| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021C11 | Sequence | 556 | 013702 (6) | emb|CDP05307.1| | 3e-60 | unnamed protein product [Coffea canephora] | 457 | 013702 (6) | ref|XP_004234943.1| | 4e-14 | PREDICTED: chloride conductance regulatory protein ICln [Solanum lycopersicum] |
| JMFF030I15 | Sequence | 467 | 013702 (6) | emb|CDP05307.1| | 3e-51 | unnamed protein product [Coffea canephora] | 653 | 013702 (6) | ref|XP_004234943.1| | 1e-28 | PREDICTED: chloride conductance regulatory protein ICln [Solanum lycopersicum] |
| JMSF026A22 | Sequence | 644 | 013702 (6) | emb|CDP05307.1| | 4e-58 | unnamed protein product [Coffea canephora] | 721 | 013702 (6) | emb|CDP05307.1| | 2e-53 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFF021C11- AAGAGCATAACTAGCTGAGCAATTGGAACT
JMFF030I15- AAGAGCATAACTAGCTGAGCAATTGGAACT
JMSF026A22- GCTAGGCACGTTCATACAGCTCAAGAGCATAACTAGCTGAGCAATTGGAACT
____________________________________________________________
consensus GCTAGGCACGTTCATACAGCTCAAGAGCATAACTAGCTGAGCAATTGGAACT
. : . : . : . : . : . :
JMFF021C11- TCTGAATTGACCGGAATTTGGAAAATGGCCGGATTAAGAGTTGTTACCGATAGAACCCCC
JMFF030I15- TCTGAATTGACCGGAATTTGGAAAATGGCCGGATTAAGAGTTGTTACCGATAGAACCCCC
JMSF026A22- TCTGAATTGACCGGAATTTGGAAAATGGCCGGATTAAGAGTTGTTACCGATAGAACCCCC
____________________________________________________________
consensus TCTGAATTGACCGGAATTTGGAAAATGGCCGGATTAAGAGTTGTTACCGATAGAACCCCC
. : . : . : . : . : . :
JMFF021C11- GCCGGGCAACCGGCCCTCAACGCCGGTAACGGCGAGGAGCTCATGCACGTTCTTTCCGGC
JMFF030I15- GCCGGGCAACCGGCCCTCAACGCCGGTAACGGCGAGGAGCTCATGCACGTTCTTTCCGGC
JMSF026A22- GCCGGGCAACCGGCCCTCAACGCCGGTAACGGCGAGGAGCTCATGCACGTTCTTTCCGGC
____________________________________________________________
consensus GCCGGGCAACCGGCCCTCAACGCCGGTAACGGCGAGGAGCTCATGCACGTTCTTTCCGGC
. : . : . : . : . : . :
JMFF021C11- GTCTCGCTTGTGCTCGGCAACCGCCTTCCTCTTTCCCCCGGCACTCTTTACATCACCACC
JMFF030I15- GTCTCGCTTGTGCTCGGCAACCGCCTTCCTCTTTCCCCCGGCACTCTTTACATCACCACC
JMSF026A22- GTCTCGCTTGTGCTCGGCAACCGCCTTCCTCTTTCCCCCGGCACTCTTTACATCACCACC
rJMSF026A22+ CC
____________________________________________________________
consensus GTCTCGCTTGTGCTCGGCAACCGCCTTCCTCTTTCCCCCGGCACTCTTTACATCACCACC
. : . : . : . : . : . :
JMFF021C11- AGGAAAGTGGTGTGGTTGAGCGACACAGACAGAGAAAGAGGATATGCAGTCGATTTCTTG
JMFF030I15- AGGAAAGTGGTGTGGTTGAGCGACACAGACAGAGAAAGAGGATATGCAGTCGATTTCTTG
JMSF026A22- AGGAAAGTGGTGTGGTTGAGCGACACAGACAGAGAAAGAGGATATGCAGTCGATTTCTTG
rJMSF026A22+ AGGAAAGTGGTGTGGTTGAGCGACACAGNCAGAGAAAGAGGATATGCAGTCGATTTCTTG
____________________________________________________________
consensus AGGAAAGTGGTGTGGTTGAGCGACACAGACAGAGAAAGAGGATATGCAGTCGATTTCTTG
. : . : . : . : . : . :
JMFF021C11- AATATTTCACTCCATGCCGTGTCTAGAGACCCGGAATCTTACCCGTCTCCTTGTATATAT
JMFF030I15- AATATTTCACTCCATGCCGTGTCTAGAGACCCGGAATCTTACCCGTCTCCTTGTATATAT
JMSF026A22- AATATTTCACTCCATGCCGTGTCTAGAGACCCGGAATCTTACCCGTCTCCTTGTATATAT
rJMSF026A22+ AATATTTCACTCCATGCCGTGTCTAGAGACCCGGAATCTTACCCGTCTCCTTGTATATAT
rJMFF030I15+ TGTATATAT
____________________________________________________________
consensus AATATTTCACTCCATGCCGTGTCTAGAGACCCGGAATCTTACCCGTCTCCTTGTATATAT
. : . : . : . : . : . :
JMFF021C11- GCCCAGATTGATATTGGGGATGAGGATGATGATGATTCAGAGGGCTCTGATACTGAGTGT
JMFF030I15- GCCCAGATTGATATTGGGGATGAGGATGATGATGATTCAGAGGGCTCTGATACTGAGTGT
JMSF026A22- GCCCAGATTGATATTGGGGATGAGGATGATGATGATTCAGAGGGCTCTGATACTGAGTGT
rJMSF026A22+ GCCCAGATTGATATTGGGGATGAGGATGATGATGATTCAGAGGGCTCTGATACTGAGTGT
rJMFF030I15+ GCCCAGATNGATATTGGGGATGAGGATGATGATGATTCAGAGGGCTCTGATACTGAGTGT
____________________________________________________________
consensus GCCCAGATTGATATTGGGGATGAGGATGATGATGATTCAGAGGGCTCTGATACTGAGTGT
. : . : . : . : . : . :
JMFF021C11- AATGAGACATTAGAC-TTATCACGGATCACTGAGATGAGGGTTGTTCCATCAGATCCTAA
JMFF030I15- AATGAGACATTAGAC-TTATCACGGATCACTGAGATGAGGGTTGTTCCATCAGATCCTAA
JMSF026A22- AATGAGACATTAGAC-TTATCACGGATCACTGAGATGAGGGTTGTTCCATCAGATCCTAA
rJMSF026A22+ AATGAGACATTAGAC-TTATCACGGATCACTGAGATGAGGGTTGTTCCATCAGATCCTAA
rJMFF030I15+ AATGAGACATTAGACTTTATCACGGATCACTGAGATGAGGGTTGTTCCATCAGATCCTAA
____________________________________________________________
consensus AATGAGACATTAGAC-TTATCACGGATCACTGAGATGAGGGTTGTTCCATCAGATCCTAA
. : . : . : . : . : . :
JMFF021C11- TCAAGTGGATGCACTGTTTCAGATGTTTTGTGAATGTGCCGAGCTAAACCCTGAACCAAT
JMFF030I15- TCAAGTGGATGCACTGTT
JMSF026A22- TCAAGTGGATGCACTGTTTCAGATGTTTTGTGAATGTGCCGAGCTAAACCCTGAACCAAT
rJMSF026A22+ TCAAGTGGATGCACTGTTTCAGATGTTTTGTGAATGTGCCGAGCTAAACCCTGAACCAAT
rJMFF030I15+ TCAAGTGGATGCACTGTTTCAGATGTTTTGTGAATGTGCCGAGCTAAACCCTGAACCAAT
____________________________________________________________
consensus TCAAGTGGATGCACTGTTTCAGATGTTTTGTGAATGTGCCGAGCTAAACCCTGAACCAAT
. : . : . : . : . : . :
JMFF021C11- TGAAGAGGAGGAAGAAGAGCATAATTGGATTTTCAGTGCTGAGCAGT
JMSF026A22- TGAAGAGGAGGAAGAAGAGCATAATTGGATTTTCAGTGCTGAGCAGTTAGAAAATGAGGC
rJMSF026A22+ TGAAGAGGAGGAAGAAGAGCATAATTGGATTTTCAGTGCTGAGCAGTTAGAAAATGAGGC
rJMFF030I15+ TGAAGAGGAGGAAGAAGAGCATAATTGGATTTTCAGTGCTGAGCAGTTAGAAAATGAGGC
rJMFF021C11+ AATTGGATTTTCAGTGCTGAGCAGTTAGAAAANGAGGC
____________________________________________________________
consensus TGAAGAGGAGGAAGAAGAGCATAATTGGATTTTCAGTGCTGAGCAGTTAGAAAATGAGGC
. : . : . : . : . : . :
JMSF026A22- AGCAGANGAAGGGGAGGAAACTGAATGGATGGTTATGCAGAATGGCTCACATC
rJMSF026A22+ AGCAGAGGAAGGGGAGGAAACTGAATGGATGGTTATGCAGAATGGCTCACATCCAATTGG
rJMFF030I15+ AGCAGAGGAAGGGGAGGAAACTGAATGGATGGTTATGCAGAATGGCTCACATCCAATTGG
rJMFF021C11+ AGCAGAGGAAGGGGAGGAAACTGAATGGATGGTTATGCAGAATGGCTCACATCCAATTGG
____________________________________________________________
consensus AGCAGAGGAAGGGGAGGAAACTGAATGGATGGTTATGCAGAATGGCTCACATCCAATTGG
. : . : . : . : . : . :
rJMSF026A22+ TTGTTCTAATGAGGATCCTGACTTAGCTCATACAATTCTTCAGCTTCAAATTAACGATCA
rJMFF030I15+ TTGTTCTAATGAGGATCCTGACTTAGCTCATACAATTCTTCAGCTTCAAATTAACGATCA
rJMFF021C11+ TTGTTCTAATGAGGATCCTGACTTAGCTCATACAATTCTTCAGCTTCAAATTAACGATCA
____________________________________________________________
consensus TTGTTCTAATGAGGATCCTGACTTAGCTCATACAATTCTTCAGCTTCAAATTAACGATCA
. : . : . : . : . : . :
rJMSF026A22+ ACGGTTTGAGGATGCAGAAGAGATGGGTAGCGATAATCACAACCGGCAACACTGAGCTGT
rJMFF030I15+ ACGGTTTGAGGATGCAGAAGAGATGGATAGCGATAATCACAACCGGCAACACTGAGCTGT
rJMFF021C11+ ACGGTTTGAGGATGCAGAAGAGATGGATAGCGATAATCACAACCGGCAACACTGAGCTGT
____________________________________________________________
consensus ACGGTTTGAGGATGCAGAAGAGATGGATAGCGATAATCACAACCGGCAACACTGAGCTGT
. : . : . : . : . : . :
rJMSF026A22+ TACAGACCCAAACATTTGCATTCTGTAGTACCTGTCCTGTTATACGCTTCTGTTTTGGGT
rJMFF030I15+ TACAGACCCAAACATTTGCATTCTGTAGTACCTGTCCTGTTATACGCTTCTGTTTTGGGT
rJMFF021C11+ TACAGACCCAAACATTTGCATTCTGTAGTACCTGTCCTGTTATACGCTTCTGTTTTGGGT
____________________________________________________________
consensus TACAGACCCAAACATTTGCATTCTGTAGTACCTGTCCTGTTATACGCTTCTGTTTTGGGT
. : . : . : . : . : . :
rJMSF026A22+ GGTCTTGATGTGATCTCTATTTAGACGTGGGACTTTTGTGTATATTTGAGTTAGGAACCA
rJMFF030I15+ GGTCTTGATGTGATCTCTATTTAGACGTGGGACCTTTGTGTATATTTGAGTTAGGAACCA
rJMFF021C11+ GGTCTTGATGTGATCTCTATTTAGACGTGGGACCTTTGTGTATATTTGAGTTAGGAACCA
____________________________________________________________
consensus GGTCTTGATGTGATCTCTATTTAGACGTGGGACCTTTGTGTATATTTGAGTTAGGAACCA
. : . : . : . : . : . :
rJMSF026A22+ TGTAGGTTTTCGCAGGTCATGTTTGACCAGAATTGTCCTTAAAACTTTTATCC
rJMFF030I15+ TGTAGGTTTTCGTAGGTCATGTTTGA-CAGAATTGTCCTTAAAACTTTTATCCTTGTTTG
rJMFF021C11+ TGTAGGTTTTCGTAGGTCATGTTTGA-CAGAATTGTCCTTAAAACTTTTATCCTTGTTTG
____________________________________________________________
consensus TGTAGGTTTTCGTAGGTCATGTTTGA-CAGAATTGTCCTTAAAACTTTTATCCTTGTTTG
. : . : . : . : . : . :
rJMFF030I15+ TTACACATGCACGCAAGAATCTTGTGCTATGATGGGATCCTTAT
rJMFF021C11+ TTACACATGCACGCAAGAATCTTGTGCTATGATGGGATCCTTATTGAATTGAATTTCTGC
____________________________________________________________
consensus TTACACATGCACGCAAGAATCTTGTGCTATGATGGGATCCTTATTGAATTGAATTTCTGC