Contig 013693:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019K01Sequence511013693 (9)ref|XP_006343948.1|1e-80PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]668013693 (9)ref|XP_006343948.1|3e-89PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]
JMFF026F07Sequence463013693 (9)ref|XP_006343948.1|5e-69PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]687013693 (9)ref|XP_006343948.1|4e-89PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]
JMFF034H23Sequence574013693 (9)ref|XP_006343948.1|9e-90PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]647013693 (9)ref|XP_006343948.1|3e-89PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]
JMFF046G21Sequence605013693 (9)ref|XP_006343948.1|2e-90PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum tuberosum]512013693 (9)ref|XP_004245579.1|2e-63PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum lycopersicum]
JMFN035A18Sequence583013693 (9)ref|XP_004245579.1|9e-81PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMFN035A18+                                                           TCGCCGTAGAAA
rJMFF034H23-                                      CGGCGGCGACCGTCGGATAATCGCCGTAGAAA
JMFF034H23+              TCTGAAGCATAATTGATTATTACAGCGGCGGCGACCGTCGGATAATCGCCGTAGAAA
JMFF046G21+                                       CGGCGGCGACCGTCGGATAATCGCCGTAGAAA
rJMFF026F07-                                                          TCGCCGTAGAAA
rJMFF046G21-                                                          TCGCCGTAGAAA
rJMFF019K01-                                      CGGCGGCGACCGTCGGATAATCGCCGTAGAAA
                      ____________________________________________________________
consensus                TCTGAAGCATAATTGATTATTACAGCGGCGGCGACCGTCGGATAATCGCCGTAGAAA
 
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JMFN035A18+           TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
rJMFF034H23-          TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
JMFF034H23+           TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
JMFF046G21+           TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
rJMFF026F07-          TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
JMFF019K01+                     CGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
JMFF026F07+                                                                 TCCGGT
rJMFF046G21-          TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
rJMFF019K01-          TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
                      ____________________________________________________________
consensus             TCGGAAATCCCGGAGGCGAGCCACAGTCTCTCATTGAAGCTCTCCTGCATATCTTCCGGT
 
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JMFN035A18+           ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
rJMFF034H23-          ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
JMFF034H23+           ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
JMFF046G21+           ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
rJMFF026F07-          ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
JMFF019K01+           ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
JMFF026F07+           ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
rJMFF046G21-          ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
rJMFF019K01-          ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
                      ____________________________________________________________
consensus             ATGAACGGCGTCCGGCAGAGCGGGCACGTTTTCTGATCGTGGTCCATCCAGCGGTCGAGG
 
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JMFN035A18+           CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
rJMFF034H23-          CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
JMFF034H23+           CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
JMFF046G21+           CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
rJMFF026F07-          CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
JMFF019K01+           CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
JMFF026F07+           CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
rJMFF046G21-          CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
rJMFF019K01-          CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
                      ____________________________________________________________
consensus             CAGTTGCGGTGGAAGATGTGGCGGCAATTCGTCAGCCGTCGGATCTCATCCTCGCCGTCG
 
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JMFN035A18+           AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
rJMFF034H23-          AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
JMFF034H23+           AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
JMFF046G21+           AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
rJMFF026F07-          AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
JMFF019K01+           AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
JMFF026F07+           AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
rJMFF046G21-          AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
rJMFF019K01-          AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
                      ____________________________________________________________
consensus             AATTCGTACAAGCACACGGCGCAGCTCTCGGGCGGGTCCACCAGCTCCGAGAACTTCACC
 
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JMFN035A18+           ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
rJMFF034H23-          ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
JMFF034H23+           ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
JMFF046G21+           ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
rJMFF026F07-          ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
JMFF019K01+           ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
JMFF026F07+           ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
rJMFF046G21-          ACCGGCAGGAGCTCCCGGATCAGGGCGG                                
rJMFF019K01-          ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
                      ____________________________________________________________
consensus             ACCGGCAGGAGCTCCCGGATCAGGGCGGCGGAGACGGAGTGGAGCTCCGACGCCGATTCC
 
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JMFN035A18+           TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGC     
rJMFF034H23-          TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
JMFF034H23+           TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
JMFF046G21+           TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
rJMFF026F07-          TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
JMFF019K01+           TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
JMFF026F07+           TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
rJMFF019K01-          TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
                      ____________________________________________________________
consensus             TCCCGGTCCGGGAACGACATTTCGGGTTCCAAGAAGTCGCCGAGGCCCAGAAAGCCGAAA
 
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rJMFF034H23-          ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
JMFF034H23+           ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
JMFF046G21+           ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
rJMFF026F07-          ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
JMFF019K01+           ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
JMFF026F07+           ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
rJMFF019K01-          ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
                      ____________________________________________________________
consensus             ATCGCGGTAATGAATCTCCTGAGAAAGCCTAGAAGGGTGAGGACGTGAACCAGTAGCTTG
 
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rJMFF034H23-          GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
JMFF034H23+           GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
JMFF046G21+           GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
rJMFF026F07-          GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
JMFF019K01+           GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
JMFF026F07+           GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
rJMFF019K01-          GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
                      ____________________________________________________________
consensus             GGGAGGAAAAGATCAGTATAACCGACCGGAAATCCCATATCGTCGCCGTGAAACGGAACA
 
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rJMFF034H23-          CGCCGTACAATCGTCGTTTAATTCTCCGATCGGAGAC                       
JMFF034H23+           CGCCGTACAATCGTCGTTTAATTCTCCGATCGGAGAC                       
JMFF046G21+           CGCCGTACAATCGTCGTTTAATTCTCAGATCGGAGAC                       
rJMFF026F07-          CGCCGTACAATCGTCGTTTAATTCTCCGATCGGAGAC                       
JMFF019K01+           CGCCGTACAATCGTCGTTTAATTCTCCGATCGGAGAC                       
JMFF026F07+           CGCCGTACAATCGTCGTTTAATTCTCCGATCGGAGAC                       
rJMFF019K01-          CGCCGTACAATCGTCGTTTAATTCTCCGATCGGAGACTGTTCTGTTCCAGACAGCGATGA
                      ____________________________________________________________
consensus             CGCCGTACAATCGTCGTTTAATTCTCCGATCGGAGACTGTTCTGTTCCAGACAGCGATGA