763ref|XP_004240097.1|1e-74PREDICTED: probable polygalacturonase [Solanum lycopersicum]738013717 (2)ref|XP_009762711.1|2e-102PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF039P21+                 GAATTGAGGACAANCTACATAGTGTCGGGAGATGATTGTGTGGCAATTAAAAG
rJMFF024E04+                                            GGAGATGATTGTGTGGCAATTAAAAG
                      ____________________________________________________________
consensus                    GAATTGAGGACAANCTACATAGTGTCGGGAGATGATTGTGTGGCAATTAAAAG
 
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rJMFF039P21+          CGGTATTGATGAATACGGTATAAAGTACGGTATGCCCACCAAACAGTTGATCATCAGACG
rJMFF024E04+          CGGTATTGATGAATACGGTATAAAGTACGGTATGCCCACCAAACAGTTGATCATCAGACG
                      ____________________________________________________________
consensus             CGGTATTGATGAATACGGTATAAAGTACGGTATGCCCACCAAACAGTTGATCATCAGACG
 
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rJMFF039P21+          CCTCACCTGCATCTCTCCCACCAGCGGCGCAATAGCAATGGGAAGTGAAATGTCCGGTGG
rJMFF024E04+          CCTCACCTGCATCTCTCCCACCAGCGGCGCAATAGCAATGGGAAGTGAAATGTCCGGTGG
                      ____________________________________________________________
consensus             CCTCACCTGCATCTCTCCCACCAGCGGCGCAATAGCAATGGGAAGTGAAATGTCCGGTGG
 
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rJMFF039P21+          GATTGAAGACGTCAGGGCCTCCGACATCACCGCCCTCGACACGGAGTCAGGGGTGAGGAT
rJMFF024E04+          GATTGAAGACGTCAGGGCCTCCGACATCACCGCCCTCGACACGGAGTCAGGGGTGAGGAT
                      ____________________________________________________________
consensus             GATTGAAGACGTCAGGGCCTCCGACATCACCGCCCTCGACACGGAGTCAGGGGTGAGGAT
 
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rJMFF039P21+          CAAGACCGCCCTCGGCCGCGGCGGCTACGTCAAGAATATATACGTCAAGGGATTGAGAGC
rJMFF024E04+          CAAGACCGCCCTCGGCCGCGGCGGCTACGTCAAGAATATATACGTCAAGGGATTGAGAGC
                      ____________________________________________________________
consensus             CAAGACCGCCCTCGGCCGCGGCGGCTACGTCAAGAATATATACGTCAAGGGATTGAGAGC
 
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rJMFF039P21+          GCACACCATGAAATTGTTGTTTCAGATGACTGGGAAGTACGGCTCCCACGCCGACAAAAA
rJMFF024E04+          GCACACCATGAAATTGTTGTTTCAGATGACTGGGAAGTACGGCTCCCACGCCGACAAAAA
                      ____________________________________________________________
consensus             GCACACCATGAAATTGTTGTTTCAGATGACTGGGAAGTACGGCTCCCACGCCGACAAAAA
 
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rJMFF039P21+          TTTCGACCCGAAAGCGATTCCGGTGGTGGCGGGGATCAACTTCCGGGATGTGGTGGCGGA
rJMFF024E04+          TTTCGACCCGAAAGCGATTCCGGTGGTGGCGGGGATCAACTTCCGGGATGTGGTGGCGGA
                      ____________________________________________________________
consensus             TTTCGACCCGAAAGCGATTCCGGTGGTGGCGGGGATCAACTTCCGGGATGTGGTGGCGGA
 
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rJMFF039P21+          TAATGTGACGACGGCGGGCACGATGGAGGGAATCCCCGGCCACCCCTTCACCGGAATCTG
rJMFF024E04+          TAATGTGACGACGGCGGGCACGATGGAGGGAATCCCCGGCCACCCCTTCACCGGAATCTG
                      ____________________________________________________________
consensus             TAATGTGACGACGGCGGGCACGATGGAGGGAATCCCCGGCCACCCCTTCACCGGAATCTG
 
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rJMFF039P21+          CATGGCTAACGTCACCATAGGGATGGCAAAGAACGGCAAGAAGCAGCCGCCGTGGGTTTG
rJMFF024E04+          CATGGCTAACGTCACCATAGGGATGGCAAAGAACGGCAAGAAGCAGCCGCCGTGGGTTTG
                      ____________________________________________________________
consensus             CATGGCTAACGTCACCATAGGGATGGCAAAGAACGGCAAGAAGCAGCCGCCGTGGGTTTG
 
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rJMFF039P21+          TGCTAATATTCAAGGAGTGGCCAGTGGGGTGGTTCCCCCGCCATGCAATTTGTTGCATAG
rJMFF024E04+          TGCTAATATTCAAGGAGTGGCCAGTGGGGTGGTTCCCCCGCCATGCAATTTGTTGCATAG
                      ____________________________________________________________
consensus             TGCTAATATTCAAGGAGTGGCCAGTGGGGTGGTTCCCCCGCCATGCAATTTGTTGCATAG
 
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rJMFF039P21+          TCAGGGCCCAGTGAAGCCTGGAATGTGCGATTTGCCTGCCAAAAATGGATGAGAATTCAT
rJMFF024E04+          TCAGGGCCCAGTGAAGCCTGGAATGTGCGATTTGCCTGCCAAAAATGGATGAGAATTCAT
                      ____________________________________________________________
consensus             TCAGGGCCCAGTGAAGCCTGGAATGTGCGATTTGCCTGCCAAAAATGGATGAGAATTCAT
 
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rJMFF039P21+          ATGCTTTGCGGGGCTATTAATATAATATAATAATATTATGTCTTTTCATTAGTTATTCCA
rJMFF024E04+          ATGCTTTGCGGGGCTATTAATATAATATAATAATATTATGTCTTTTCATTAGTTATTCCA
                      ____________________________________________________________
consensus             ATGCTTTGCGGGGCTATTAATATAATATAATAATATTATGTCTTTTCATTAGTTATTCCA
 
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rJMFF039P21+          TTGAGTCTTAATAAAA                                            
rJMFF024E04+          TTGAGTCTTAATAAAATGAACAAGTCATTTATTTCGCTGATTATTTCTGATAAGAATAAC
                      ____________________________________________________________
consensus             TTGAGTCTTAATAAAATGAACAAGTCATTTATTTCGCTGATTATTTCTGATAAGAATAAC