Contig 013700:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011F10Sequence632013700 (8)ref|XP_006298527.1|4e-32hypothetical protein CARUB_v10014604mg [Capsella rubella] gb|EOA31425.1| hypothe743013700 (8)gb|AAK77126.1|AF362730_16e-42succinate dehydrogenase subunit 3 [Solanum lycopersicum] dbj|BAD83440.2| succina
JMFF020J03Sequence482013700 (8)ref|XP_006298527.1|1e-14hypothetical protein CARUB_v10014604mg [Capsella rubella] gb|EOA31425.1| hypothe745013700 (8)gb|AAK77126.1|AF362730_16e-42succinate dehydrogenase subunit 3 [Solanum lycopersicum] dbj|BAD83440.2| succina
JMFN003E04Sequence639013700 (8)ref|XP_006298527.1|2e-32hypothetical protein CARUB_v10014604mg [Capsella rubella] gb|EOA31425.1| hypothe
JMFN041J15Sequence632013700 (8)ref|XP_006298527.1|2e-32hypothetical protein CARUB_v10014604mg [Capsella rubella] gb|EOA31425.1| hypothe
JMSF013I22Sequence236013011 (2)745013700 (8)gb|AAK77126.1|AF362730_15e-42succinate dehydrogenase subunit 3 [Solanum lycopersicum] dbj|BAD83440.2| succina
JMSF027M01Sequence668022139ref|XP_006298527.1|7e-23hypothetical protein CARUB_v10014604mg [Capsella rubella] gb|EOA31425.1| hypothe743013700 (8)gb|AAK77126.1|AF362730_15e-42succinate dehydrogenase subunit 3 [Solanum lycopersicum] dbj|BAD83440.2| succina

Alignment

This contig is upended


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JMFF020J03-                                                                  CACAT
JMFF011F10-                                                                   ACAT
                      ____________________________________________________________
consensus                                                                    CACAT
 
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JMFF020J03-           ACCTCACGGGAGCAAACGCAGACTTCTCAAATGGCGACTTCCGCCGTGCTCAGATCCCTC
JMFF011F10-           TCCTCACGGGAGCAAACGCAGACTTCTCAAATGGCGACTTCCGCCGTGCTCAGATCCCTC
JMFN041J15-                            GCAGACTTCTCAAATGGCGACTTCCGCCGTGCTCAGATCCCTC
JMFN003E04-                       CAAACGCAGACTTCTCAAATGGCGACTTCCGCCGTGCTCAGATCCCTC
                      ____________________________________________________________
consensus             TCCTCACGGGAGCAAACGCAGACTTCTCAAATGGCGACTTCCGCCGTGCTCAGATCCCTC
 
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JMFF020J03-           CGCCGCCGCGATCTGGCTTCCTCTTCCCTCTCTGCCTACAAAACTTTCACTGCCAATACC
JMFF011F10-           CGCCGCCGCGATCTGGCTTCCTCTTCCCTCTCTGCCTACAAAACTTTCACTGCCAATACC
JMFN041J15-           CGCCGCCGCGATCTGGCTTCCTCTTCCCTCTCTGCCTACAAAACTTTCACTGCCAATACC
JMFN003E04-           CGCCGCCGCGATCTGGCTTCCTCTTCCCTCTCTGCCTACAAAACTTTCACTGCCAATACC
                      ____________________________________________________________
consensus             CGCCGCCGCGATCTGGCTTCCTCTTCCCTCTCTGCCTACAAAACTTTCACTGCCAATACC
 
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JMFF020J03-           AATTCATCATTGGCATCATCAGTTACTGGTACTAGATGGGCTGGTATTGCTAGGCAATTT
JMFF011F10-           AATTCATCATTGGCATCATCAGTTACTGGTACTAGATGGGCTGGTATTGCTAGGCAATTT
JMFN041J15-           AATTCATCATTGGCATCATCAGTTACTGGTACTAGATGGGCTGGTATTGCTAGGCAATTT
JMFN003E04-           AATTCATCATTGGCATCATCAGTTACTGGTACTAGATGGGCTGGTATTGCTAGGCAATTT
                      ____________________________________________________________
consensus             AATTCATCATTGGCATCATCAGTTACTGGTACTAGATGGGCTGGTATTGCTAGGCAATTT
 
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JMFF020J03-           AGTTCAAAAGCCAGTGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCAT
JMFF011F10-           AGTTCAAAAGCCAGTGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCAT
JMFN041J15-           AGTTCAAAAGCCAGTGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCAT
JMFN003E04-           AGTTCAAAAGCCAGTGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCAT
                      ____________________________________________________________
consensus             AGTTCAAAAGCCAGTGGAAATGAAGCTGCTGGTATTGACTTGAGTACTGTGAACTCCCAT
 
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JMFF020J03-           AGCTCTGATAAGGAGAACAAGGTCACCCCATCTGTGGCTGCTGCTTACCAGAAAGGATTA
JMFF011F10-           AGCTCTGATAAGGAGAACAAGGTCACCCCATCTGTGGCTGCTGCTTACCAGAAAGGATTA
JMFN041J15-           AGCTCTGATAAGGAGAACAAGGTCACCCCATCTGTGGCTGCTGCTTACCAGAAAGGATTA
JMFN003E04-           AGCTCTGATAAGGAGAACAAGGTCACCCCATCTGTGGCTGCTGCTTACCAGAAAGGATTA
rJMSF013I22+            CTCTGATNAGGAGAACAAGGTCACCCCATCTGTGGCTGCTGCNTACCAGAAAGGATTA
rJMFF011F10+                                              GCTGCTGCTTACCAGAAAGGATTA
rJMSF027M01+                                              GCTGCTGCTTACCAGAAAGGATTA
rJMFF020J03+                                            TGGCTGCTGCTTACCAGAAAGGATTA
                      ____________________________________________________________
consensus             AGCTCTGATAAGGAGAACAAGGTCACCCCATCTGTGGCTGCTGCTTACCAGAAAGGATTA
 
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JMFF020J03-           TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
JMFF011F10-           TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
JMFN041J15-           TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
JMFN003E04-           TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
rJMSF013I22+          TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
rJMFF011F10+          TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
rJMSF027M01+          TTNGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
rJMFF020J03+          TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
                      ____________________________________________________________
consensus             TTTGTTGGTATGCCAGCCAAACATCGCGAGTTTCAACGGGCTTTCTCTACAATCGCATCT
 
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JMFF020J03-           GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
JMFF011F10-           GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
JMFN041J15-           GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
JMFN003E04-           GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
rJMSF013I22+          GACAACCTAACTGATGGAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
rJMFF011F10+          GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
rJMSF027M01+          GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
rJMFF020J03+          GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
                      ____________________________________________________________
consensus             GACAACCTAACTGATGAAGGGAAAAAGGTCCTTCGCCCATTATCACCTCATCTTCCTGTT
 
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JMFF020J03-           TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTAC   
JMFF011F10-           TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
JMFN041J15-           TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
JMFN003E04-           TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
rJMSF013I22+          TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
rJMFF011F10+          TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
rJMSF027M01+          TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
rJMFF020J03+          TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
                      ____________________________________________________________
consensus             TATACGCCCCAGACTACTTCAACTTCTTCTATTCTGCATAGAATCTCTGGAGCTTACCTA
 
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JMFF011F10-           GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
JMFN041J15-           GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
JMFN003E04-           GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
rJMSF013I22+          GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
rJMFF011F10+          GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
rJMSF027M01+          GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
rJMFF020J03+          GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
                      ____________________________________________________________
consensus             GCCGGTGTTGCTTTTGGCTTTCATATTCTTTATCTGAAATTAGGTTCAGTTTGCCTCAGC
 
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JMFF011F10-           TACAGTGATTTCTACCAGTTCTTCTACTATACATCAAAGCTCAGCCAACTTTCTCTCGAG
JMFN041J15-           TACAGTGATTTCTACCAGTTCTTCTACTATACATCANAGCTCAGCCAACTTTCTCTCGAG
JMFN003E04-           TACAGTGATTTCTACCAGTTCTTCTACTATACATTAAAGCTCAGCCAACTTTCTCTCGAG
rJMSF013I22+          TACAGTGATTTCTACCAGTTCTTCTACTATACATCAAAGCTCAGCCAACTTTCTCTCGAG
rJMFF011F10+          TACAGTGATTTCTACCAGTTCTTCTACTATACATCAAAGCTCAGCCAACTTTCTCTCGAG
rJMSF027M01+          TACAGTGATTTCTACCAGTTCTTCTACTATACATCAAAGCTCAGCCAACTTTCTCTCGAG
rJMFF020J03+          TACAGTGATTTCTACCAGTTCTTCTACTATACATCAAAGCTCAGCCAACTTTCTCTCGAG
                      ____________________________________________________________
consensus             TACAGTGATTTCTACCAGTTCTTCTACTATACATCAAAGCTCAGCCAACTTTCTCTCGAG
 
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JMFF011F10-           GTAGCTGCAGTAGCTATGGCCTATCATG                                
JMFN041J15-           GTAGCTGCAGTAGCTATGGCCTATCATGTGATAAATGGGGTTCGTCATT           
JMFN003E04-           GTAGCTGCAGTAGCTATGGCCTATCATGTGATAAATGGGGTTCGTCATTTA         
rJMSF013I22+          GTAGCTGCAGTAGCTATGGCCTATCATGTGATAAATGGGGTTCGTCATTTAGTGGCAGAT
rJMFF011F10+          GTAGCTGCAGTAGCTATGGCCTATCATGTGATAAATGGGGTTCGTCATTTAGTGGCAGAT
rJMSF027M01+          GTAGCTGCAGTAGCTATGGCCTATCATGTGATAAATGGGGTTCGTCATTTAGTGGCAGAT
rJMFF020J03+          GTAGCTGCAGTAGCTATGGCCTATCATGTGATAAATGGGGTTCGTCATTTAGTGGCAGAT
                      ____________________________________________________________
consensus             GTAGCTGCAGTAGCTATGGCCTATCATGTGATAAATGGGGTTCGTCATTTAGTGGCAGAT
 
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rJMSF013I22+          TTTTCAGGATACCTCTTTCCTAAAATCGGAAGAAAGAAATTGAAATGAATGTAAAATGTC
rJMFF011F10+          TTTTCAGGATACCTCTTTCCTAAAATCGGAAGAAAGAAATTGAAATGAATGTAAAATGTC
rJMSF027M01+          TTTTCAGGATACCTCTTTCCTAAAATCGGAAGAAAGAAATTGAAATGAATGTAAAATGTC
rJMFF020J03+          TTTTCAGGATACCTCTTTCCTAAAATCGGAAGAAAGAAATTGAAATGAATGTAAAATGTC
                      ____________________________________________________________
consensus             TTTTCAGGATACCTCTTTCCTAAAATCGGAAGAAAGAAATTGAAATGAATGTAAAATGTC
 
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rJMSF013I22+          CCATCGGATCTCTCCTAGCAAAGTGAAGGAGTTTAATCTGGAATAAATAAAATGCCAGAC
rJMFF011F10+          CCATCGGTTCTCTCCTAGCAAAGTGAAGGAGTTTAATCTGGAATAAATAAAATGCCAGAC
rJMSF027M01+          CCATCGGTTCTCTCCTAGCAAAGTGAAGGAGTTTAATCTGGAATAAATAAAATGCCAGAC
rJMFF020J03+          CCATCGGTTCTCTCCTAGCAAAGTGAAGGAGTTTAATCTGGAATAAATAAAATGCCAGAC
                      ____________________________________________________________
consensus             CCATCGGTTCTCTCCTAGCAAAGTGAAGGAGTTTAATCTGGAATAAATAAAATGCCAGAC
 
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rJMSF013I22+          CCTGTGCACAAGGCTTCCCGCAGCATGCAGGAATGAGATAAATATTTAGGATTTTCCCTT
rJMFF011F10+          CCTGTGCACAAGGCTTCCCGCAGCATGCAGGAATGAGATAAATATTTAGGATTTTCCCTT
rJMSF027M01+          CCTGTGCACAAGGCTTCCCGCAGCATGCAGGAATGAGATAAATATTTAGGATTTTCCCTT
rJMFF020J03+          CCTGTGCACAAGGCTTCCCGCAGCATGCAGGAATGAGAT-AATATTTAGGATTTTCCCTT
                      ____________________________________________________________
consensus             CCTGTGCACAAGGCTTCCCGCAGCATGCAGGAATGAGATAAATATTTAGGATTTTCCCTT
 
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rJMSF013I22+          CAGAAAGATCAGGTTTCTACTTCATGTTCTGCTATCCTGTTTCCCGCATTTTGTACTTAA
rJMFF011F10+          CAGAAAGATCAGGTTTCTACTTCATGTTCTGCTATCCTGTTTCCCGCATTTTGTACTTAA
rJMSF027M01+          CAGAAAGATCAGGTTTCTACTTCATGTTCTGCTATCCTGTTTCCCGCATTTTGTACTTAA
rJMFF020J03+          CAGAAAGATCAGGTTTCTACTTCATGTTCTGCTATCCTGTTTCCCGCATTTTGTACTTAA
                      ____________________________________________________________
consensus             CAGAAAGATCAGGTTTCTACTTCATGTTCTGCTATCCTGTTTCCCGCATTTTGTACTTAA
 
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rJMSF013I22+          ACCCAGAAGCTTGGTGGTTCTTGGTTGTTCTGAACCTGGGTGTGCATCTTGTGAAATTTC
rJMFF011F10+          ACCCAGAAGCTTGGTGGTTCTTGGTTGTTCTGAACCTGGGTGTGCATCTTGTGAAATTTC
rJMSF027M01+          ACCCAGAAGCTTGGTGGTTCTTGGTTGTTCTGAACCTGGGTGTGCATCTTGTGAAATTTC
rJMFF020J03+          ACCCAGAAGCTTGGTGGTTCTTGGTTGTTCTGAACCTGGGTGTGCATCTTGTGAAATTTC
                      ____________________________________________________________
consensus             ACCCAGAAGCTTGGTGGTTCTTGGTTGTTCTGAACCTGGGTGTGCATCTTGTGAAATTTC
 
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rJMSF013I22+          CAGTAGAAATGA                                                
rJMFF011F10+          CAGTAGAAATGACTGGTGACTTTTTGTGAACTAATGTTTTTTAGTGCATGAATAAATAT 
rJMSF027M01+          CAGTAGAAATGACTGGTGACTTTTTGTGAACTAATGTTTTTTAGTGCATGAATAAATAT 
rJMFF020J03+          CAGTAGAAATGACTGGTGACTTTTTGTGAACTAATGTTTTTTAGTGCATGAATAAATATG
                      ____________________________________________________________
consensus             CAGTAGAAATGACTGGTGACTTTTTGTGAACTAATGTTTTTTAGTGCATGAATAAATATG