| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020E06 | Sequence | 578 | 000919 (4) | emb|CDP02419.1| | 1e-23 | unnamed protein product [Coffea canephora] | 651 | 013696 (4) | gb|EYU44316.1| | 4e-58 | hypothetical protein MIMGU_mgv1a004819mg [Erythranthe guttata] |
| JMSF002H24 | Sequence | 267 | 013696 (4) | gb|KJB48475.1| | 1e-32 | hypothetical protein B456_008G070600 [Gossypium raimondii] | 669 | 023426 | ref|XP_006344826.1| | 9e-22 | PREDICTED: protein LYK5-like [Solanum tuberosum] |
| JMSF041F18 | Sequence | 791 | 000919 (4) | emb|CDP02419.1| | 4e-61 | unnamed protein product [Coffea canephora] | 750 | 013696 (4) | emb|CDP02419.1| | 1e-103 | unnamed protein product [Coffea canephora] |
| JMSF042D14 | Sequence | 744 | 000919 (4) | emb|CDP02419.1| | 7e-49 | unnamed protein product [Coffea canephora] | 768 | 013696 (4) | emb|CDP02419.1| | 5e-77 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF041F18+ AATGAAGCCATGGAAGGAGAAAAGAAT-G
rJMSF042D14+ AGCCATGGAAGGAGAAAAGAATNG
____________________________________________________________
consensus AATGAAGCCATGGAAGGAGAAAAGAATNG
. : . : . : . : . : . :
rJMSF041F18+ GGCATCATCACATGCCTG-AAACAAGAGGACTTTGCTTGTCTGAAGAACAGACAGTCAGC
rJMSF042D14+ GGCATCATCACATGCCTGAAAACAAGAGGACTTTGCTTGTCTGAAGAACAGACAGTCAGC
____________________________________________________________
consensus GGCATCATCACATGCCTGAAAACAAGAGGACTTTGCTTGTCTGAAGAACAGACAGTCAGC
. : . : . : . : . : . :
rJMSF041F18+ ACTATTTTGAGGCGGCCAAGAATT-GGGGGGAATAGAATCACAGATATGTTCACAGAGCC
rJMSF042D14+ ACTATTTTGAGGCGGCCAAGAATTGGGGGGGAATAGAATCACAGATATGTTCACAGAGCC
____________________________________________________________
consensus ACTATTTTGAGGCGGCCAAGAATTGGGGGGGAATAGAATCACAGATATGTTCACAGAGCC
. : . : . : . : . : . :
rJMSF041F18+ TTACAGGCTAATTCGTAGGTGCGAAGTGACTGCAATACTCATCTTGTATGGCCTTCCGAG
rJMSF042D14+ TTACAGGCTAATTCGTAGGTGCGAAGTGACTGCAATACTCATCTTGTATGGCCTTCCGAG
____________________________________________________________
consensus TTACAGGCTAATTCGTAGGTGCGAAGTGACTGCAATACTCATCTTGTATGGCCTTCCGAG
. : . : . : . : . : . :
JMSF002H24- CATGAGATGATGCATGCATGGTTGCGGCTTCAAGG
rJMSF041F18+ GTTGCTGACCGGCTCAATCCTGGCTCATGAGATGATGCATGCATACCTGCGGCTTAAAGG
rJMSF042D14+ GTTGCTGACCGGCTCAATCCTGGCTCATGAGATGATGCATGCATACCTGCGGCTTAAAGG
rJMFF020E06+ CATGAGATGATGCATGCATACCTGCGGCTTAAAGG
____________________________________________________________
consensus GTTGCTGACCGGCTCAATCCTGGCTCATGAGATGATGCATGCATACCTGCGGCTTAAAGG
. : . : . : . : . : . :
JMSF002H24- TTATCCCAATCTTAGCCCAGAAGTCGAAGAAGGTATCTGCCAAGTCCTAGCTCACATGTG
rJMSF041F18+ TTATCCCAATCTAAGCCCAGAAATAGAAGAAGGAATCTGCCAAGTCTTAGCTCACATGTG
rJMSF042D14+ TTATCCCAATCTAAGCCCAGAAATAGAAGAAGGAATCTGCCAAGTCTTAGCTCACATGTG
rJMFF020E06+ TTATCCCAATCTAAGCCCAGAAATAGAAGAAGGAATCTGCCAAGTCTTAGCTCACATGTG
____________________________________________________________
consensus TTATCCCAATCTAAGCCCAGAAATAGAAGAAGGAATCTGCCAAGTCTTAGCTCACATGTG
. : . : . : . : . : . :
JMSF002H24- GTTGGATTCTGAAATTTTAGCCGGTTCTGGTAG
rJMSF041F18+ GTTAGATTCAGAAATCATAGCCGGTTCTGGTAGCAGCAGCACTGCATCTACTTCTTCGTC
rJMSF042D14+ GTTAGATTCAGAAATCATAGCCGGTTCTGGTAGCAGCAGCACTGCATCTACTTCTTCGTC
rJMFF020E06+ GTTAGATTCAGAAATCATAGCCGGTTCTGGTAGCAGCAGCACTGCATCTACTTCTTCGTC
____________________________________________________________
consensus GTTAGATTCAGAAATCATAGCCGGTTCTGGTAGCAGCAGCACTGCATCTACTTCTTCGTC
. : . : . : . : . : . :
rJMSF041F18+ TTCTTCGTCTGCAACCTCACCATCATCATCGTCATCATCGTCCACTACCTCTTCAAAGAA
rJMSF042D14+ TTCTTCGTCTGCAACCTCACCATCATCATCGTCATCATCGTCCACTACCTCTTCAAAGAA
rJMFF020E06+ TTCTTCGTCTGCAACCTCACCATCATCATCGTCATCATCGTCCACTACCTCTTCAAAGAA
____________________________________________________________
consensus TTCTTCGTCTGCAACCTCACCATCATCATCGTCATCATCGTCCACTACCTCTTCAAAGAA
. : . : . : . : . : . :
rJMSF041F18+ GGGTACCCGGTCGCAGTTCGAGAAGAAACTGGGCGAGTTTTTCAAGCACCAGATAGAATC
rJMSF042D14+ GGGTACCCGGTCGCAGTTCGAGAAGAAACTGGGCGAGTTTTTCAAGCACCAGATAGAATC
rJMFF020E06+ GGGTACCCGGTCGCAGTTCGAGAAGAAACTGGGCGAGTTTTTCAAGCACCAGATAGAATC
____________________________________________________________
consensus GGGTACCCGGTCGCAGTTCGAGAAGAAACTGGGCGAGTTTTTCAAGCACCAGATAGAATC
. : . : . : . : . : . :
rJMSF041F18+ AGACACTTCTGTAGCTTATGGCGATGGGTTCAGAGAAGGCAACAAGGCAGTGCTCAAGTA
rJMSF042D14+ AGACACTTCTGTAGCTTATGGCGATGGGTTCAGAGAAGGCAACAAGGCAGTGCTCAAGTA
rJMFF020E06+ AGACACTTCTGTAGCTTATGGCGATGGGTTCAGAGAAGGCAACAAGGCAGTGCTCAAGTA
____________________________________________________________
consensus AGACACTTCTGTAGCTTATGGCGATGGGTTCAGAGAAGGCAACAAGGCAGTGCTCAAGTA
. : . : . : . : . : . :
rJMSF041F18+ CGGCCTCAGGAGTACACTTGACCATATTCGGCTAACTGGAAGCTTTCCTTGCTGATCTGA
rJMSF042D14+ CGGCCTCAGGAGTACACTTGACCATATTCGGCTAACTGGAAGCTTTCCTTGCTGATCTGA
rJMFF020E06+ CGGCCTCAGGAGTACACTTGACCATATTCGGCTAACTGGAAGCTTTCCTTGCTGATCTGA
____________________________________________________________
consensus CGGCCTCAGGAGTACACTTGACCATATTCGGCTAACTGGAAGCTTTCCTTGCTGATCTGA
. : . : . : . : . : . :
rJMSF041F18+ TGAGGTTTTCCACTTCCAGTCATACTTTATATATATACTTTGATACCAGTTTTATAGGAC
rJMSF042D14+ TGAGGTTTTCCACTTCCAGTCATACTTTATATATATACTTTGATACCAGTTTTATAGGAC
rJMFF020E06+ TGAGGTTTTCCACTTCCAGTCATACTTTATATATATACTTTGATACCAGTTTTATAGGAC
____________________________________________________________
consensus TGAGGTTTTCCACTTCCAGTCATACTTTATATATATACTTTGATACCAGTTTTATAGGAC
. : . : . : . : . : . :
rJMSF041F18+ AAACCCCCCCATGCATATACAAATCATAAAGATGTAATGAATCC
rJMSF042D14+ AAACCCCCCCATGCATATACAAATCATAAAGATGTAATGAATCCAATAAATACGTGTATG
rJMFF020E06+ AAACCCCCCCATGCATATACAAATCATAAAGATGTAATGAATCCAATAAATACGTGTATG
____________________________________________________________
consensus AAACCCCCCCATGCATATACAAATCATAAAGATGTAATGAATCCAATAAATACGTGTATG
. : . : . : . : . : . :
rJMSF042D14+ TATTATAGAGTGCAACATATATAT
rJMFF020E06+ TATTATAGAGTGCAACATATATATTGTGATTATGATATTTATATACATAACAACATCAAT
____________________________________________________________
consensus TATTATAGAGTGCAACATATATATTGTGATTATGATATTTATATACATAACAACATCAAT