Contig 013686:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF048K02-                        GACAACACCACTCGACCGTTTCACGCTCTTCTTCTTCTTCTTCTTCT
                      ____________________________________________________________
consensus                          GACAACACCACTCGACCGTTTCACGCTCTTCTTCTTCTTCTTCTTCT
 
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JMSF048K02-           TCTACTTCTACCACTTCCAATCTAAACGCTCCTCTCTGCCATTTCTCTCACATCAATGAA
JMSF047E14-                                                GCCATTTCTCTCACATCAATGAA
                      ____________________________________________________________
consensus             TCTACTTCTACCACTTCCAATCTAAACGCTCCTCTCTGCCATTTCTCTCACATCAATGAA
 
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JMSF048K02-           GACCCTTTAACCACCCTCACCGCCGTGGCCGGAAGGGAAGAATAAACAACACTCAAAAAT
JMSF047E14-           GACCCTTTAACCACCCTCACCGCCGTGGCCGGAAGGGAAGAATAAACAACACTCAAAAAT
                      ____________________________________________________________
consensus             GACCCTTTAACCACCCTCACCGCCGTGGCCGGAAGGGAAGAATAAACAACACTCAAAAAT
 
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JMSF048K02-           CTCAAAGCAAGAGGGAAGAAGAAGAAGGGCGGCGTCTCTGTAACCATGGGGAATTTTCTT
JMSF047E14-           CTCAAAGCAAGAGGGAAGAAGAAGAAGGGCGGCGTCTCTGTAACCATGGGGAATTTTCTT
                      ____________________________________________________________
consensus             CTCAAAGCAAGAGGGAAGAAGAAGAAGGGCGGCGTCTCTGTAACCATGGGGAATTTTCTT
 
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JMSF048K02-           GGTTGCTTTGGGGCTTCTGACGACTCTCGCAAACGCAGAAAGCAGAGAGAAAATGTCGGT
JMSF047E14-           GGTTGCTTTGGGGCTTCTGACGACTCTCGCAAACGCAGAAAGCAGAGAGAAAATGTCGGT
                      ____________________________________________________________
consensus             GGTTGCTTTGGGGCTTCTGACGACTCTCGCAAACGCAGAAAGCAGAGAGAAAATGTCGGT
 
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JMSF048K02-           TCTCGAGAACAAAGACATGTTGTTCAGATCACTCCGGCGACGCCGCAAAGGACCATCTCT
JMSF047E14-           TCTCGAGAACAAAGACATGTTGTTCAGATCACTCCGGCGACGCCGCAAAGGACCATCTCT
                      ____________________________________________________________
consensus             TCTCGAGAACAAAGACATGTTGTTCAGATCACTCCGGCGACGCCGCAAAGGACCATCTCT
 
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JMSF048K02-           GCAGAAGCGCCACCTGCCAACTTGGTTTCACAGGACATTTGTGAGGAGAAATTGAGCTTA
JMSF047E14-           GCAGAAGCGCCACCTGCCAACTTGGTTTCACAGGACATTTGTGAGGAGAAATTGAGCTTA
                      ____________________________________________________________
consensus             GCAGAAGCGCCACCTGCCAACTTGGTTTCACAGGACATTTGTGAGGAGAAATTGAGCTTA
 
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JMSF048K02-           AGTGCCAGAAAGAGGGTTACATTTGATGAAAATGTAAGAACATATGAGCATGTTTCAGTT
JMSF047E14-           AGTGCCAGAAAGAGGGTTACATTTGATGAAAATGTAAGAACATATGAGCATGTTTCAGTT
                      ____________________________________________________________
consensus             AGTGCCAGAAAGAGGGTTACATTTGATGAAAATGTAAGAACATATGAGCATGTTTCAGTT
 
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JMSF048K02-           TATGAAAGCACTGAAACTTTGCCAGAGAAGACAGGCATGAGTGAAAAGGAAAAGTCAATC
JMSF047E14-           TATGAAAGCACTGAAACTTTGCCAGAGAAGACAGGCATGAGTGAAAAGGAAAAGTCAATC
JMFF018L04-                                                            AAAAGTCAATC
                      ____________________________________________________________
consensus             TATGAAAGCACTGAAACTTTGCCAGAGAAGACAGGCATGAGTGAAAAGGAAAAGTCAATC
 
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JMSF048K02-           CAGTCTAGCTCATCCACTGAAGATGGTTCTGTGATTTCCAGTGTTGGATCATATCCTTGT
JMSF047E14-           CAGTCTAGCTCATCCACTGAAGATGGTTCTGTGATTTCCAGTGTTGGATCATATCCTTGT
JMFF018L04-           CAGTCTAGCTCATCCACTGAAGATGGTTCTGTGATTTCCAGTGTTGGATCATATCCTTGT
                      ____________________________________________________________
consensus             CAGTCTAGCTCATCCACTGAAGATGGTTCTGTGATTTCCAGTGTTGGATCATATCCTTGT
 
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JMSF048K02-           AATCACA                                                     
JMSF047E14-           AATCACAGGTACCAGAACTGCAAAGAAAGTGATGATGAGGGTGAAGAGTTTGGTGATAGT
JMFF018L04-           AATCACAGGTACCAGAACTGCAAAGAAAGTGATGATGAGGGTGAAGAGTTTGGTGATAGT
                      ____________________________________________________________
consensus             AATCACAGGTACCAGAACTGCAAAGAAAGTGATGATGAGGGTGAAGAGTTTGGTGATAGT
 
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JMSF047E14-           GACTTGGATGACGACGAAGATTTCGTTGAAGATGATGATGGTGATGAATGTTTTGATAAT
JMFF018L04-           GACTTGGATGACGACGAAGATTTCGTTGAAGATGATGATGGTGATGAATGTTTTGATAAT
                      ____________________________________________________________
consensus             GACTTGGATGACGACGAAGATTTCGTTGAAGATGATGATGGTGATGAATGTTTTGATAAT
 
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JMSF047E14-           GAAGGTAAGATGGCAGTTCATGAAATCTGGTCTGAAGCAGTTTTAACTGCAT        
JMFF018L04-           GAAGGTAAGATGGCAGTTCATGAAATCTGGTCTGAAGCAGTTTTAACTGCATCAATGGAG
                      ____________________________________________________________
consensus             GAAGGTAAGATGGCAGTTCATGAAATCTGGTCTGAAGCAGTTTTAACTGCATCAATGGAG
 
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JMFF018L04-           TCAAGCTCTGGGAAGTCCTTAGCAAGGGTGAATTCTGAGGAAGTGGATAGTCCTCTGATC
                      ____________________________________________________________
consensus             TCAAGCTCTGGGAAGTCCTTAGCAAGGGTGAATTCTGAGGAAGTGGATAGTCCTCTGATC
 
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JMFF018L04-           CCTAGTTTGGCAGTAGAGGAGGAGGAAAGGGGAATGGGAGAAACAAAAGGATATGTAAGA
                      ____________________________________________________________
consensus             CCTAGTTTGGCAGTAGAGGAGGAGGAAAGGGGAATGGGAGAAACAAAAGGATATGTAAGA
 
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JMFF018L04-           GACAGAAGTGCCTATGTTCATCCTGTGCTTAACCCTGTGGAGAATCTTTCCCAGTGGAAA
rJMSF047E14+                                                                 GGAAA
                      ____________________________________________________________
consensus             GACAGAAGTGCCTATGTTCATCCTGTGCTTAACCCTGTGGAGAATCTTTCCCAGTGGAAA
 
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JMFF018L04-           GCTCTCAAGTCCAAAGCAGCAGCACAGCTAGTGAAGCCACTGAAGGAGAACTTGCCTGAA
rJMSF048K02+                                                  TGAAGGAGAACTTGCCTGAA
rJMSF047E14+          GCTCTCCAGTCCAAAGCAGCAGCACAGCTAGTGAAGCCACTGAAGGAGGACTTGCCTGAA
                      ____________________________________________________________
consensus             GCTCTCCAGTCCAAAGCAGCAGCACAGCTAGTGAAGCCACTGAAGGAGAACTTGCCTGAA
 
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JMFF018L04-           GATCAAGAAGCGCCCCGCATTTCATTCAGTTTAGAACCAAAGCAGAACCCGAAGTTTGAT
rJMSF048K02+          GATCAAGAAGCGCCCCGCATTTCATTCAGTTTAGAACCAAAGCAGAACCCGAAGTTTGAT
rJMSF047E14+          GATCAAGAAGCGCCCCGCATTTCATTCAGTTTAGAACCAAAGCAGAACCCGAAGTTTGAT
                      ____________________________________________________________
consensus             GATCAAGAAGCGCCCCGCATTTCATTCAGTTTAGAACCAAAGCAGAACCCGAAGTTTGAT
 
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JMFF018L04-           GATGATTCCAA                                                 
rJMSF048K02+          GATGATTCCAAGGTCCACAACCAAGAGATTGCAGTCAATGCCAGCCTTTCAAATTGGTTG
rJMSF047E14+          GATGATTCCAAGGTCCACAACCAAGAGATTGCAGTCAATGCCAGCCTTTCAAATTGGTTG
                      ____________________________________________________________
consensus             GATGATTCCAAGGTCCACAACCAAGAGATTGCAGTCAATGCCAGCCTTTCAAATTGGTTG
 
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rJMSF048K02+          GTTTCACCAGAAACCACCTCTCCTGCAACGAAGACTAGCTTCAGTGGGTTCGAGACTGTT
rJMSF047E14+          GTTTCACCAGAAACCACCTCTCCTGCAACGAAGACTAGCTTCAGTGGGTTCGAGACTGTT
rJMFF018L04+                                    AACGAAGACTAGCTTCAGTGGGTTCGAGACTGTT
                      ____________________________________________________________
consensus             GTTTCACCAGAAACCACCTCTCCTGCAACGAAGACTAGCTTCAGTGGGTTCGAGACTGTT
 
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rJMSF048K02+          TCATCTGCAAATCCCCCGTCAGGAGGCTCAAATTCAGCTAGGAGCTTCGAAGACAGGCCA
rJMSF047E14+          TCATCTGCAAATCCCCCGTCAGGAGGCTCAAATTCAGCTAGGAGCTTCGAAGACAGGCCA
rJMFF018L04+          TCATCTGCAAATCCCCCGTCAGGAGGCTCAAATTCAGCTAGGAGCTTCGAAGACAGGCCA
                      ____________________________________________________________
consensus             TCATCTGCAAATCCCCCGTCAGGAGGCTCAAATTCAGCTAGGAGCTTCGAAGACAGGCCA
 
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rJMSF048K02+          ATTCTAGGTGCATTAACCGTCGAGGAGCTGAAACAGCTCTCAGCATCATCTGCATCTCCA
rJMSF047E14+          ATTCTAGGTGCATTAACCGTCGAGGAGCTGAAACAGCTCTCAGCATCATCTGCATCTCCA
rJMFF018L04+          ATTCTAGGTGCATTAACCGTCGAGGAGCTGAAACAGCTCTCAGCATCATCTGCATCTCCA
                      ____________________________________________________________
consensus             ATTCTAGGTGCATTAACCGTCGAGGAGCTGAAACAGCTCTCAGCATCATCTGCATCTCCA
 
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rJMSF048K02+          AGGCGATCTCCCAGTCGAAGCCCTGACGAGGTTCCTATCATAGGAACTGTTGGGACATAC
rJMSF047E14+          AGGCGATCTCCCAGTCGAAGCCCTGACGAGGTTCCTATCATAGGAACTGTTGGGACATAC
rJMFF018L04+          AGGCGATCTCCCAGTCGAAGCCCTGACGAGGTTCCTATCATAGGAACTGTTGGGACATAC
                      ____________________________________________________________
consensus             AGGCGATCTCCCAGTCGAAGCCCTGACGAGGTTCCTATCATAGGAACTGTTGGGACATAC
 
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rJMSF048K02+          TGGAATGACTATGACTCAGGAGTAAAGAATGGTGGTGGCTCTAGGTCTAAGACACCCTCT
rJMSF047E14+          TGGAATGACTATGACTCAGGAGTAAAGAATGGTGGTGGCTCTAGGTCTAAGACACCCTCT
rJMFF018L04+          TGGAATGACTATGACTCAGGAGTAAAGAATGGTGGTGGCTCTAGGTCTAAGACACCCTCT
                      ____________________________________________________________
consensus             TGGAATGACTATGACTCAGGAGTAAAGAATGGTGGTGGCTCTAGGTCTAAGACACCCTCT
 
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rJMSF048K02+          TCTTTTAAGGGAATACCAAACACAACCAGCAAGTACAGAGAGGATAAGAGAGTGAATTGG
rJMSF047E14+          TCTTTTAAGGGAATACCAAACACAACCAGCAAGTACAGAGAGGATAAGAGAGTGAATTGG
rJMFF018L04+          TCTTTTAAGGGAATACCAAACACAACCAGCAAGTACAGAGAGGATAAGAGAGTGAATTGG
                      ____________________________________________________________
consensus             TCTTTTAAGGGAATACCAAACACAACCAGCAAGTACAGAGAGGATAAGAGAGTGAATTGG
 
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rJMSF048K02+          CATTCTACTCCATTTGAGACAAGGTTGGAGAGAGCCTTATTAAACCAAGGTGCTGCTGAA
rJMSF047E14+          CATTCTACTCCATTTGAGACAAGGTTGGAGAGAGCCTTATTAAACCAAGGTGCTGCTGAA
rJMFF018L04+          CATTCTACTCCATTTGAGACAAGGTTGGAGAGAGCCTTATTAAACCAAGGTGCTGCTGAA
                      ____________________________________________________________
consensus             CATTCTACTCCATTTGAGACAAGGTTGGAGAGAGCCTTATTAAACCAAGGTGCTGCTGAA
 
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rJMSF048K02+          GCCTAATTCTACATTCAAAGTACAAATTCAGAAGATTGTGAAGAGATGTTGGAGTTTTCT
rJMSF047E14+          GCCTAATTCTACATTCAAAGTACAAATTCAGAAGATTGTGAAGAGATGTTGGAGTTTTCT
rJMFF018L04+          GCCTAATTCTACATTCAAAGTACAAATTCAGAAGATTGTGAAGAGATGTTGGAGTTTTCT
                      ____________________________________________________________
consensus             GCCTAATTCTACATTCAAAGTACAAATTCAGAAGATTGTGAAGAGATGTTGGAGTTTTCT
 
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rJMSF048K02+          TTTTCCCATGCTTGATTTATTTTTTCATTTTTTGGGTACATTTATTTATTTTTTGATTAG
rJMSF047E14+          TTTTCCCATGCTTGATTTATTTTTTCATTTTTTGGGTACATTTATTTATTTTTTGATTAG
rJMFF018L04+          TTTTCCCATGCTTGATTTATTTTTTCATTTTTTGGGTACATTTATTTATTTTTTGATTAG
                      ____________________________________________________________
consensus             TTTTCCCATGCTTGATTTATTTTTTCATTTTTTGGGTACATTTATTTATTTTTTGATTAG
 
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rJMSF048K02+          AATTCTTGAATTTGTTTCTATGCAAATTTGAGAGATGGCT-CATGTGAATTTGCTTGTAT
rJMSF047E14+          AATTCTTGAATTTGTTTCTATGCAAATTTGAGAGATGGCTCCATGTGAATTTGCTTGTAT
rJMFF018L04+          AATTCTTGAATTTGTTTCTATGCAAATTTGAGAGATGGCT-CATGTGAATTTGCTTGTAT
                      ____________________________________________________________
consensus             AATTCTTGAATTTGTTTCTATGCAAATTTGAGAGATGGCT-CATGTGAATTTGCTTGTAT
 
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rJMSF048K02+          GT                                                          
rJMSF047E14+          GT                                                          
rJMFF018L04+          GTTGTAAGTTTACATACTGGTGATGTAATTTATTTCAGATTTGTTTGTGTCAGAATTATG
                      ____________________________________________________________
consensus             GTTGTAAGTTTACATACTGGTGATGTAATTTATTTCAGATTTGTTTGTGTCAGAATTATG
 
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rJMFF018L04+          TAGAGCATAGTCATATAGATGTGAAGATGTGTTTTTGCAAACATGTATAAGAATTTCAAG
                      ____________________________________________________________
consensus             TAGAGCATAGTCATATAGATGTGAAGATGTGTTTTTGCAAACATGTATAAGAATTTCAAG