| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020F21 | Sequence | 570 | 000983 (3) | ref|XP_009607865.1| | 1e-50 | PREDICTED: calcium sensing receptor, chloroplastic [Nicotiana tomentosiformis] | 705 | 013698 (3) | ref|XP_011078735.1| | 8e-90 | PREDICTED: calcium sensing receptor, chloroplastic [Sesamum indicum] ref|XP_0110 |
| JMFF032M10 | Sequence | 550 | 000983 (3) | gb|EYU38155.1| | 5e-46 | hypothetical protein MIMGU_mgv1a007840mg [Erythranthe guttata] | 667 | 013698 (3) | ref|XP_011078735.1| | 1e-82 | PREDICTED: calcium sensing receptor, chloroplastic [Sesamum indicum] ref|XP_0110 |
| JMSF049C23 | Sequence | 551 | 000983 (3) | gb|EYU38155.1| | 5e-46 | hypothetical protein MIMGU_mgv1a007840mg [Erythranthe guttata] | 695 | 013698 (3) | ref|XP_011078735.1| | 1e-107 | PREDICTED: calcium sensing receptor, chloroplastic [Sesamum indicum] ref|XP_0110 |
This contig is upended
. : . : . : . : . : . :
rJMSF049C23+ TCTGCAGAACCAACTCTCATT
____________________________________________________________
consensus TCTGCAGAACCAACTCTCATT
. : . : . : . : . : . :
rJMSF049C23+ GTGGGGGCTGGTGGGGCATTATTCATTGCATATCTCCTCATTCCACCCATCTTTTCAGTC
____________________________________________________________
consensus GTGGGGGCTGGTGGGGCATTATTCATTGCATATCTCCTCATTCCACCCATCTTTTCAGTC
. : . : . : . : . : . :
rJMSF049C23+ ATCTCTTCGAGCCTTCGTGGTTACAAGGGTGAGCTCACTCCTGCTCAAACTCTGGATCTG
rJMFF032M10+ TGCTCAAACTCTGGATCTG
rJMFF020F21+ CGTGGTTACAAGGGTGAGCTCACTCCTGCTCAAACTCTGGATCTG
____________________________________________________________
consensus ATCTCTTCGAGCCTTCGTGGTTACAAGGGTGAGCTCACTCCTGCTCAAACTCTGGATCTG
. : . : . : . : . : . :
rJMSF049C23+ ATGTGTACCAAGAATTACAATTTGATCGATATTAGGTCGGAGACAGACAAGGGCAAGGCT
rJMFF032M10+ ATGTGTACCAAGAATTACAATTTGATCGATATTAGGTCGGAGACAGACAAGGGCAAGGCT
rJMFF020F21+ ATGTGTACCAAGAATTACAATTTGATCGATATTAGGTCGGAGACAGACAAGGGCAAGGCT
____________________________________________________________
consensus ATGTGTACCAAGAATTACAATTTGATCGATATTAGGTCGGAGACAGACAAGGGCAAGGCT
. : . : . : . : . : . :
rJMSF049C23+ GGAGTTCCTCGCCTTCCATCTAATGCTAAAAATAAGATGATTTCTATCCCTTTGGAAGAT
rJMFF032M10+ GGAGTTCCTCGCCTTCCATCTAATGCTAAAAATAAGATGATTTCTATCCCTTTGGAAGAT
rJMFF020F21+ GGAGTTCCTCGCCTTCCATCTAATGCTAAAAATAAGATGATTTCTATCCCTTTGGAAGAT
____________________________________________________________
consensus GGAGTTCCTCGCCTTCCATCTAATGCTAAAAATAAGATGATTTCTATCCCTTTGGAAGAT
. : . : . : . : . : . :
rJMSF049C23+ TTACCAAATAAGGTAAGAAGTCTGGTGAAAAATCCCAAGAAACTACAAGCTGAATTGGTA
rJMFF032M10+ TTACCAAATAAGGTAAGAAGTCTGGTGAAAAATCCCAAGAAACTACAAGCTGAATTGGTA
rJMFF020F21+ TTACCAAATAAGGTAAGAAGTCTGGTGAAAAATCCCAAGAAACTACAAGCTGAATTGGTA
____________________________________________________________
consensus TTACCAAATAAGGTAAGAAGTCTGGTGAAAAATCCCAAGAAACTACAAGCTGAATTGGTA
. : . : . : . : . : . :
rJMSF049C23+ GCTGTGAAAATATCATATCTGAAGAAAATCAACAAGGGATCCGATATTGTTATCCTCGAC
rJMFF032M10+ GCTGTGAAAATATCATATCTGAAGAAAATCAACAAGGGATCCGATATTGTTATCCTCGAC
rJMFF020F21+ GCTGTGAAAATATCATATCTGAAGAAAATCAACAAGGGATCCGATATTGTTATCCTCGAC
____________________________________________________________
consensus GCTGTGAAAATATCATATCTGAAGAAAATCAACAAGGGATCCGATATTGTTATCCTCGAC
. : . : . : . : . : . :
rJMSF049C23+ TCGTACGCGGATTCATCTAAGACAGTGGCGAGAACCCTGACAAGCCTGGGATTCAAGAAC
rJMFF032M10+ TCGTACGCGGATTCATCTAAGACAGTGGCGAGAACCCTGACAAGCCTGGGATTCAAGAAC
rJMFF020F21+ TCGTACGCGGATTCATCTAAGACAGTGGCGAGAACCCTGACAAGCCTGGGATTCAAGAAC
____________________________________________________________
consensus TCGTACGCGGATTCATCTAAGACAGTGGCGAGAACCCTGACAAGCCTGGGATTCAAGAAC
. : . : . : . : . : . :
rJMSF049C23+ TGCTGGATCGTGACCGATGGCTTCTCTGGAAGCAAAGGGTGGCTGCAGAGCCGGCTAGGC
rJMFF032M10+ TGCTGGATCGTGACCGATGGCTTCTCTGGAAGCAAAGGGTGGCTGCAGAGCCGGCTAGGC
rJMFF020F21+ TGCTGGATCGTGACCGATGGCTTCTCTGGAAGCAAAGGGTGGCTGCAGAGCCGGCTAGGC
____________________________________________________________
consensus TGCTGGATCGTGACCGATGGCTTCTCTGGAAGCAAAGGGTGGCTGCAGAGCCGGCTAGGC
. : . : . : . : . : . :
rJMSF049C23+ ACAGATTCATACTTCCTCTCCGCGGCTGAAGTTTTATCTCCATCGCGCATTATTCCTGCA
rJMFF032M10+ ACAGATTCATACTTCCTCTCCGCGGCTGAAGTTTTATCTCCATCGCGCATTATTCCTGCA
rJMFF020F21+ ACAGATTCATACTTCCTCTCCGCGGCTGAAGTTTTATCTCCATCGCGCATTATTCCTGCA
____________________________________________________________
consensus ACAGATTCATACTTCCTCTCCGCGGCTGAAGTTTTATCTCCATCGCGCATTATTCCTGCA
. : . : . : . : . : . :
rJMSF049C23+ GCCACCAGGCGTTTTGGCACGACAGGCACTGCGAAATTGCTGCCAGGGGGTTCTGATTAA
rJMFF032M10+ GCCACCAGGCGTTTTGGCACGACAGGCACTGCGAAATTGCTGCCAGGGGGTTCTGATTAA
rJMFF020F21+ GCCACCAGGCGTTTTGGCACGACAGGCACTGCGAAATTGCTGCCAGGGGGTTCTGATTAA
____________________________________________________________
consensus GCCACCAGGCGTTTTGGCACGACAGGCACTGCGAAATTGCTGCCAGGGGGTTCTGATTAA
. : . : . : . : . : . :
rJMSF049C23+ ATGTTCCACCTTGTACAACAAACACTCATATAACTGTAATTCTATATAGTTAGAGATCCT
rJMFF032M10+ ATGTTCCACCTTGTACAACAAACACTCATATAACTGTAATTCTATATAGTTAGAGATCCT
rJMFF020F21+ ATGTTCCACCTTGTACAACAAACACTCATATAACTGTAATTCTATATAGTTAGAGATCCT
____________________________________________________________
consensus ATGTTCCACCTTGTACAACAAACACTCATATAACTGTAATTCTATATAGTTAGAGATCCT
. : . : . : . : . : . :
rJMSF049C23+ ATGCATCTTTCTGC
rJMFF032M10+ ATGCATCTTTCTGCTGCAATTCTTTCATTAGTTCTAATGAATCAAATTTTTTTGCATATT
rJMFF020F21+ ATGCATCTTTCTGCTGCAATTCTTTCATTAGTTCTAATGAATCAAATTTTTTTGCATATT
____________________________________________________________
consensus ATGCATCTTTCTGCTGCAATTCTTTCATTAGTTCTAATGAATCAAATTTTTTTGCATATT
. : . : . : . : . : . :
rJMFF032M10+ ACAACTGTGAATACTGCTAAGATGTTTACTAGCAATAACAATATCAAT
rJMFF020F21+ ACAACTGTGAATACTGCTAAGATGTTTACTAGCAATAACAATATCAATGTTCATAAATTA
____________________________________________________________
consensus ACAACTGTGAATACTGCTAAGATGTTTACTAGCAATAACAATATCAATGTTCATAAATTA