Contig 013708:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022H20Sequence496012029 (3)ref|XP_009610915.1|9e-57PREDICTED: FRIGIDA-like protein 4a [Nicotiana tomentosiformis]691013708 (4)ref|XP_006360794.1|9e-24PREDICTED: FRIGIDA-like protein 4a-like [Solanum tuberosum]
JMFF036L11Sequence502013708 (4)ref|XP_006419936.1|4e-50hypothetical protein CICLE_v100047531mg, partial [Citrus clementina] gb|ESR33176
JMSF025M20Sequence583012029 (3)ref|XP_009610915.1|4e-56PREDICTED: FRIGIDA-like protein 4a [Nicotiana tomentosiformis]736013708 (4)ref|XP_006419936.1|1e-45hypothetical protein CICLE_v100047531mg, partial [Citrus clementina] gb|ESR33176
JMSF044E02Sequence567012029 (3)ref|XP_009784382.1|3e-56PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris]815013708 (4)ref|XP_006419936.1|7e-57hypothetical protein CICLE_v100047531mg, partial [Citrus clementina] gb|ESR33176

Alignment

This contig is upended


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rJMSF044E02+                                        TCAGCAGAGGACAGCAGNTAGATGCTGTGC
                      ____________________________________________________________
consensus                                           TCAGCAGAGGACAGCAGNTAGATGCTGTGC
 
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JMFF036L11+                                                  CCGTTCCTCTTCTGAAAGATT
rJMSF044E02+          ATTTCAGTTGTGAAGTTGGCCTTGTTGACAAATTCCCTCCCGTTCCTNTTTTGAAAGATT
                      ____________________________________________________________
consensus             ATTTCAGTTGTGAAGTTGGCCTTGTTGACAAATTCCCTCCCGTTCCTCTTTTGAAAGATT
 
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JMFF036L11+           TTCTGAAAGACGCGAAAAAATCTGCTGCTGCAATTCTTGAAGATCCTAGCAATTCTGGTC
rJMSF044E02+          TTNTGAAAGACGCGAAAAAATCTGCTGCTGCAATTCTTGAAGATCCTAGCAATTCTGGTC
rJMSF025M20+             TGAAAGACGCGAAAAAATCTGCTGCTGCAATTCTTGAAGATCCTAGCAATTCTGGTC
                      ____________________________________________________________
consensus             TTCTGAAAGACGCGAAAAAATCTGCTGCTGCAATTCTTGAAGATCCTAGCAATTCTGGTC
 
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JMFF036L11+           GAGCTGCGCACCTGGCTGCAAAGAAAGAGCTATCAGCTGTTCGTTCGGTCCTCAAGTGCA
rJMSF044E02+          GAGCTGCGCACCTGGCTGCAAAGAAAGAGCTATCAGCTGTTCGTTCGGTCCTCAAGTGCA
rJMSF025M20+          GAGCTGCGCACCTGGCTGCAAAGAAAGAGCTATCAGCTGTTCGTTCGGTCCTCAAGTGCA
                      ____________________________________________________________
consensus             GAGCTGCGCACCTGGCTGCAAAGAAAGAGCTATCAGCTGTTCGTTCGGTCCTCAAGTGCA
 
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JMFF036L11+           TTGAAGAGTACAAACTCGAAGCTGAGTTCCCTCCCGAAAACCTCAAAAAGCGCCTCGAGG
rJMSF044E02+          TTGAAGAGTACAAACTCGAAGCTGAGTTCCCTCCCGAAAACCTCAAAAAGCGCCTCGAGG
rJMSF025M20+          TTGAAGAGTACAAACTCGAAGCTGAGTTCCCTCCCGAAAACCTCAAAAAGCGCCTCGAGG
rJMFF022H20+                                         TCCCGAAAACCTCAAAAAGCGCCTCGAGG
                      ____________________________________________________________
consensus             TTGAAGAGTACAAACTCGAAGCTGAGTTCCCTCCCGAAAACCTCAAAAAGCGCCTCGAGG
 
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JMFF036L11+           AGTTGGAGAAGTCCAAGACTGAGAAAAAGAAGACAGCAGCAACCACCGCCACTGCAGCCC
rJMSF044E02+          AGTTGGAGAAGTCCAAGACTGAGAAAAAGAAGACAGCAGCAACCACCGCCACTGCAGCCC
rJMSF025M20+          AGTTGGAGAAGTCCAAGACTGAGAAAAAGAAGACAGCAGCAACCACCGCCACTGCAGCCC
rJMFF022H20+          AGTTGGAGAAGTCCAAGACTGAGAAAAAGAAGACAGCAGCAACCACCGCCACTGCAGCCC
                      ____________________________________________________________
consensus             AGTTGGAGAAGTCCAAGACTGAGAAAAAGAAGACAGCAGCAACCACCGCCACTGCAGCCC
 
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JMFF036L11+           CTGCGAACAAACGTACACGCGTCAACAATGGAGGCCCAATGCCCCCAGCCAAGGCTGGCC
rJMSF044E02+          CTGCGAACAAACGTACACGCGTCAACAATGGAGGCCCAATGCCCCCAGCCAAGGCTGGCC
rJMSF025M20+          CTGCGAACAAACGTACACGCGTCAACAATGGAGGCCCAATGCCCCCAGCCAAGGCTGGCC
rJMFF022H20+          CTGCGAACAAACGTACACGCGTCAACAATGGAGGCCCAATGCCCCCAGCCAAGGCTGGCC
                      ____________________________________________________________
consensus             CTGCGAACAAACGTACACGCGTCAACAATGGAGGCCCAATGCCCCCAGCCAAGGCTGGCC
 
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JMFF036L11+           GCTCGACCAATGCTTACGTATCTTCTTTCCCATCAGCTCCCGCGTTTGTCAGGTCACCTC
rJMSF044E02+          GCTCGACCAATGCTTACGTATCTTCTTTCCCATCAGCTCCCGCGTTTGTCAGGTCACCTC
rJMSF025M20+          GCTCGACCAATGCTTACGTATCTTCTTTCCCATCAGCTCCCGCGTTTGTCAGGTCACCTC
rJMFF022H20+          GCTCGACCAATGCTTACGTATCTTCTTTCCCATCAGCTCCCGCGTTTGTCAGGTCACCTC
                      ____________________________________________________________
consensus             GCTCGACCAATGCTTACGTATCTTCTTTCCCATCAGCTCCCGCGTTTGTCAGGTCACCTC
 
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JMFF036L11+           CACACACCCAATACCCTGTCGGAGTCCCAGCCTACCCGACATCTCCAGCCATGTATGTCC
rJMSF044E02+          CACACACCCAATACCCTGTCGGAGTCCCAGCCTACCCGACATCTCCAGCCATGTATGTCC
rJMSF025M20+          CACACACCCAATACCCTGTCGGAGTCCCAGCCTACCCGACATCTCCAGCCATGTATGTCC
rJMFF022H20+          CACACACCCAATACCCTGTCGGAGTCCCAGCCTACCCGACATCTCCAGCCATGTATGTCC
                      ____________________________________________________________
consensus             CACACACCCAATACCCTGTCGGAGTCCCAGCCTACCCGACATCTCCAGCCATGTATGTCC
 
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JMFF036L11+           ACGGGGGAAGCAGAAGTCCCCCGTATGTGTACTCCCCCGAAGCTGCTCCTTACC      
rJMSF044E02+          ACGGGGGAAGCAGAAGTCCCCCGTATGTGTACTCCCCCGAAGCTGCTCCTTACCCAGGCT
rJMSF025M20+          ACGGGGGAAGCAGAAGTCCCCCGTATGTGTACTCCCCCGAAGCTGCTCCTTACCCAGGCT
rJMFF022H20+          ACGGGGGAAGCAGAAGTCCCCCGTATGTGTACTCCCCCGAAGCTGCTCCTTACCCAGGCT
                      ____________________________________________________________
consensus             ACGGGGGAAGCAGAAGTCCCCCGTATGTGTACTCCCCCGAAGCTGCTCCTTACCCAGGCT
 
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rJMSF044E02+          CCCCCTACTCACCATACGGAGGCTACAGCAATGCCGTGTCACCAGCTTACCATCAAGCTT
rJMSF025M20+          CCCCCTACTCACCATACGGAGGCTACAGCAATGCCGTGTCACCAGCTTACCATCAAGCTT
rJMFF022H20+          CCCCCTACTCACCATACGGAGGCTACAGCAATGCCGTGTCACCAGCTTACCATCAAGCTT
                      ____________________________________________________________
consensus             CCCCCTACTCACCATACGGAGGCTACAGCAATGCCGTGTCACCAGCTTACCATCAAGCTT
 
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rJMSF044E02+          ACTACTGATAGAAGACGACATAACTGCCCGGGTTAAATATGGTGACTACTAATATCATGA
rJMSF025M20+          ACTACTGATAGAAGACGACATAACTGCCCGGGTTAAATATGGTGACTACTAATATCATGA
rJMFF022H20+          ACTACTGATAGAAGACGACATAACTGCCCGGGTTAAATATGGTGACTACTAATATCATGA
                      ____________________________________________________________
consensus             ACTACTGATAGAAGACGACATAACTGCCCGGGTTAAATATGGTGACTACTAATATCATGA
 
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rJMSF044E02+          CGCGATCTAAATGTCTTTTAAATGGTTTGTAATCGCTAACTGTAATGGTAGATTTGTGCT
rJMSF025M20+          CGCGATCTAAATGTCTTTTAAATGGTTTGTAATCGCTAACTGTAATGGTAGATTTGTGCT
rJMFF022H20+          CGCGATCTAAATGTCTTTTAAATGGTTTGTAATCGCTAACTGTAATGGTAGATTTGTGCT
                      ____________________________________________________________
consensus             CGCGATCTAAATGTCTTTTAAATGGTTTGTAATCGCTAACTGTAATGGTAGATTTGTGCT
 
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rJMSF044E02+          GTGTTAATCCTTAATATAGACATCTATAACTCTATTACTGATTCTTGCTTAGCAATGAGC
rJMSF025M20+          GTGTTAATCCTTAATATAGACATCTATAACTCTATTACTGATTCTTGCTTAGCAATGAGC
rJMFF022H20+          GTGTTAATCCTTAATATAGACATCTATAACTCTATTACTGATTCTTGCTTAGCAATGAGC
                      ____________________________________________________________
consensus             GTGTTAATCCTTAATATAGACATCTATAACTCTATTACTGATTCTTGCTTAGCAATGAGC
 
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rJMSF044E02+          AGGTT                                                       
rJMSF025M20+          AGGTT                                                       
rJMFF022H20+          AGGTTGTATTTCTGATGTGGATCAAGTAAGTAATACAGTAGGTGTTTTGTGCCAAACTAG
                      ____________________________________________________________
consensus             AGGTTGTATTTCTGATGTGGATCAAGTAAGTAATACAGTAGGTGTTTTGTGCCAAACTAG
 
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rJMFF022H20+          AAATGTGGAATATTTTCATCTGAATAACACAAGGAAGAAAAAGAAAGAAAAAATAAAAGG
                      ____________________________________________________________
consensus             AAATGTGGAATATTTTCATCTGAATAACACAAGGAAGAAAAAGAAAGAAAAAATAAAAGG